data_QOH # _chem_comp.id QOH _chem_comp.name "11-methyl-~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]dodecanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H52 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Syrbactin inhibitor; HB333" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-09 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.736 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QOH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZOU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QOH C4 C1 C 0 1 N N N 55.583 -133.057 35.317 -6.519 -0.359 -0.117 C4 QOH 1 QOH C5 C2 C 0 1 N N N 54.203 -133.290 34.762 -7.685 0.328 0.596 C5 QOH 2 QOH C6 C3 C 0 1 N N N 53.927 -132.324 33.646 -9.001 -0.323 0.167 C6 QOH 3 QOH C7 C4 C 0 1 N N N 52.658 -131.603 33.957 -10.167 0.364 0.881 C7 QOH 4 QOH C8 C5 C 0 1 N N N 51.601 -132.050 32.987 -11.483 -0.287 0.451 C8 QOH 5 QOH C10 C6 C 0 1 N N N 49.148 -131.788 32.641 -13.965 -0.251 0.735 C10 QOH 6 QOH C15 C7 C 0 1 N N N 61.358 -134.372 37.266 2.065 -0.501 -0.319 C15 QOH 7 QOH C17 C8 C 0 1 N N S 61.262 -135.625 39.311 4.448 -0.864 0.037 C17 QOH 8 QOH C21 C9 C 0 1 N N N 59.125 -138.361 40.511 7.859 -2.277 0.189 C21 QOH 9 QOH C22 C10 C 0 1 N N N 59.500 -138.588 41.900 8.919 -1.665 1.107 C22 QOH 10 QOH C24 C11 C 0 1 N N N 61.461 -137.915 43.136 8.107 0.590 0.892 C24 QOH 11 QOH C26 C12 C 0 1 N N N 62.793 -137.716 43.131 8.262 2.034 0.490 C26 QOH 12 QOH C28 C13 C 0 1 N N S 63.396 -135.496 42.321 5.854 2.657 0.252 C28 QOH 13 QOH C27 C14 C 0 1 N N N 63.182 -136.345 43.537 7.119 2.856 1.089 C27 QOH 14 QOH C29 C15 C 0 1 N N N 63.727 -134.108 42.772 4.906 3.840 0.459 C29 QOH 15 QOH N30 N1 N 0 1 N N N 62.217 -135.491 41.473 5.194 1.400 0.698 N30 QOH 16 QOH C31 C16 C 0 1 N N N 62.343 -135.605 40.116 5.090 0.458 -0.298 C31 QOH 17 QOH O32 O1 O 0 1 N N N 63.443 -135.687 39.630 5.504 0.684 -1.415 O32 QOH 18 QOH O25 O2 O 0 1 N N N 60.785 -137.743 44.124 7.073 0.193 1.385 O25 QOH 19 QOH N23 N2 N 0 1 N N N 60.909 -138.365 41.986 9.155 -0.264 0.688 N23 QOH 20 QOH C19 C17 C 0 1 N N S 59.442 -136.998 40.141 6.475 -2.098 0.818 C19 QOH 21 QOH O20 O3 O 0 1 N N N 58.412 -136.563 39.336 6.184 -3.219 1.655 O20 QOH 22 QOH C18 C18 C 0 1 N N N 60.679 -136.991 39.340 5.422 -2.000 -0.287 C18 QOH 23 QOH N16 N3 N 0 1 N N N 61.756 -135.401 37.979 3.226 -1.028 -0.755 N16 QOH 24 QOH O33 O4 O 0 1 N N N 60.566 -133.554 37.663 2.032 0.108 0.729 O33 QOH 25 QOH C14 C19 C 0 1 N N S 61.937 -134.254 35.897 0.808 -0.669 -1.133 C14 QOH 26 QOH C34 C20 C 0 1 N N R 62.873 -133.111 35.850 1.005 -0.038 -2.512 C34 QOH 27 QOH C36 C21 C 0 1 N N N 64.138 -133.444 36.563 -0.309 -0.097 -3.293 C36 QOH 28 QOH O35 O5 O 0 1 N N N 63.195 -132.966 34.513 1.407 1.325 -2.359 O35 QOH 29 QOH N13 N4 N 0 1 N N N 60.876 -133.855 35.013 -0.308 -0.011 -0.449 N13 QOH 30 QOH C12 C22 C 0 1 N N N 59.865 -134.631 34.705 -1.572 -0.421 -0.675 C12 QOH 31 QOH O37 O6 O 0 1 N N N 59.713 -135.749 35.132 -1.786 -1.334 -1.444 O37 QOH 32 QOH C1 C23 C 0 1 N N N 58.842 -134.041 33.799 -2.721 0.256 0.028 C1 QOH 33 QOH C2 C24 C 0 1 N N N 57.558 -134.227 34.550 -4.037 -0.395 -0.401 C2 QOH 34 QOH C3 C25 C 0 1 N N N 56.601 -133.136 34.209 -5.203 0.292 0.312 C3 QOH 35 QOH C9 C26 C 0 1 N N N 50.377 -131.210 33.268 -12.649 0.400 1.165 C9 QOH 36 QOH C11 C27 C 0 1 N N N 49.403 -132.072 31.173 -15.118 0.350 1.541 C11 QOH 37 QOH C40 C28 C 0 1 N N N 48.057 -130.751 32.767 -14.197 0.002 -0.756 C40 QOH 38 QOH H1 H1 H 0 1 N N N 55.806 -133.824 36.073 -6.504 -1.417 0.147 H1 QOH 39 QOH H2 H2 H 0 1 N N N 55.626 -132.061 35.782 -6.641 -0.255 -1.195 H2 QOH 40 QOH H3 H3 H 0 1 N N N 53.460 -133.146 35.560 -7.563 0.224 1.675 H3 QOH 41 QOH H4 H4 H 0 1 N N N 54.134 -134.319 34.379 -7.699 1.385 0.333 H4 QOH 42 QOH H5 H5 H 0 1 N N N 53.822 -132.871 32.697 -9.123 -0.219 -0.911 H5 QOH 43 QOH H6 H6 H 0 1 N N N 54.754 -131.604 33.564 -8.986 -1.381 0.431 H6 QOH 44 QOH H7 H7 H 0 1 N N N 52.815 -130.519 33.860 -10.045 0.260 1.959 H7 QOH 45 QOH H8 H8 H 0 1 N N N 52.341 -131.837 34.984 -10.181 1.421 0.617 H8 QOH 46 QOH H9 H9 H 0 1 N N N 51.373 -133.116 33.138 -11.605 -0.183 -0.627 H9 QOH 47 QOH H10 H10 H 0 1 N N N 51.942 -131.891 31.953 -11.468 -1.345 0.715 H10 QOH 48 QOH H11 H11 H 0 1 N N N 48.853 -132.713 33.159 -13.915 -1.325 0.918 H11 QOH 49 QOH H12 H12 H 0 1 N N N 60.507 -134.875 39.590 4.200 -0.890 1.098 H12 QOH 50 QOH H13 H13 H 0 1 N N N 58.045 -138.532 40.390 7.885 -1.778 -0.780 H13 QOH 51 QOH H14 H14 H 0 1 N N N 59.681 -139.055 39.863 8.063 -3.339 0.056 H14 QOH 52 QOH H15 H15 H 0 1 N N N 58.964 -137.887 42.557 8.565 -1.684 2.138 H15 QOH 53 QOH H16 H16 H 0 1 N N N 59.261 -139.621 42.193 9.846 -2.232 1.025 H16 QOH 54 QOH H17 H17 H 0 1 N N N 63.255 -138.431 43.827 9.214 2.414 0.860 H17 QOH 55 QOH H18 H18 H 0 1 N N N 63.170 -137.899 42.114 8.236 2.114 -0.596 H18 QOH 56 QOH H19 H19 H 0 1 N N N 64.250 -135.897 41.756 6.119 2.579 -0.803 H19 QOH 57 QOH H20 H20 H 0 1 N N N 64.113 -136.388 44.121 6.932 2.528 2.112 H20 QOH 58 QOH H21 H21 H 0 1 N N N 62.383 -135.906 44.153 7.391 3.911 1.090 H21 QOH 59 QOH H22 H22 H 0 1 N N N 64.621 -134.133 43.412 5.401 4.761 0.152 H22 QOH 60 QOH H23 H23 H 0 1 N N N 63.922 -133.474 41.894 4.006 3.694 -0.140 H23 QOH 61 QOH H24 H24 H 0 1 N N N 62.881 -133.696 43.341 4.634 3.907 1.512 H24 QOH 62 QOH H25 H25 H 0 1 N N N 61.309 -135.404 41.883 4.869 1.260 1.601 H25 QOH 63 QOH H26 H26 H 0 1 N N N 61.490 -138.543 41.192 9.993 0.027 0.298 H26 QOH 64 QOH H27 H27 H 0 1 N N N 59.559 -136.367 41.035 6.462 -1.186 1.414 H27 QOH 65 QOH H28 H28 H 0 1 N N N 57.602 -136.559 39.832 6.813 -3.343 2.379 H28 QOH 66 QOH H29 H29 H 0 1 N N N 60.449 -137.310 38.313 4.874 -2.940 -0.352 H29 QOH 67 QOH H30 H30 H 0 1 N N N 61.405 -137.687 39.786 5.911 -1.798 -1.240 H30 QOH 68 QOH H31 H31 H 0 1 N N N 62.416 -136.042 37.587 3.253 -1.516 -1.593 H31 QOH 69 QOH H32 H32 H 0 1 N N N 62.419 -135.190 35.579 0.589 -1.731 -1.247 H32 QOH 70 QOH H33 H33 H 0 1 N N N 62.412 -132.206 36.273 1.776 -0.584 -3.055 H33 QOH 71 QOH H34 H34 H 0 1 N N N 63.932 -133.570 37.636 -1.080 0.449 -2.750 H34 QOH 72 QOH H35 H35 H 0 1 N N N 64.552 -134.379 36.157 -0.168 0.353 -4.276 H35 QOH 73 QOH H36 H36 H 0 1 N N N 64.864 -132.629 36.422 -0.615 -1.137 -3.410 H36 QOH 74 QOH H37 H37 H 0 1 N N N 63.800 -132.241 34.409 0.767 1.873 -1.883 H37 QOH 75 QOH H38 H38 H 0 1 N N N 60.911 -132.939 34.613 -0.138 0.719 0.166 H38 QOH 76 QOH H39 H39 H 0 1 N N N 58.815 -134.574 32.837 -2.599 0.152 1.106 H39 QOH 77 QOH H40 H40 H 0 1 N N N 59.043 -132.974 33.622 -2.735 1.313 -0.235 H40 QOH 78 QOH H41 H41 H 0 1 N N N 57.115 -135.197 34.279 -4.159 -0.291 -1.480 H41 QOH 79 QOH H42 H42 H 0 1 N N N 57.763 -134.207 35.631 -4.022 -1.453 -0.138 H42 QOH 80 QOH H43 H43 H 0 1 N N N 57.138 -132.180 34.124 -5.217 1.349 0.049 H43 QOH 81 QOH H44 H44 H 0 1 N N N 56.100 -133.361 33.256 -5.081 0.188 1.390 H44 QOH 82 QOH H45 H45 H 0 1 N N N 50.540 -130.199 32.866 -12.527 0.296 2.243 H45 QOH 83 QOH H46 H46 H 0 1 N N N 50.227 -131.152 34.356 -12.663 1.457 0.901 H46 QOH 84 QOH H47 H47 H 0 1 N N N 50.197 -132.827 31.078 -16.056 -0.113 1.235 H47 QOH 85 QOH H48 H48 H 0 1 N N N 48.481 -132.449 30.707 -14.953 0.170 2.603 H48 QOH 86 QOH H49 H49 H 0 1 N N N 49.716 -131.145 30.669 -15.167 1.424 1.358 H49 QOH 87 QOH H50 H50 H 0 1 N N N 47.870 -130.543 33.831 -14.246 1.076 -0.938 H50 QOH 88 QOH H51 H51 H 0 1 N N N 48.371 -129.826 32.262 -13.375 -0.426 -1.329 H51 QOH 89 QOH H52 H52 H 0 1 N N N 47.136 -131.129 32.300 -15.134 -0.461 -1.061 H52 QOH 90 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QOH C11 C10 SING N N 1 QOH C10 C40 SING N N 2 QOH C10 C9 SING N N 3 QOH C8 C9 SING N N 4 QOH C8 C7 SING N N 5 QOH C6 C7 SING N N 6 QOH C6 C5 SING N N 7 QOH C1 C2 SING N N 8 QOH C1 C12 SING N N 9 QOH C3 C2 SING N N 10 QOH C3 C4 SING N N 11 QOH O35 C34 SING N N 12 QOH C12 N13 SING N N 13 QOH C12 O37 DOUB N N 14 QOH C5 C4 SING N N 15 QOH N13 C14 SING N N 16 QOH C34 C14 SING N N 17 QOH C34 C36 SING N N 18 QOH C14 C15 SING N N 19 QOH C15 O33 DOUB N N 20 QOH C15 N16 SING N N 21 QOH N16 C17 SING N N 22 QOH C17 C18 SING N N 23 QOH C17 C31 SING N N 24 QOH O20 C19 SING N N 25 QOH C18 C19 SING N N 26 QOH O32 C31 DOUB N N 27 QOH C31 N30 SING N N 28 QOH C19 C21 SING N N 29 QOH C21 C22 SING N N 30 QOH N30 C28 SING N N 31 QOH C22 N23 SING N N 32 QOH N23 C24 SING N N 33 QOH C28 C29 SING N N 34 QOH C28 C27 SING N N 35 QOH C26 C24 SING N N 36 QOH C26 C27 SING N N 37 QOH C24 O25 DOUB N N 38 QOH C4 H1 SING N N 39 QOH C4 H2 SING N N 40 QOH C5 H3 SING N N 41 QOH C5 H4 SING N N 42 QOH C6 H5 SING N N 43 QOH C6 H6 SING N N 44 QOH C7 H7 SING N N 45 QOH C7 H8 SING N N 46 QOH C8 H9 SING N N 47 QOH C8 H10 SING N N 48 QOH C10 H11 SING N N 49 QOH C17 H12 SING N N 50 QOH C21 H13 SING N N 51 QOH C21 H14 SING N N 52 QOH C22 H15 SING N N 53 QOH C22 H16 SING N N 54 QOH C26 H17 SING N N 55 QOH C26 H18 SING N N 56 QOH C28 H19 SING N N 57 QOH C27 H20 SING N N 58 QOH C27 H21 SING N N 59 QOH C29 H22 SING N N 60 QOH C29 H23 SING N N 61 QOH C29 H24 SING N N 62 QOH N30 H25 SING N N 63 QOH N23 H26 SING N N 64 QOH C19 H27 SING N N 65 QOH O20 H28 SING N N 66 QOH C18 H29 SING N N 67 QOH C18 H30 SING N N 68 QOH N16 H31 SING N N 69 QOH C14 H32 SING N N 70 QOH C34 H33 SING N N 71 QOH C36 H34 SING N N 72 QOH C36 H35 SING N N 73 QOH C36 H36 SING N N 74 QOH O35 H37 SING N N 75 QOH N13 H38 SING N N 76 QOH C1 H39 SING N N 77 QOH C1 H40 SING N N 78 QOH C2 H41 SING N N 79 QOH C2 H42 SING N N 80 QOH C3 H43 SING N N 81 QOH C3 H44 SING N N 82 QOH C9 H45 SING N N 83 QOH C9 H46 SING N N 84 QOH C11 H47 SING N N 85 QOH C11 H48 SING N N 86 QOH C11 H49 SING N N 87 QOH C40 H50 SING N N 88 QOH C40 H51 SING N N 89 QOH C40 H52 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QOH InChI InChI 1.03 "InChI=1S/C28H52N4O6/c1-19(2)12-10-8-6-5-7-9-11-13-25(36)32-26(21(4)33)28(38)31-23-18-22(34)16-17-29-24(35)15-14-20(3)30-27(23)37/h19-23,26,33-34H,5-18H2,1-4H3,(H,29,35)(H,30,37)(H,31,38)(H,32,36)/t20-,21+,22-,23-,26-/m0/s1" QOH InChIKey InChI 1.03 UIOLVRCVADVWOP-CTVYPFPQSA-N QOH SMILES_CANONICAL CACTVS 3.385 "CC(C)CCCCCCCCCC(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@H]1C[C@@H](O)CCNC(=O)CC[C@H](C)NC1=O" QOH SMILES CACTVS 3.385 "CC(C)CCCCCCCCCC(=O)N[CH]([CH](C)O)C(=O)N[CH]1C[CH](O)CCNC(=O)CC[CH](C)NC1=O" QOH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCC(=O)NCC[C@@H](C[C@@H](C(=O)N1)NC(=O)[C@H]([C@@H](C)O)NC(=O)CCCCCCCCCC(C)C)O" QOH SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(=O)NCCC(CC(C(=O)N1)NC(=O)C(C(C)O)NC(=O)CCCCCCCCCC(C)C)O" # _pdbx_chem_comp_identifier.comp_id QOH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "11-methyl-~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]dodecanamide" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 QOH "Syrbactin inhibitor" ? ? 2 QOH HB333 ? ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QOH "Create component" 2020-07-09 PDBE QOH "Initial release" 2021-05-19 RCSB ##