data_QQX # _chem_comp.id QQX _chem_comp.name "[(3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C10 H12 N5 O5 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-30 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.272 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QQX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YPC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QQX OP3 OP3 O 0 1 N N N 4.007 -1.093 21.470 2.466 2.705 -1.318 OP3 QQX 1 QQX S1P S1P S 0 1 N N N 1.351 -1.913 21.804 3.464 2.247 1.325 S1P QQX 2 QQX "O5'" "O5'" O 0 1 N N N 4.485 -3.196 27.310 2.400 -4.410 -0.521 "O5'" QQX 3 QQX "C5'" "C5'" C 0 1 N N N 4.122 -1.859 27.181 2.599 -3.224 0.251 "C5'" QQX 4 QQX "C4'" "C4'" C 0 1 N N R 4.325 -1.351 25.790 2.012 -2.024 -0.496 "C4'" QQX 5 QQX "O4'" "O4'" O 0 1 N N N 5.619 -1.611 25.365 0.583 -2.150 -0.575 "O4'" QQX 6 QQX "C3'" "C3'" C 0 1 N N R 3.439 -1.985 24.813 2.318 -0.725 0.278 "C3'" QQX 7 QQX "O3'" "O3'" O 0 1 N N N 3.106 -1.120 23.828 2.996 0.179 -0.628 "O3'" QQX 8 QQX "C2'" "C2'" C 0 1 N N R 4.243 -3.069 24.177 0.920 -0.124 0.566 "C2'" QQX 9 QQX "O2'" "O2'" O 0 1 N N N 3.729 -3.209 22.908 0.932 1.290 0.343 "O2'" QQX 10 QQX "C1'" "C1'" C 0 1 N N R 5.615 -2.519 24.290 0.037 -0.815 -0.499 "C1'" QQX 11 QQX N9 N9 N 0 1 Y N N 6.661 -3.488 24.542 -1.361 -0.854 -0.063 N9 QQX 12 QQX C8 C8 C 0 1 Y N N 6.696 -4.454 25.559 -1.956 -1.850 0.651 C8 QQX 13 QQX N7 N7 N 0 1 Y N N 7.828 -5.209 25.541 -3.206 -1.559 0.866 N7 QQX 14 QQX C5 C5 C 0 1 Y N N 8.606 -4.733 24.470 -3.492 -0.360 0.304 C5 QQX 15 QQX C6 C6 C 0 1 Y N N 9.877 -5.086 23.941 -4.644 0.440 0.215 C6 QQX 16 QQX N6 N6 N 0 1 N N N 10.649 -6.142 24.517 -5.835 0.033 0.790 N6 QQX 17 QQX N1 N1 N 0 1 Y N N 10.297 -4.366 22.881 -4.562 1.598 -0.433 N1 QQX 18 QQX C2 C2 C 0 1 Y N N 9.607 -3.380 22.337 -3.430 1.995 -0.984 C2 QQX 19 QQX C4 C4 C 0 1 Y N N 7.873 -3.646 23.854 -2.311 0.109 -0.295 C4 QQX 20 QQX N3 N3 N 0 1 Y N N 8.423 -3.027 22.799 -2.327 1.278 -0.927 N3 QQX 21 QQX P P P 0 1 N N S 3.140 -1.843 22.495 2.456 1.633 -0.116 P QQX 22 QQX HP3 HP3 H 0 1 N N N 3.470 -0.834 20.730 3.347 2.899 -1.664 HP3 QQX 23 QQX "H5'" "H5'" H 0 1 N N N 4.341 -3.479 28.205 2.748 -5.212 -0.108 "H5'" QQX 24 QQX "H5'1" "H5'1" H 0 0 N N N 3.059 -1.753 27.445 2.102 -3.331 1.215 "H5'1" QQX 25 QQX "H5'2" "H5'2" H 0 0 N N N 4.733 -1.258 27.870 3.666 -3.068 0.408 "H5'2" QQX 26 QQX "H4'" "H4'" H 0 1 N N N 4.140 -0.267 25.786 2.436 -1.969 -1.499 "H4'" QQX 27 QQX "H3'" "H3'" H 0 1 N N N 2.556 -2.411 25.312 2.894 -0.908 1.185 "H3'" QQX 28 QQX "H1'" "H1'" H 0 1 N N N 5.849 -1.981 23.359 0.127 -0.308 -1.460 "H1'" QQX 29 QQX "H2'" "H2'" H 0 1 N N N 4.155 -3.998 24.760 0.591 -0.360 1.578 "H2'" QQX 30 QQX H8 H8 H 0 1 N N N 5.905 -4.585 26.283 -1.463 -2.750 0.990 H8 QQX 31 QQX H61N H61N H 0 0 N N N 11.508 -6.240 24.015 -5.882 -0.814 1.260 H61N QQX 32 QQX H62N H62N H 0 0 N N N 10.845 -5.928 25.474 -6.623 0.595 0.722 H62N QQX 33 QQX H2 H2 H 0 1 N N N 10.022 -2.850 21.493 -3.408 2.943 -1.501 H2 QQX 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QQX OP3 P SING N N 1 QQX S1P P DOUB N N 2 QQX "O5'" "C5'" SING N N 3 QQX "C5'" "C4'" SING N N 4 QQX "C4'" "O4'" SING N N 5 QQX "C4'" "C3'" SING N N 6 QQX "O4'" "C1'" SING N N 7 QQX "C3'" "O3'" SING N N 8 QQX "C3'" "C2'" SING N N 9 QQX "O3'" P SING N N 10 QQX "C2'" "O2'" SING N N 11 QQX "C2'" "C1'" SING N N 12 QQX "O2'" P SING N N 13 QQX "C1'" N9 SING N N 14 QQX N9 C8 SING Y N 15 QQX N9 C4 SING Y N 16 QQX C8 N7 DOUB Y N 17 QQX N7 C5 SING Y N 18 QQX C5 C6 DOUB Y N 19 QQX C5 C4 SING Y N 20 QQX N3 C4 DOUB Y N 21 QQX C6 N6 SING N N 22 QQX C6 N1 SING Y N 23 QQX N1 C2 DOUB Y N 24 QQX C2 N3 SING Y N 25 QQX OP3 HP3 SING N N 26 QQX "O5'" "H5'" SING N N 27 QQX "C5'" "H5'1" SING N N 28 QQX "C5'" "H5'2" SING N N 29 QQX "C4'" "H4'" SING N N 30 QQX "C3'" "H3'" SING N N 31 QQX "C1'" "H1'" SING N N 32 QQX "C2'" "H2'" SING N N 33 QQX C8 H8 SING N N 34 QQX N6 H61N SING N N 35 QQX N6 H62N SING N N 36 QQX C2 H2 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QQX SMILES ACDLabs 12.01 "S=P1(OC2C(OC(C2O1)CO)n3c4ncnc(N)c4nc3)O" QQX InChI InChI 1.03 "InChI=1S/C10H12N5O5PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7-6(4(1-16)18-10)19-21(17,22)20-7/h2-4,6-7,10,16H,1H2,(H,17,22)(H2,11,12,13)/t4-,6-,7-,10-,21+/m1/s1" QQX InChIKey InChI 1.03 OMSUUENXGWGOLC-LHKKBNDGSA-N QQX SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H]4O[P@](O)(=S)O[C@@H]34" QQX SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH]4O[P](O)(=S)O[CH]34" QQX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[P@](=S)(O4)O)N" QQX SMILES "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)CO)OP(=S)(O4)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QQX "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3aR,4R,6R,6aR)-4-(6-amino-9H-purin-9-yl)-6-(hydroxymethyl)tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-2-ol 2-sulfide" QQX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QQX "Create component" 2012-10-30 EBI QQX "Initial release" 2013-07-10 RCSB QQX "Modify descriptor" 2014-09-05 RCSB QQX "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QQX _pdbx_chem_comp_synonyms.name "ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##