data_QSQ # _chem_comp.id QSQ _chem_comp.name "[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-(trifluoromethyloxy)oxolan-2-yl]methyl dihydrogen phosphite" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H13 F3 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-31 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.220 _chem_comp.one_letter_code A _chem_comp.three_letter_code QSQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QSQ "C1'" C1 C 0 1 N N R 14.999 9.383 -6.529 -0.140 -0.097 -0.550 "C1'" QSQ 1 QSQ C2 C2 C 0 1 Y N N 16.259 5.103 -6.975 -4.399 -1.118 -1.533 C2 QSQ 2 QSQ "C2'" C3 C 0 1 N N R 14.745 9.668 -8.012 -0.281 1.240 0.211 "C2'" QSQ 3 QSQ C23 C4 C 0 1 N N N 17.027 10.785 -8.022 -1.753 3.131 0.275 C23 QSQ 4 QSQ "C3'" C5 C 0 1 N N R 13.504 10.552 -7.952 1.168 1.763 0.322 "C3'" QSQ 5 QSQ C4 C6 C 0 1 Y N N 14.896 6.881 -6.352 -2.380 -1.271 -0.445 C4 QSQ 6 QSQ "C4'" C7 C 0 1 N N R 13.698 11.336 -6.661 2.014 0.680 -0.385 "C4'" QSQ 7 QSQ C5 C8 C 0 1 Y N N 13.986 5.974 -5.843 -2.894 -2.318 0.338 C5 QSQ 8 QSQ "C5'" C9 C 0 1 N N N 12.435 11.820 -5.992 3.347 0.488 0.340 "C5'" QSQ 9 QSQ C6 C10 C 0 1 Y N N 14.269 4.601 -5.926 -4.221 -2.723 0.116 C6 QSQ 10 QSQ C8 C11 C 0 1 Y N N 13.207 7.969 -5.533 -0.845 -1.987 0.966 C8 QSQ 11 QSQ F24 F1 F 0 1 N N N 16.792 11.750 -7.084 -2.593 2.486 1.188 F24 QSQ 12 QSQ F25 F2 F 0 1 N N N 17.767 11.346 -9.023 -2.512 3.973 -0.544 F25 QSQ 13 QSQ F26 F3 F 0 1 N N N 17.754 9.752 -7.499 -0.802 3.887 0.969 F26 QSQ 14 QSQ N1 N1 N 0 1 Y N N 15.402 4.216 -6.493 -4.925 -2.098 -0.822 N1 QSQ 15 QSQ N3 N2 N 0 1 Y N N 16.020 6.401 -6.909 -3.161 -0.705 -1.360 N3 QSQ 16 QSQ N6 N3 N 0 1 N N N 13.336 3.620 -5.401 -4.782 -3.749 0.856 N6 QSQ 17 QSQ N7 N4 N 0 1 Y N N 12.959 6.681 -5.345 -1.906 -2.710 1.178 N7 QSQ 18 QSQ N9 N5 N 0 1 Y N N 14.380 8.104 -6.132 -1.087 -1.085 -0.026 N9 QSQ 19 QSQ "O2'" O1 O 0 1 N N N 15.837 10.354 -8.629 -1.088 2.156 -0.532 "O2'" QSQ 20 QSQ "O3'" O2 O 0 1 N N N 13.361 11.394 -9.083 1.301 3.018 -0.348 "O3'" QSQ 21 QSQ "O4'" O3 O 0 1 N N N 14.397 10.417 -5.780 1.218 -0.522 -0.302 "O4'" QSQ 22 QSQ "O5'" O4 O 0 1 N N N 11.477 10.777 -5.870 4.160 -0.430 -0.393 "O5'" QSQ 23 QSQ OP1 O5 O 0 1 N N N 9.429 12.229 -5.647 5.325 -2.152 1.000 OP1 QSQ 24 QSQ OP2 O6 O 0 1 N N N 9.371 9.684 -5.047 6.229 -1.545 -1.253 OP2 QSQ 25 QSQ P P1 P 0 1 N N N 10.110 11.004 -5.079 5.636 -0.867 0.081 P QSQ 26 QSQ H1 H1 H 0 1 N N N 16.083 9.347 -6.348 -0.301 0.053 -1.618 H1 QSQ 27 QSQ H2 H2 H 0 1 N N N 17.174 4.758 -7.433 -5.005 -0.640 -2.288 H2 QSQ 28 QSQ H3 H3 H 0 1 N N N 14.513 8.730 -8.538 -0.704 1.072 1.201 H3 QSQ 29 QSQ H4 H4 H 0 1 N N N 12.618 9.909 -7.844 1.462 1.855 1.368 H4 QSQ 30 QSQ H5 H5 H 0 1 N N N 14.341 12.203 -6.871 2.185 0.953 -1.426 H5 QSQ 31 QSQ H6 H6 H 0 1 N N N 12.684 12.196 -4.989 3.861 1.446 0.418 H6 QSQ 32 QSQ H7 H7 H 0 1 N N N 12.002 12.634 -6.592 3.164 0.093 1.339 H7 QSQ 33 QSQ H8 H8 H 0 1 N N N 12.555 8.780 -5.243 0.090 -2.088 1.498 H8 QSQ 34 QSQ H9 H9 H 0 1 N N N 13.701 2.701 -5.548 -4.257 -4.198 1.538 H9 QSQ 35 QSQ H10 H10 H 0 1 N N N 13.206 3.774 -4.422 -5.699 -4.020 0.694 H10 QSQ 36 QSQ H11 H11 H 0 1 N N N 12.574 11.919 -8.990 2.191 3.393 -0.310 H11 QSQ 37 QSQ H12 H12 H 0 1 N N N 8.612 12.379 -5.187 6.113 -2.561 1.383 H12 QSQ 38 QSQ H13 H13 H 0 1 N N N 8.551 9.791 -4.580 7.132 -1.877 -1.158 H13 QSQ 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QSQ "O3'" "C3'" SING N N 1 QSQ F25 C23 SING N N 2 QSQ "O2'" C23 SING N N 3 QSQ "O2'" "C2'" SING N N 4 QSQ C23 F26 SING N N 5 QSQ C23 F24 SING N N 6 QSQ "C2'" "C3'" SING N N 7 QSQ "C2'" "C1'" SING N N 8 QSQ "C3'" "C4'" SING N N 9 QSQ C2 N3 DOUB Y N 10 QSQ C2 N1 SING Y N 11 QSQ N3 C4 SING Y N 12 QSQ "C4'" "C5'" SING N N 13 QSQ "C4'" "O4'" SING N N 14 QSQ "C1'" N9 SING N N 15 QSQ "C1'" "O4'" SING N N 16 QSQ N1 C6 DOUB Y N 17 QSQ C4 N9 SING Y N 18 QSQ C4 C5 DOUB Y N 19 QSQ N9 C8 SING Y N 20 QSQ "C5'" "O5'" SING N N 21 QSQ C6 C5 SING Y N 22 QSQ C6 N6 SING N N 23 QSQ "O5'" P SING N N 24 QSQ C5 N7 SING Y N 25 QSQ OP1 P SING N N 26 QSQ C8 N7 DOUB Y N 27 QSQ P OP2 SING N N 28 QSQ "C1'" H1 SING N N 29 QSQ C2 H2 SING N N 30 QSQ "C2'" H3 SING N N 31 QSQ "C3'" H4 SING N N 32 QSQ "C4'" H5 SING N N 33 QSQ "C5'" H6 SING N N 34 QSQ "C5'" H7 SING N N 35 QSQ C8 H8 SING N N 36 QSQ N6 H9 SING N N 37 QSQ N6 H10 SING N N 38 QSQ "O3'" H11 SING N N 39 QSQ OP1 H12 SING N N 40 QSQ OP2 H13 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QSQ InChI InChI 1.03 "InChI=1S/C11H13F3N5O6P/c12-11(13,14)25-7-6(20)4(1-23-26(21)22)24-10(7)19-3-18-5-8(15)16-2-17-9(5)19/h2-4,6-7,10,20-22H,1H2,(H2,15,16,17)/t4-,6-,7-,10-/m1/s1" QSQ InChIKey InChI 1.03 QTJSXSSMPAZFOY-KQYNXXCUSA-N QSQ SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COP(O)O)[C@@H](O)[C@H]3OC(F)(F)F" QSQ SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](COP(O)O)[CH](O)[CH]3OC(F)(F)F" QSQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(O)O)O)OC(F)(F)F)N" QSQ SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(O)O)O)OC(F)(F)F)N" # _pdbx_chem_comp_identifier.comp_id QSQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-(trifluoromethyloxy)oxolan-2-yl]methyl dihydrogen phosphite" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QSQ "Create component" 2020-07-31 PDBE QSQ "Initial release" 2020-12-16 RCSB ##