data_QRZ # _chem_comp.id QRZ _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[6-carbamothioyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N3 O9 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-31 _chem_comp.pdbx_modified_date 2022-02-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.272 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QRZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZX3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QRZ C2 C1 C 0 1 N N N 15.617 10.214 38.008 1.775 -1.281 -1.202 C2 QRZ 1 QRZ C3 C2 C 0 1 N N N 14.278 9.788 34.550 3.248 0.826 1.482 C3 QRZ 2 QRZ O3P O1 O 0 1 N N N 13.379 12.600 42.880 -4.634 -2.091 -0.347 O3P QRZ 3 QRZ P P1 P 0 1 N N N 12.223 13.330 42.246 -4.724 -0.731 0.509 P QRZ 4 QRZ O1P O2 O 0 1 N N N 12.553 14.781 41.925 -5.738 0.164 -0.093 O1P QRZ 5 QRZ O2P O3 O 0 1 N N N 10.940 13.200 43.025 -5.145 -1.077 2.024 O2P QRZ 6 QRZ "O5'" O4 O 0 1 N N N 11.853 12.633 40.860 -3.290 0.002 0.504 "O5'" QRZ 7 QRZ "C5'" C3 C 0 1 N N N 12.843 12.370 39.884 -2.690 0.529 -0.681 "C5'" QRZ 8 QRZ "C4'" C4 C 0 1 N N R 12.137 11.842 38.650 -1.338 1.155 -0.332 "C4'" QRZ 9 QRZ "C3'" C5 C 0 1 N N S 11.518 10.471 38.837 -0.726 1.842 -1.574 "C3'" QRZ 10 QRZ "O3'" O5 O 0 1 N N N 10.273 10.362 38.109 -0.980 3.248 -1.544 "O3'" QRZ 11 QRZ "C2'" C6 C 0 1 N N R 12.573 9.525 38.315 0.788 1.559 -1.452 "C2'" QRZ 12 QRZ "O2'" O6 O 0 1 N N N 11.925 8.364 37.830 1.518 2.782 -1.345 "O2'" QRZ 13 QRZ "O4'" O7 O 0 1 N N N 13.059 11.714 37.565 -0.387 0.129 0.028 "O4'" QRZ 14 QRZ "C1'" C7 C 0 1 N N R 13.239 10.338 37.198 0.912 0.735 -0.151 "C1'" QRZ 15 QRZ N1 N1 N 0 1 N N N 14.683 10.091 36.977 1.941 -0.298 -0.298 N1 QRZ 16 QRZ C6 C8 C 0 1 N N N 15.153 9.668 35.717 3.071 -0.256 0.491 C6 QRZ 17 QRZ C5 C9 C 0 1 N N N 16.481 9.315 35.521 4.022 -1.219 0.349 C5 QRZ 18 QRZ C4 C10 C 0 1 N N N 17.350 9.484 36.583 3.822 -2.245 -0.613 C4 QRZ 19 QRZ O4 O8 O 0 1 N N N 18.595 9.287 36.493 4.657 -3.118 -0.760 O4 QRZ 20 QRZ N3 N2 N 0 1 N N N 16.903 9.926 37.781 2.699 -2.246 -1.357 N3 QRZ 21 QRZ O2 O9 O 0 1 N N N 15.265 10.639 39.123 0.770 -1.300 -1.887 O2 QRZ 22 QRZ S4 S1 S 0 1 N N N 13.982 11.166 33.798 2.573 0.671 3.048 S4 QRZ 23 QRZ N5 N3 N 0 1 N N N 13.852 8.599 34.130 3.941 1.934 1.154 N5 QRZ 24 QRZ H1 H1 H 0 1 N N N 14.118 13.190 42.966 -3.987 -2.726 -0.010 H1 QRZ 25 QRZ H2 H2 H 0 1 N N N 10.570 14.062 43.173 -6.000 -1.521 2.103 H2 QRZ 26 QRZ H3 H3 H 0 1 N N N 13.552 11.619 40.261 -2.543 -0.275 -1.402 H3 QRZ 27 QRZ H4 H4 H 0 1 N N N 13.385 13.296 39.640 -3.341 1.289 -1.111 H4 QRZ 28 QRZ H5 H5 H 0 1 N N N 11.340 12.549 38.376 -1.451 1.872 0.481 H5 QRZ 29 QRZ H6 H6 H 0 1 N N N 11.354 10.285 39.909 -1.125 1.402 -2.488 H6 QRZ 30 QRZ H7 H7 H 0 1 N N N 9.640 10.972 38.469 -0.618 3.729 -2.300 H7 QRZ 31 QRZ H8 H8 H 0 1 N N N 13.305 9.290 39.102 1.138 0.979 -2.306 H8 QRZ 32 QRZ H9 H9 H 0 1 N N N 11.529 7.895 38.555 1.426 3.364 -2.112 H9 QRZ 33 QRZ H10 H10 H 0 1 N N N 12.699 10.137 36.261 1.146 1.387 0.690 H10 QRZ 34 QRZ H11 H11 H 0 1 N N N 16.823 8.923 34.574 4.914 -1.203 0.957 H11 QRZ 35 QRZ H12 H12 H 0 1 N N N 17.560 10.042 38.526 2.558 -2.945 -2.015 H12 QRZ 36 QRZ H13 H13 H 0 1 N N N 13.309 8.529 33.293 4.324 2.021 0.267 H13 QRZ 37 QRZ H14 H14 H 0 1 N N N 14.075 7.775 34.651 4.057 2.644 1.804 H14 QRZ 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QRZ S4 C3 DOUB N N 1 QRZ N5 C3 SING N N 2 QRZ C3 C6 SING N N 3 QRZ C5 C6 DOUB N N 4 QRZ C5 C4 SING N N 5 QRZ C6 N1 SING N N 6 QRZ O4 C4 DOUB N N 7 QRZ C4 N3 SING N N 8 QRZ N1 "C1'" SING N N 9 QRZ N1 C2 SING N N 10 QRZ "C1'" "O4'" SING N N 11 QRZ "C1'" "C2'" SING N N 12 QRZ "O4'" "C4'" SING N N 13 QRZ N3 C2 SING N N 14 QRZ "O2'" "C2'" SING N N 15 QRZ C2 O2 DOUB N N 16 QRZ "O3'" "C3'" SING N N 17 QRZ "C2'" "C3'" SING N N 18 QRZ "C4'" "C3'" SING N N 19 QRZ "C4'" "C5'" SING N N 20 QRZ "C5'" "O5'" SING N N 21 QRZ "O5'" P SING N N 22 QRZ O1P P DOUB N N 23 QRZ P O3P SING N N 24 QRZ P O2P SING N N 25 QRZ O3P H1 SING N N 26 QRZ O2P H2 SING N N 27 QRZ "C5'" H3 SING N N 28 QRZ "C5'" H4 SING N N 29 QRZ "C4'" H5 SING N N 30 QRZ "C3'" H6 SING N N 31 QRZ "O3'" H7 SING N N 32 QRZ "C2'" H8 SING N N 33 QRZ "O2'" H9 SING N N 34 QRZ "C1'" H10 SING N N 35 QRZ C5 H11 SING N N 36 QRZ N3 H12 SING N N 37 QRZ N5 H13 SING N N 38 QRZ N5 H14 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QRZ InChI InChI 1.03 "InChI=1S/C10H14N3O9PS/c11-8(24)3-1-5(14)12-10(17)13(3)9-7(16)6(15)4(22-9)2-21-23(18,19)20/h1,4,6-7,9,15-16H,2H2,(H2,11,24)(H,12,14,17)(H2,18,19,20)/t4-,6-,7-,9-/m1/s1" QRZ InChIKey InChI 1.03 FOTDNYQDMJFRSX-FJGDRVTGSA-N QRZ SMILES_CANONICAL CACTVS 3.385 "NC(=S)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" QRZ SMILES CACTVS 3.385 "NC(=S)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" QRZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=S)N" QRZ SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=S)N" # _pdbx_chem_comp_identifier.comp_id QRZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[6-carbamothioyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QRZ "Create component" 2020-07-31 PDBE QRZ "Initial release" 2022-02-23 RCSB ##