data_QUG # _chem_comp.id QUG _chem_comp.name "2-amino-5-({[(1S,4S,5S)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Queuine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-06 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 277.279 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QUG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6P78 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QUG N N1 N 0 1 N N N 3.354 43.776 74.638 -3.166 -1.712 0.019 N QUG 1 QUG C C1 C 0 1 N N N 2.144 44.094 75.149 -4.200 -0.998 -0.370 C QUG 2 QUG O O1 O 0 1 N N N 6.475 40.855 71.094 3.070 0.373 -1.999 O QUG 3 QUG C1 C2 C 0 1 N N N 3.657 42.542 74.208 -2.012 -1.128 0.380 C1 QUG 4 QUG C10 C3 C 0 1 N N N 6.013 37.494 70.380 3.959 -1.620 0.314 C10 QUG 5 QUG C11 C4 C 0 1 N N N 3.522 39.155 73.490 0.508 1.030 1.123 C11 QUG 6 QUG C2 C5 C 0 1 Y N N 2.609 41.509 74.359 -1.926 0.333 0.333 C2 QUG 7 QUG C3 C6 C 0 1 Y N N 1.309 41.908 74.928 -3.041 1.054 -0.085 C3 QUG 8 QUG C4 C7 C 0 1 Y N N 1.189 39.739 74.465 -1.423 2.524 0.388 C4 QUG 9 QUG C5 C8 C 0 1 Y N N 2.480 40.079 74.075 -0.888 1.315 0.633 C5 QUG 10 QUG C6 C9 C 0 1 N N S 7.045 38.600 70.366 4.734 -0.590 -0.474 C6 QUG 11 QUG C7 C10 C 0 1 N N S 6.671 39.507 71.532 3.719 0.547 -0.738 C7 QUG 12 QUG C8 C11 C 0 1 N N S 5.455 38.871 72.215 2.726 0.347 0.430 C8 QUG 13 QUG C9 C12 C 0 1 N N N 5.146 37.637 71.385 2.864 -1.109 0.807 C9 QUG 14 QUG N1 N2 N 0 1 N N N 1.123 43.200 75.301 -4.174 0.358 -0.434 N1 QUG 15 QUG N2 N3 N 0 1 Y N N 0.528 40.819 74.952 -2.716 2.370 -0.044 N2 QUG 16 QUG N3 N4 N 0 1 N N N 4.278 39.763 72.378 1.354 0.634 -0.011 N3 QUG 17 QUG N4 N5 N 0 1 N N N 1.933 45.384 75.527 -5.350 -1.649 -0.727 N4 QUG 18 QUG O1 O2 O 0 1 N N N 8.354 38.105 70.658 5.838 -0.104 0.292 O1 QUG 19 QUG O2 O3 O 0 1 N N N 4.782 42.280 73.742 -1.058 -1.798 0.741 O2 QUG 20 QUG H1 H1 H 0 1 N N N 6.243 41.399 71.837 3.671 0.390 -2.756 H1 QUG 21 QUG H2 H2 H 0 1 N N N 5.981 36.686 69.664 4.269 -2.646 0.448 H2 QUG 22 QUG H3 H3 H 0 1 N N N 3.018 38.251 73.117 0.920 1.926 1.588 H3 QUG 23 QUG H4 H4 H 0 1 N N N 4.230 38.879 74.285 0.479 0.222 1.855 H4 QUG 24 QUG H5 H5 H 0 1 N N N 0.769 38.747 74.390 -0.915 3.468 0.511 H5 QUG 25 QUG H6 H6 H 0 1 N N N 7.013 39.154 69.416 5.083 -1.015 -1.415 H6 QUG 26 QUG H7 H7 H 0 1 N N N 7.503 39.485 72.251 4.201 1.523 -0.679 H7 QUG 27 QUG H8 H8 H 0 1 N N N 5.772 38.534 73.213 2.994 0.987 1.271 H8 QUG 28 QUG H9 H9 H 0 1 N N N 4.328 36.960 71.583 2.149 -1.657 1.403 H9 QUG 29 QUG H10 H10 H 0 1 N N N 0.247 43.494 75.683 -4.963 0.841 -0.728 H10 QUG 30 QUG H11 H11 H 0 1 N N N -0.415 40.805 75.284 -3.311 3.097 -0.285 H11 QUG 31 QUG H12 H12 H 0 1 N N N 4.565 40.692 72.610 1.345 1.339 -0.732 H12 QUG 32 QUG H14 H14 H 0 1 N N N 2.661 46.061 75.423 -5.391 -2.618 -0.690 H14 QUG 33 QUG H15 H15 H 0 1 N N N 1.050 45.655 75.909 -6.124 -1.142 -1.017 H15 QUG 34 QUG H16 H16 H 0 1 N N N 8.976 38.823 70.641 6.482 -0.785 0.530 H16 QUG 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QUG C6 C10 SING N N 1 QUG C6 O1 SING N N 2 QUG C6 C7 SING N N 3 QUG C10 C9 DOUB N N 4 QUG O C7 SING N N 5 QUG C9 C8 SING N N 6 QUG C7 C8 SING N N 7 QUG C8 N3 SING N N 8 QUG N3 C11 SING N N 9 QUG C11 C5 SING N N 10 QUG O2 C1 DOUB N N 11 QUG C5 C2 SING Y N 12 QUG C5 C4 DOUB Y N 13 QUG C1 C2 SING N N 14 QUG C1 N SING N N 15 QUG C2 C3 DOUB Y N 16 QUG C4 N2 SING Y N 17 QUG N C DOUB N N 18 QUG C3 N2 SING Y N 19 QUG C3 N1 SING N N 20 QUG C N1 SING N N 21 QUG C N4 SING N N 22 QUG O H1 SING N N 23 QUG C10 H2 SING N N 24 QUG C11 H3 SING N N 25 QUG C11 H4 SING N N 26 QUG C4 H5 SING N N 27 QUG C6 H6 SING N N 28 QUG C7 H7 SING N N 29 QUG C8 H8 SING N N 30 QUG C9 H9 SING N N 31 QUG N1 H10 SING N N 32 QUG N2 H11 SING N N 33 QUG N3 H12 SING N N 34 QUG N4 H14 SING N N 35 QUG N4 H15 SING N N 36 QUG O1 H16 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QUG SMILES ACDLabs 12.01 "N1=C(Nc3c(C1=O)c(CNC2C(O)C(C=C2)O)cn3)N" QUG InChI InChI 1.03 "InChI=1S/C12H15N5O3/c13-12-16-10-8(11(20)17-12)5(4-15-10)3-14-6-1-2-7(18)9(6)19/h1-2,4,6-7,9,14,18-19H,3H2,(H4,13,15,16,17,20)/t6-,7-,9-/m0/s1" QUG InChIKey InChI 1.03 WYROLENTHWJFLR-ZKWXMUAHSA-N QUG SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2c(CN[C@H]3C=C[C@H](O)[C@H]3O)c[nH]c2N1" QUG SMILES CACTVS 3.385 "NC1=NC(=O)c2c(CN[CH]3C=C[CH](O)[CH]3O)c[nH]c2N1" QUG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)NC(=NC2=O)N)CN[C@H]3C=C[C@@H]([C@H]3O)O" QUG SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)NC(=NC2=O)N)CNC3C=CC(C3O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QUG "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-5-({[(1S,4S,5S)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" QUG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-5-[[[(1~{S},4~{S},5~{S})-4,5-bis(oxidanyl)cyclopent-2-en-1-yl]amino]methyl]-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QUG "Create component" 2019-06-06 RCSB QUG "Initial release" 2019-09-18 RCSB QUG "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QUG _pdbx_chem_comp_synonyms.name Queuine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##