data_QQL # _chem_comp.id QQL _chem_comp.name "4-methoxy-~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-4-nitro-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H33 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.549 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QQL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BGA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QQL C13 C1 C 0 1 N N S N N N 7.447 -12.577 24.571 -4.584 -2.097 -0.394 C13 QQL 1 QQL C15 C2 C 0 1 N N N N N N 5.902 -12.144 26.455 -4.707 -3.866 -2.008 C15 QQL 2 QQL C17 C3 C 0 1 N N N N N N 6.780 -11.143 24.458 -5.695 -3.069 -0.063 C17 QQL 3 QQL C20 C4 C 0 1 N N N N N N 8.320 -17.227 22.647 -3.311 2.704 -0.906 C20 QQL 4 QQL C26 C5 C 0 1 Y N N N N N 13.136 -13.301 28.931 4.429 -0.790 0.513 C26 QQL 5 QQL C28 C6 C 0 1 Y N N N N N 14.134 -12.690 31.374 6.805 -0.624 -0.503 C28 QQL 6 QQL O01 O1 O 0 1 N N N N N N 11.198 -12.395 25.805 1.887 -1.103 1.800 O01 QQL 7 QQL C02 C7 C 0 1 N N N N N N 11.848 -13.119 26.563 1.959 -0.415 0.799 C02 QQL 8 QQL N03 N1 N 0 1 N N N N N N 12.125 -14.411 26.136 0.855 0.184 0.312 N03 QQL 9 QQL C04 C8 C 0 1 N N S N N N 11.685 -14.933 24.857 -0.433 0.009 0.988 C04 QQL 10 QQL C05 C9 C 0 1 N N N N N N 12.235 -16.325 24.520 -0.557 1.028 2.122 C05 QQL 11 QQL C06 C10 C 0 1 N N N N N N 13.750 -16.338 24.234 0.503 0.739 3.187 C06 QQL 12 QQL C07 C11 C 0 1 N N N N N N 14.064 -15.727 22.869 0.461 1.831 4.258 C07 QQL 13 QQL C08 C12 C 0 1 N N N N N N 14.318 -17.776 24.364 0.220 -0.619 3.832 C08 QQL 14 QQL C09 C13 C 0 1 N N N N N N 10.144 -14.970 24.841 -1.552 0.217 0.000 C09 QQL 15 QQL N10 N2 N 0 1 N N N N N N 9.514 -14.757 23.664 -2.834 0.104 0.401 N10 QQL 16 QQL C11 C14 C 0 1 N N S N N N 8.015 -14.799 23.440 -3.921 0.306 -0.560 C11 QQL 17 QQL C12 C15 C 0 1 N N N N N N 7.372 -13.427 23.253 -5.069 -0.654 -0.240 C12 QQL 18 QQL C14 C16 C 0 1 N N N N N N 6.727 -13.269 25.744 -4.243 -2.399 -1.871 C14 QQL 19 QQL N16 N3 N 0 1 N N N N N N 5.898 -10.931 25.531 -5.744 -4.046 -0.985 N16 QQL 20 QQL O18 O2 O 0 1 N N N N N N 7.023 -10.362 23.538 -6.433 -2.981 0.896 O18 QQL 21 QQL C19 C17 C 0 1 N N N N N N 7.799 -15.790 22.282 -4.422 1.749 -0.466 C19 QQL 22 QQL N21 N4 N 1 1 N N N N N N 7.454 -18.457 22.122 -3.791 4.086 -0.816 N21 QQL 23 QQL O22 O3 O 0 1 N N N N N N 7.952 -19.563 21.979 -4.407 4.454 0.168 O22 QQL 24 QQL O23 O4 O -1 1 N N N N N N 6.299 -18.157 21.892 -3.574 4.866 -1.726 O23 QQL 25 QQL O24 O5 O 0 1 N N N N N N 9.552 -15.201 25.894 -1.298 0.485 -1.155 O24 QQL 26 QQL C25 C18 C 0 1 Y N N N N N 12.371 -12.616 27.987 3.250 -0.239 0.120 C25 QQL 27 QQL C27 C19 C 0 1 Y N N N N N 13.401 -12.500 30.099 5.425 -0.378 -0.403 C27 QQL 28 QQL O29 O6 O 0 1 N N N N N N 14.752 -13.926 31.636 7.427 -1.409 0.414 O29 QQL 29 QQL C30 C20 C 0 1 N N N N N N 14.523 -14.536 32.943 8.832 -1.614 0.246 C30 QQL 30 QQL C31 C21 C 0 1 Y N N N N N 14.169 -11.623 32.293 7.524 -0.064 -1.540 C31 QQL 31 QQL C32 C22 C 0 1 Y N N N N N 13.496 -10.364 31.995 6.892 0.739 -2.479 C32 QQL 32 QQL C33 C23 C 0 1 Y N N N N N 12.790 -10.171 30.791 5.541 0.990 -2.396 C33 QQL 33 QQL C34 C24 C 0 1 Y N N N N N 12.741 -11.249 29.823 4.792 0.438 -1.360 C34 QQL 34 QQL N35 N5 N 0 1 Y N N N N N 12.126 -11.345 28.542 3.461 0.515 -1.020 N35 QQL 35 QQL H1 H1 H 0 1 N N N N N N 8.506 -12.443 24.837 -3.717 -2.277 0.242 H1 QQL 36 QQL H2 H2 H 0 1 N N N N N N 6.370 -11.884 27.416 -5.122 -4.040 -3.001 H2 QQL 37 QQL H3 H3 H 0 1 N N N N N N 4.872 -12.487 26.631 -3.873 -4.544 -1.825 H3 QQL 38 QQL H4 H4 H 0 1 N N N N N N 8.366 -17.296 23.744 -2.445 2.578 -0.256 H4 QQL 39 QQL H5 H5 H 0 1 N N N N N N 9.333 -17.330 22.230 -3.029 2.484 -1.935 H5 QQL 40 QQL H6 H6 H 0 1 N N N N N N 13.489 -14.314 28.802 4.580 -1.426 1.373 H6 QQL 41 QQL H7 H7 H 0 1 N N N N N N 12.653 -15.009 26.739 0.913 0.732 -0.486 H7 QQL 42 QQL H8 H8 H 0 1 N N N N N N 12.010 -14.244 24.063 -0.493 -1.000 1.398 H8 QQL 43 QQL H9 H9 H 0 1 N N N N N N 11.710 -16.700 23.629 -0.408 2.033 1.725 H9 QQL 44 QQL H10 H10 H 0 1 N N N N N N 12.036 -16.993 25.371 -1.549 0.957 2.568 H10 QQL 45 QQL H11 H11 H 0 1 N N N N N N 14.239 -15.718 25.000 1.489 0.722 2.723 H11 QQL 46 QQL H12 H12 H 0 1 N N N N N N 13.646 -14.711 22.817 1.216 1.624 5.017 H12 QQL 47 QQL H13 H13 H 0 1 N N N N N N 15.154 -15.682 22.729 0.663 2.798 3.799 H13 QQL 48 QQL H14 H14 H 0 1 N N N N N N 13.618 -16.348 22.078 -0.525 1.847 4.722 H14 QQL 49 QQL H15 H15 H 0 1 N N N N N N 14.072 -18.180 25.357 0.249 -1.397 3.069 H15 QQL 50 QQL H16 H16 H 0 1 N N N N N N 13.875 -18.417 23.588 0.974 -0.826 4.590 H16 QQL 51 QQL H17 H17 H 0 1 N N N N N N 15.411 -17.751 24.239 -0.767 -0.603 4.295 H17 QQL 52 QQL H18 H18 H 0 1 N N N N N N 10.088 -14.554 22.871 -3.036 -0.111 1.325 H18 QQL 53 QQL H19 H19 H 0 1 N N N N N N 7.564 -15.249 24.337 -3.556 0.113 -1.568 H19 QQL 54 QQL H20 H20 H 0 1 N N N N N N 7.899 -12.891 22.450 -5.896 -0.473 -0.927 H20 QQL 55 QQL H21 H21 H 0 1 N N N N N N 6.317 -13.561 22.973 -5.405 -0.490 0.784 H21 QQL 56 QQL H22 H22 H 0 1 N N N N N N 6.058 -14.059 25.372 -4.805 -1.748 -2.542 H22 QQL 57 QQL H23 H23 H 0 1 N N N N N N 7.459 -13.706 26.439 -3.172 -2.310 -2.050 H23 QQL 58 QQL H24 H24 H 0 1 N N N N N N 5.349 -10.107 25.668 -6.383 -4.776 -0.976 H24 QQL 59 QQL H25 H25 H 0 1 N N N N N N 8.341 -15.428 21.396 -4.705 1.970 0.563 H25 QQL 60 QQL H26 H26 H 0 1 N N N N N N 6.724 -15.847 22.056 -5.289 1.876 -1.116 H26 QQL 61 QQL H27 H27 H 0 1 N N N N N N 15.065 -15.491 33.003 9.346 -0.654 0.285 H27 QQL 62 QQL H28 H28 H 0 1 N N N N N N 14.884 -13.860 33.732 9.202 -2.258 1.044 H28 QQL 63 QQL H29 H29 H 0 1 N N N N N N 13.447 -14.717 33.080 9.017 -2.087 -0.718 H29 QQL 64 QQL H30 H30 H 0 1 N N N N N N 14.699 -11.738 33.227 8.585 -0.250 -1.620 H30 QQL 65 QQL H31 H31 H 0 1 N N N N N N 13.540 -9.560 32.715 7.467 1.171 -3.285 H31 QQL 66 QQL H32 H32 H 0 1 N N N N N N 12.292 -9.233 30.592 5.062 1.616 -3.134 H32 QQL 67 QQL H33 H33 H 0 1 N N N N N N 11.599 -10.618 28.102 2.782 1.012 -1.502 H33 QQL 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QQL O23 N21 SING N N 1 QQL O22 N21 DOUB N N 2 QQL N21 C20 SING N N 3 QQL C19 C20 SING N N 4 QQL C19 C11 SING N N 5 QQL C07 C06 SING N N 6 QQL C12 C11 SING N N 7 QQL C12 C13 SING N N 8 QQL C11 N10 SING N N 9 QQL O18 C17 DOUB N N 10 QQL N10 C09 SING N N 11 QQL C06 C08 SING N N 12 QQL C06 C05 SING N N 13 QQL C17 C13 SING N N 14 QQL C17 N16 SING N N 15 QQL C05 C04 SING N N 16 QQL C13 C14 SING N N 17 QQL C09 C04 SING N N 18 QQL C09 O24 DOUB N N 19 QQL C04 N03 SING N N 20 QQL N16 C15 SING N N 21 QQL C14 C15 SING N N 22 QQL O01 C02 DOUB N N 23 QQL N03 C02 SING N N 24 QQL C02 C25 SING N N 25 QQL C25 N35 SING Y N 26 QQL C25 C26 DOUB Y N 27 QQL N35 C34 SING Y N 28 QQL C26 C27 SING Y N 29 QQL C34 C27 DOUB Y N 30 QQL C34 C33 SING Y N 31 QQL C27 C28 SING Y N 32 QQL C33 C32 DOUB Y N 33 QQL C28 O29 SING N N 34 QQL C28 C31 DOUB Y N 35 QQL O29 C30 SING N N 36 QQL C32 C31 SING Y N 37 QQL C13 H1 SING N N 38 QQL C15 H2 SING N N 39 QQL C15 H3 SING N N 40 QQL C20 H4 SING N N 41 QQL C20 H5 SING N N 42 QQL C26 H6 SING N N 43 QQL N03 H7 SING N N 44 QQL C04 H8 SING N N 45 QQL C05 H9 SING N N 46 QQL C05 H10 SING N N 47 QQL C06 H11 SING N N 48 QQL C07 H12 SING N N 49 QQL C07 H13 SING N N 50 QQL C07 H14 SING N N 51 QQL C08 H15 SING N N 52 QQL C08 H16 SING N N 53 QQL C08 H17 SING N N 54 QQL N10 H18 SING N N 55 QQL C11 H19 SING N N 56 QQL C12 H20 SING N N 57 QQL C12 H21 SING N N 58 QQL C14 H22 SING N N 59 QQL C14 H23 SING N N 60 QQL N16 H24 SING N N 61 QQL C19 H25 SING N N 62 QQL C19 H26 SING N N 63 QQL C30 H27 SING N N 64 QQL C30 H28 SING N N 65 QQL C30 H29 SING N N 66 QQL C31 H30 SING N N 67 QQL C32 H31 SING N N 68 QQL C33 H32 SING N N 69 QQL N35 H33 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QQL InChI InChI 1.06 "InChI=1S/C24H33N5O6/c1-14(2)11-19(28-24(32)20-13-17-18(27-20)5-4-6-21(17)35-3)23(31)26-16(8-10-29(33)34)12-15-7-9-25-22(15)30/h4-6,13-16,19,27H,7-12H2,1-3H3,(H,25,30)(H,26,31)(H,28,32)/t15-,16+,19-/m0/s1" QQL InChIKey InChI 1.06 FFTZSDWTZYJKTH-FCEWJHQRSA-N QQL SMILES_CANONICAL CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CC[N+]([O-])=O)C[C@@H]3CCNC3=O" QQL SMILES CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](CC[N+]([O-])=O)C[CH]3CCNC3=O" QQL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@H](CC[N+](=O)[O-])C[C@@H]1CCNC1=O)NC(=O)c2cc3c([nH]2)cccc3OC" QQL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC[N+](=O)[O-])CC1CCNC1=O)NC(=O)c2cc3c([nH]2)cccc3OC" # _pdbx_chem_comp_identifier.comp_id QQL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-methoxy-~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-4-nitro-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QQL "Create component" 2022-11-11 PDBE QQL "Modify formula" 2023-05-15 PDBE QQL "Initial release" 2023-11-08 RCSB QQL "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id QQL _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #