data_QRJ
#
_chem_comp.id QRJ
_chem_comp.name "{3-[(5R,7S,8S)-8-azaniumyl-8-carboxy-2-azaspiro[4.4]nonan-2-ium-7-yl]propyl}(trihydroxy)borate(1-)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H26 B N2 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2019-12-11
_chem_comp.pdbx_modified_date 2020-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 289.156
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QRJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6V7F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QRJ O2 O1 O 0 1 N N N 16.526 7.039 24.063 -0.429 -3.524 0.262 O2 QRJ 1
QRJ C8 C1 C 0 1 N N N 15.371 7.414 23.822 -0.982 -2.499 -0.405 C8 QRJ 2
QRJ O3 O2 O 0 1 N N N 15.064 8.550 23.230 -1.046 -2.527 -1.611 O3 QRJ 3
QRJ C7 C2 C 0 1 N N S 14.122 6.589 24.216 -1.522 -1.312 0.351 C7 QRJ 4
QRJ N N1 N 1 1 N N N 12.899 7.299 23.717 -2.056 -1.745 1.649 N QRJ 5
QRJ C6 C3 C 0 1 N N N 14.091 6.525 25.758 -2.630 -0.620 -0.473 C6 QRJ 6
QRJ C5 C4 C 0 1 N N R 14.275 5.040 26.191 -2.404 0.877 -0.220 C5 QRJ 7
QRJ C11 C5 C 0 1 N N N 13.019 4.469 26.876 -3.080 1.341 1.069 C11 QRJ 8
QRJ N1 N2 N 1 1 N N N 13.176 4.988 28.293 -3.995 2.446 0.693 N1 QRJ 9
QRJ C10 C6 C 0 1 N N N 14.627 4.895 28.639 -4.331 2.226 -0.738 C10 QRJ 10
QRJ C9 C7 C 0 1 N N N 15.329 4.898 27.308 -2.993 1.730 -1.350 C9 QRJ 11
QRJ C4 C8 C 0 1 N N N 14.749 4.337 24.902 -0.877 1.024 -0.145 C4 QRJ 12
QRJ C3 C9 C 0 1 N N S 14.139 5.096 23.721 -0.409 -0.269 0.559 C3 QRJ 13
QRJ C2 C10 C 0 1 N N N 14.873 4.841 22.398 0.896 -0.763 -0.067 C2 QRJ 14
QRJ C1 C11 C 0 1 N N N 14.528 3.536 21.703 2.022 0.222 0.256 C1 QRJ 15
QRJ C C12 C 0 1 N N N 15.404 3.252 20.485 3.327 -0.273 -0.370 C QRJ 16
QRJ B B1 B -1 1 N N N 14.966 1.897 19.835 4.502 0.755 -0.033 B QRJ 17
QRJ O4 O3 O 0 1 N N N 13.529 1.898 19.489 5.668 0.314 -0.592 O4 QRJ 18
QRJ O1 O4 O 0 1 N N N 15.691 1.603 18.564 4.190 1.986 -0.541 O1 QRJ 19
QRJ O O5 O 0 1 N N N 15.200 0.731 20.698 4.653 0.847 1.323 O QRJ 20
QRJ H1 H1 H 0 1 N N N 17.142 7.694 23.756 -0.096 -4.263 -0.266 H1 QRJ 21
QRJ H2 H2 H 0 1 N N N 12.906 8.245 24.042 -1.318 -2.165 2.194 H2 QRJ 22
QRJ H3 H3 H 0 1 N N N 12.893 7.290 22.717 -2.426 -0.947 2.144 H3 QRJ 23
QRJ H4 H4 H 0 1 N N N 12.082 6.836 24.059 -2.792 -2.420 1.503 H4 QRJ 24
QRJ H5 H5 H 0 1 N N N 14.906 7.137 26.172 -2.518 -0.850 -1.533 H5 QRJ 25
QRJ H6 H6 H 0 1 N N N 13.126 6.903 26.126 -3.615 -0.923 -0.118 H6 QRJ 26
QRJ H7 H7 H 0 1 N N N 12.099 4.851 26.409 -3.647 0.521 1.510 H7 QRJ 27
QRJ H8 H8 H 0 1 N N N 13.014 3.369 26.850 -2.332 1.700 1.776 H8 QRJ 28
QRJ H9 H9 H 0 1 N N N 12.872 5.939 28.345 -4.831 2.412 1.257 H9 QRJ 29
QRJ H10 H10 H 0 1 N N N 12.637 4.430 28.924 -3.532 3.335 0.809 H10 QRJ 30
QRJ H11 H11 H 0 1 N N N 14.838 3.965 29.188 -5.104 1.464 -0.838 H11 QRJ 31
QRJ H12 H12 H 0 1 N N N 14.939 5.758 29.246 -4.648 3.158 -1.205 H12 QRJ 32
QRJ H13 H13 H 0 1 N N N 15.880 3.955 27.179 -2.339 2.571 -1.581 H13 QRJ 33
QRJ H14 H14 H 0 1 N N N 16.032 5.743 27.263 -3.175 1.124 -2.237 H14 QRJ 34
QRJ H15 H15 H 0 1 N N N 14.407 3.292 24.895 -0.451 1.089 -1.146 H15 QRJ 35
QRJ H16 H16 H 0 1 N N N 15.847 4.364 24.840 -0.606 1.901 0.442 H16 QRJ 36
QRJ H17 H17 H 0 1 N N N 13.095 4.770 23.604 -0.266 -0.083 1.624 H17 QRJ 37
QRJ H18 H18 H 0 1 N N N 15.954 4.840 22.604 1.145 -1.744 0.338 H18 QRJ 38
QRJ H19 H19 H 0 1 N N N 14.631 5.666 21.711 0.776 -0.836 -1.148 H19 QRJ 39
QRJ H20 H20 H 0 1 N N N 13.479 3.581 21.376 1.773 1.203 -0.149 H20 QRJ 40
QRJ H21 H21 H 0 1 N N N 14.653 2.713 22.423 2.142 0.295 1.337 H21 QRJ 41
QRJ H22 H22 H 0 1 N N N 16.457 3.186 20.797 3.576 -1.254 0.035 H22 QRJ 42
QRJ H23 H23 H 0 1 N N N 15.289 4.065 19.753 3.207 -0.345 -1.451 H23 QRJ 43
QRJ H24 H24 H 0 1 N N N 13.016 2.081 20.267 5.951 -0.556 -0.277 H24 QRJ 44
QRJ H25 H25 H 0 1 N N N 16.627 1.590 18.728 3.372 2.361 -0.187 H25 QRJ 45
QRJ H26 H26 H 0 1 N N N 14.760 0.859 21.530 5.351 1.455 1.601 H26 QRJ 46
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QRJ O1 B SING N N 1
QRJ O4 B SING N N 2
QRJ B C SING N N 3
QRJ B O SING N N 4
QRJ C C1 SING N N 5
QRJ C1 C2 SING N N 6
QRJ C2 C3 SING N N 7
QRJ O3 C8 DOUB N N 8
QRJ N C7 SING N N 9
QRJ C3 C7 SING N N 10
QRJ C3 C4 SING N N 11
QRJ C8 O2 SING N N 12
QRJ C8 C7 SING N N 13
QRJ C7 C6 SING N N 14
QRJ C4 C5 SING N N 15
QRJ C6 C5 SING N N 16
QRJ C5 C11 SING N N 17
QRJ C5 C9 SING N N 18
QRJ C11 N1 SING N N 19
QRJ C9 C10 SING N N 20
QRJ N1 C10 SING N N 21
QRJ O2 H1 SING N N 22
QRJ N H2 SING N N 23
QRJ N H3 SING N N 24
QRJ N H4 SING N N 25
QRJ C6 H5 SING N N 26
QRJ C6 H6 SING N N 27
QRJ C11 H7 SING N N 28
QRJ C11 H8 SING N N 29
QRJ N1 H9 SING N N 30
QRJ N1 H10 SING N N 31
QRJ C10 H11 SING N N 32
QRJ C10 H12 SING N N 33
QRJ C9 H13 SING N N 34
QRJ C9 H14 SING N N 35
QRJ C4 H15 SING N N 36
QRJ C4 H16 SING N N 37
QRJ C3 H17 SING N N 38
QRJ C2 H18 SING N N 39
QRJ C2 H19 SING N N 40
QRJ C1 H20 SING N N 41
QRJ C1 H21 SING N N 42
QRJ C H22 SING N N 43
QRJ C H23 SING N N 44
QRJ O4 H24 SING N N 45
QRJ O1 H25 SING N N 46
QRJ O H26 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QRJ SMILES ACDLabs 12.01 "OC(C2(CC1(C[NH2+]CC1)CC2CCC[B-](O)(O)O)[NH3+])=O"
QRJ InChI InChI 1.03 "InChI=1S/C12H24BN2O5/c14-12(10(16)17)7-11(3-5-15-8-11)6-9(12)2-1-4-13(18,19)20/h9,15,18-20H,1-8,14H2,(H,16,17)/q-1/p+2/t9-,11-,12-/m0/s1"
QRJ InChIKey InChI 1.03 IOCRPFIKFQALKS-DLOVCJGASA-P
QRJ SMILES_CANONICAL CACTVS 3.385 "[NH3+][C@]1(C[C@]2(CC[NH2+]C2)C[C@@H]1CCC[B-](O)(O)O)C(O)=O"
QRJ SMILES CACTVS 3.385 "[NH3+][C]1(C[C]2(CC[NH2+]C2)C[CH]1CCC[B-](O)(O)O)C(O)=O"
QRJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-](CCC[C@H]1C[C@@]2(CC[NH2+]C2)C[C@]1(C(=O)O)[NH3+])(O)(O)O"
QRJ SMILES "OpenEye OEToolkits" 2.0.7 "[B-](CCCC1CC2(CC[NH2+]C2)CC1(C(=O)O)[NH3+])(O)(O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QRJ "SYSTEMATIC NAME" ACDLabs 12.01 "{3-[(5R,7S,8S)-8-azaniumyl-8-carboxy-2-azaspiro[4.4]nonan-2-ium-7-yl]propyl}(trihydroxy)borate(1-)"
QRJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(5~{R},7~{S},8~{S})-8-azaniumyl-8-carboxy-2-azoniaspiro[4.4]nonan-7-yl]propyl-tris(oxidanyl)boranuide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QRJ "Create component" 2019-12-11 RCSB
QRJ "Initial release" 2020-05-06 RCSB
##