data_QRT # _chem_comp.id QRT _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[6-aminocarbonyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N3 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-31 _chem_comp.pdbx_modified_date 2022-02-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QRT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QRT P P1 P 0 1 N N N 12.258 13.348 42.290 -4.622 0.791 -0.407 P QRT 1 QRT O1P O1 O 0 1 N N N 10.965 13.225 43.051 -4.481 2.074 0.556 O1P QRT 2 QRT O2P O2 O 0 1 N N N 12.580 14.803 41.981 -5.622 -0.142 0.159 O2P QRT 3 QRT O3P O3 O 0 1 N N N 13.417 12.613 42.927 -5.098 1.267 -1.869 O3P QRT 4 QRT "O5'" O4 O 0 1 N N N 11.882 12.659 40.883 -3.199 0.047 -0.521 "O5'" QRT 5 QRT "C5'" C1 C 0 1 N N N 12.886 12.402 39.920 -2.558 -0.583 0.590 "C5'" QRT 6 QRT "C4'" C2 C 0 1 N N R 12.158 11.873 38.689 -1.229 -1.189 0.136 "C4'" QRT 7 QRT "O4'" O5 O 0 1 N N N 13.082 11.764 37.597 -0.280 -0.146 -0.175 "O4'" QRT 8 QRT "C1'" C3 C 0 1 N N R 13.281 10.373 37.241 1.017 -0.776 -0.099 "C1'" QRT 9 QRT C4 C4 C 0 1 N N N 17.380 9.493 36.614 3.969 2.146 0.519 C4 QRT 10 QRT N3 N1 N 0 1 N N N 16.917 9.937 37.809 2.869 2.078 1.298 N3 QRT 11 QRT C2 C5 C 0 1 N N N 15.641 10.219 38.049 1.938 1.133 1.080 C2 QRT 12 QRT N1 N2 N 0 1 N N N 14.727 10.134 37.029 2.063 0.231 0.092 N1 QRT 13 QRT C6 C6 C 0 1 N N N 15.195 9.711 35.756 3.158 0.238 -0.745 C6 QRT 14 QRT C5 C7 C 0 1 N N N 16.516 9.375 35.550 4.128 1.172 -0.568 C5 QRT 15 QRT "C2'" C8 C 0 1 N N R 12.602 9.579 38.344 0.933 -1.705 1.132 "C2'" QRT 16 QRT "C3'" C9 C 0 1 N N S 11.536 10.507 38.863 -0.578 -1.983 1.291 "C3'" QRT 17 QRT "O3'" O6 O 0 1 N N N 10.299 10.386 38.107 -0.848 -3.380 1.152 "O3'" QRT 18 QRT "O2'" O7 O 0 1 N N N 12.002 8.390 37.828 1.644 -2.921 0.891 "O2'" QRT 19 QRT O4 O8 O 0 1 N N N 18.628 9.291 36.504 4.811 3.003 0.710 O4 QRT 20 QRT O2 O9 O 0 1 N N N 15.305 10.676 39.147 0.957 1.093 1.797 O2 QRT 21 QRT C1 C10 C 0 1 N N N 14.320 9.884 34.596 3.275 -0.766 -1.831 C1 QRT 22 QRT N10 N3 N 0 1 N N N 14.083 8.771 33.937 2.852 -0.467 -3.075 N10 QRT 23 QRT O11 O10 O 0 1 N N N 13.938 11.009 34.265 3.753 -1.859 -1.598 O11 QRT 24 QRT H1 H1 H 0 1 N N N 10.597 14.089 43.192 -3.841 2.730 0.246 H1 QRT 25 QRT H2 H2 H 0 1 N N N 14.154 13.205 43.022 -5.950 1.724 -1.876 H2 QRT 26 QRT H3 H3 H 0 1 N N N 13.595 11.651 40.298 -2.373 0.156 1.370 H3 QRT 27 QRT H4 H4 H 0 1 N N N 13.428 13.328 39.676 -3.202 -1.370 0.982 H4 QRT 28 QRT H5 H5 H 0 1 N N N 11.363 12.586 38.426 -1.383 -1.835 -0.729 H5 QRT 29 QRT H6 H6 H 0 1 N N N 12.752 10.167 36.299 1.209 -1.357 -1.001 H6 QRT 30 QRT H7 H7 H 0 1 N N N 17.574 10.059 38.553 2.750 2.714 2.020 H7 QRT 31 QRT H8 H8 H 0 1 N N N 16.861 9.031 34.586 4.995 1.197 -1.211 H8 QRT 32 QRT H9 H9 H 0 1 N N N 13.325 9.349 39.141 1.324 -1.203 2.017 H9 QRT 33 QRT H10 H10 H 0 1 N N N 11.358 10.312 39.931 -0.935 -1.618 2.254 H10 QRT 34 QRT H11 H11 H 0 1 N N N 9.651 10.984 38.461 -0.462 -3.926 1.851 H11 QRT 35 QRT H12 H12 H 0 1 N N N 11.585 7.912 38.536 1.624 -3.542 1.632 H12 QRT 36 QRT H13 H13 H 0 1 N N N 13.551 8.795 33.090 2.470 0.405 -3.260 H13 QRT 37 QRT H14 H14 H 0 1 N N N 14.434 7.901 34.283 2.929 -1.124 -3.784 H14 QRT 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QRT N10 C1 SING N N 1 QRT O11 C1 DOUB N N 2 QRT C1 C6 SING N N 3 QRT C5 C6 DOUB N N 4 QRT C5 C4 SING N N 5 QRT C6 N1 SING N N 6 QRT O4 C4 DOUB N N 7 QRT C4 N3 SING N N 8 QRT N1 "C1'" SING N N 9 QRT N1 C2 SING N N 10 QRT "C1'" "O4'" SING N N 11 QRT "C1'" "C2'" SING N N 12 QRT "O4'" "C4'" SING N N 13 QRT N3 C2 SING N N 14 QRT "O2'" "C2'" SING N N 15 QRT C2 O2 DOUB N N 16 QRT "O3'" "C3'" SING N N 17 QRT "C2'" "C3'" SING N N 18 QRT "C4'" "C3'" SING N N 19 QRT "C4'" "C5'" SING N N 20 QRT "C5'" "O5'" SING N N 21 QRT "O5'" P SING N N 22 QRT O2P P DOUB N N 23 QRT P O3P SING N N 24 QRT P O1P SING N N 25 QRT O1P H1 SING N N 26 QRT O3P H2 SING N N 27 QRT "C5'" H3 SING N N 28 QRT "C5'" H4 SING N N 29 QRT "C4'" H5 SING N N 30 QRT "C1'" H6 SING N N 31 QRT N3 H7 SING N N 32 QRT C5 H8 SING N N 33 QRT "C2'" H9 SING N N 34 QRT "C3'" H10 SING N N 35 QRT "O3'" H11 SING N N 36 QRT "O2'" H12 SING N N 37 QRT N10 H13 SING N N 38 QRT N10 H14 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QRT InChI InChI 1.03 "InChI=1S/C10H14N3O10P/c11-8(17)3-1-5(14)12-10(18)13(3)9-7(16)6(15)4(23-9)2-22-24(19,20)21/h1,4,6-7,9,15-16H,2H2,(H2,11,17)(H,12,14,18)(H2,19,20,21)/t4-,6-,7-,9-/m1/s1" QRT InChIKey InChI 1.03 NQGAULDDRYFBMS-FJGDRVTGSA-N QRT SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" QRT SMILES CACTVS 3.385 "NC(=O)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" QRT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=O)N" QRT SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=O)N" # _pdbx_chem_comp_identifier.comp_id QRT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[6-aminocarbonyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QRT "Create component" 2020-07-31 PDBE QRT "Initial release" 2022-02-23 RCSB ##