data_QVV # _chem_comp.id QVV _chem_comp.name "benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N9 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SJ000988248 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-02 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.502 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QVV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VBR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QVV C17 C1 C 0 1 N N N 14.576 37.065 -15.023 3.014 1.774 2.512 C17 QVV 1 QVV C16 C2 C 0 1 N N N 12.631 37.417 -16.574 1.597 -0.169 1.834 C16 QVV 2 QVV C15 C3 C 0 1 N N N 13.574 38.076 -15.572 2.451 0.993 1.323 C15 QVV 3 QVV C22 C4 C 0 1 Y N N 12.860 41.223 -11.782 -6.681 -2.795 -1.894 C22 QVV 4 QVV C19 C5 C 0 1 Y N N 11.907 42.986 -12.725 -6.218 -1.526 -0.035 C19 QVV 5 QVV C20 C6 C 0 1 Y N N 10.642 42.569 -12.229 -7.580 -1.554 0.310 C20 QVV 6 QVV C21 C7 C 0 1 Y N N 10.606 41.425 -11.500 -8.462 -2.256 -0.528 C21 QVV 7 QVV C01 C8 C 0 1 N N N 15.926 39.718 -18.023 1.462 3.785 -0.920 C01 QVV 8 QVV C02 C9 C 0 1 N N N 15.835 41.117 -17.595 0.021 3.527 -1.033 C02 QVV 9 QVV C03 C10 C 0 1 N N N 14.997 41.457 -16.512 -0.496 2.440 -0.348 C03 QVV 10 QVV C04 C11 C 0 1 N N N 14.867 42.897 -16.034 -1.941 2.128 -0.423 C04 QVV 11 QVV C05 C12 C 0 1 N N N 13.896 44.561 -14.484 -3.867 0.760 0.172 C05 QVV 12 QVV C06 C13 C 0 1 N N N 12.486 45.021 -14.121 -4.166 -0.482 1.015 C06 QVV 13 QVV C07 C14 C 0 1 N N N 14.366 39.157 -16.286 1.602 1.908 0.479 C07 QVV 14 QVV C18 C15 C 0 1 Y N N 10.307 44.429 -13.349 -6.552 -0.399 1.830 C18 QVV 15 QVV N01 N1 N 0 1 N N N 15.200 38.771 -17.369 2.197 2.947 -0.156 N01 QVV 16 QVV N02 N2 N 0 1 N N N 13.988 43.190 -14.934 -2.437 1.068 0.246 N02 QVV 17 QVV N03 N3 N 0 1 N N N 14.255 40.461 -15.857 0.327 1.669 0.386 N03 QVV 18 QVV N04 N4 N 0 1 N N N 12.823 38.657 -14.473 3.556 0.469 0.516 N04 QVV 19 QVV N05 N5 N 0 1 Y N N 11.604 44.119 -13.393 -5.596 -0.790 0.942 N05 QVV 20 QVV N06 N6 N 0 1 Y N N 9.610 43.518 -12.643 -7.716 -0.848 1.458 N06 QVV 21 QVV N07 N7 N 0 1 Y N N 13.047 42.340 -12.518 -5.818 -2.154 -1.136 N07 QVV 22 QVV N08 N8 N 0 1 N N N 9.340 40.947 -10.968 -9.814 -2.319 -0.240 N08 QVV 23 QVV N09 N9 N 0 1 Y N N 11.708 40.747 -11.270 -7.970 -2.850 -1.611 N09 QVV 24 QVV O01 O1 O 0 1 N N N 16.755 39.344 -19.081 1.980 4.722 -1.502 O01 QVV 25 QVV O02 O2 O 0 1 N N N 16.574 42.102 -18.256 -0.778 4.327 -1.783 O02 QVV 26 QVV O03 O3 O 0 1 N N N 15.461 43.779 -16.548 -2.680 2.827 -1.087 O03 QVV 27 QVV H1 H1 H 0 1 N N N 15.244 37.563 -14.304 3.628 1.112 3.123 H1 QVV 28 QVV H2 H2 H 0 1 N N N 14.036 36.251 -14.518 3.623 2.602 2.148 H2 QVV 29 QVV H3 H3 H 0 1 N N N 15.171 36.652 -15.851 2.192 2.164 3.113 H3 QVV 30 QVV H4 H4 H 0 1 N N N 12.050 36.631 -16.069 0.775 0.222 2.434 H4 QVV 31 QVV H5 H5 H 0 1 N N N 11.945 38.173 -16.984 1.196 -0.725 0.987 H5 QVV 32 QVV H6 H6 H 0 1 N N N 13.217 36.972 -17.391 2.211 -0.830 2.445 H6 QVV 33 QVV H7 H7 H 0 1 N N N 13.745 40.638 -11.578 -6.323 -3.291 -2.784 H7 QVV 34 QVV H8 H8 H 0 1 N N N 14.532 44.673 -13.594 -4.145 0.570 -0.864 H8 QVV 35 QVV H9 H9 H 0 1 N N N 14.272 45.211 -15.288 -4.442 1.604 0.554 H9 QVV 36 QVV H10 H10 H 0 1 N N N 12.593 45.928 -13.508 -3.592 -1.326 0.634 H10 QVV 37 QVV H11 H11 H 0 1 N N N 11.979 45.273 -15.064 -3.888 -0.292 2.052 H11 QVV 38 QVV H12 H12 H 0 1 N N N 9.872 45.299 -13.819 -6.372 0.196 2.714 H12 QVV 39 QVV H13 H13 H 0 1 N N N 15.253 37.812 -17.648 3.151 3.090 -0.061 H13 QVV 40 QVV H14 H14 H 0 1 N N N 13.456 42.467 -14.493 -1.847 0.510 0.777 H14 QVV 41 QVV H15 H15 H 0 1 N N N 12.663 39.596 -14.167 3.643 0.730 -0.414 H15 QVV 42 QVV H18 H18 H 0 1 N N N 9.491 40.100 -10.459 -10.163 -1.875 0.549 H18 QVV 43 QVV H19 H19 H 0 1 N N N 8.953 41.638 -10.358 -10.413 -2.807 -0.826 H19 QVV 44 QVV H20 H20 H 0 1 N N N 16.401 42.948 -17.859 -0.311 5.055 -2.216 H20 QVV 45 QVV C1 C16 C 0 1 N N N ? ? ? 4.450 -0.376 1.066 C1 QVV 46 QVV O1 O4 O 0 1 N N N ? ? ? 5.465 -0.858 0.324 O1 QVV 47 QVV C3 C17 C 0 1 N N N ? ? ? 6.391 -1.763 0.983 C3 QVV 48 QVV C4 C18 C 0 1 Y N N ? ? ? 7.452 -2.195 0.004 C4 QVV 49 QVV O2 O5 O 0 1 N N N ? ? ? 4.340 -0.703 2.231 O2 QVV 50 QVV C2 C19 C 0 1 Y N N ? ? ? 8.618 -1.463 -0.120 C2 QVV 51 QVV C5 C20 C 0 1 Y N N ? ? ? 9.591 -1.859 -1.018 C5 QVV 52 QVV C6 C21 C 0 1 Y N N ? ? ? 9.399 -2.989 -1.792 C6 QVV 53 QVV C7 C22 C 0 1 Y N N ? ? ? 8.233 -3.721 -1.667 C7 QVV 54 QVV C8 C23 C 0 1 Y N N ? ? ? 7.262 -3.327 -0.766 C8 QVV 55 QVV H16 H16 H 0 1 N N N ? ? ? 6.859 -1.254 1.825 H16 QVV 56 QVV H17 H17 H 0 1 N N N ? ? ? 5.849 -2.638 1.342 H17 QVV 57 QVV H21 H21 H 0 1 N N N ? ? ? 8.768 -0.580 0.484 H21 QVV 58 QVV H22 H22 H 0 1 N N N ? ? ? 10.502 -1.287 -1.115 H22 QVV 59 QVV H23 H23 H 0 1 N N N ? ? ? 10.159 -3.298 -2.494 H23 QVV 60 QVV H24 H24 H 0 1 N N N ? ? ? 8.083 -4.604 -2.272 H24 QVV 61 QVV H25 H25 H 0 1 N N N ? ? ? 6.351 -3.900 -0.669 H25 QVV 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QVV O01 C01 DOUB N N 1 QVV O02 C02 SING N N 2 QVV C01 C02 SING N N 3 QVV C01 N01 SING N N 4 QVV C02 C03 DOUB N N 5 QVV N01 C07 SING N N 6 QVV C16 C15 SING N N 7 QVV O03 C04 DOUB N N 8 QVV C03 C04 SING N N 9 QVV C03 N03 SING N N 10 QVV C07 N03 DOUB N N 11 QVV C07 C15 SING N N 12 QVV C04 N02 SING N N 13 QVV C15 C17 SING N N 14 QVV C15 N04 SING N N 15 QVV N02 C05 SING N N 16 QVV C05 C06 SING N N 17 QVV C06 N05 SING N N 18 QVV N05 C18 SING Y N 19 QVV N05 C19 SING Y N 20 QVV C18 N06 DOUB Y N 21 QVV C19 N07 DOUB Y N 22 QVV C19 C20 SING Y N 23 QVV N06 C20 SING Y N 24 QVV N07 C22 SING Y N 25 QVV C20 C21 DOUB Y N 26 QVV C22 N09 DOUB Y N 27 QVV C21 N09 SING Y N 28 QVV C21 N08 SING N N 29 QVV C17 H1 SING N N 30 QVV C17 H2 SING N N 31 QVV C17 H3 SING N N 32 QVV C16 H4 SING N N 33 QVV C16 H5 SING N N 34 QVV C16 H6 SING N N 35 QVV C22 H7 SING N N 36 QVV C05 H8 SING N N 37 QVV C05 H9 SING N N 38 QVV C06 H10 SING N N 39 QVV C06 H11 SING N N 40 QVV C18 H12 SING N N 41 QVV N01 H13 SING N N 42 QVV N02 H14 SING N N 43 QVV N04 H15 SING N N 44 QVV N08 H18 SING N N 45 QVV N08 H19 SING N N 46 QVV O02 H20 SING N N 47 QVV N04 C1 SING N N 48 QVV C1 O1 SING N N 49 QVV O1 C3 SING N N 50 QVV C3 C4 SING N N 51 QVV C1 O2 DOUB N N 52 QVV C4 C2 SING Y N 53 QVV C2 C5 DOUB Y N 54 QVV C5 C6 SING Y N 55 QVV C6 C7 DOUB Y N 56 QVV C7 C8 SING Y N 57 QVV C8 C4 DOUB Y N 58 QVV C3 H16 SING N N 59 QVV C3 H17 SING N N 60 QVV C2 H21 SING N N 61 QVV C5 H22 SING N N 62 QVV C6 H23 SING N N 63 QVV C7 H24 SING N N 64 QVV C8 H25 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QVV SMILES ACDLabs 12.01 "CC(C)(NC(OCc1ccccc1)=O)C2=NC(=C(C(N2)=O)O)C(NCCn4c3ncnc(c3nc4)N)=O" QVV InChI InChI 1.03 "InChI=1S/C23H25N9O5/c1-23(2,31-22(36)37-10-13-6-4-3-5-7-13)21-29-14(16(33)20(35)30-21)19(34)25-8-9-32-12-28-15-17(24)26-11-27-18(15)32/h3-7,11-12,33H,8-10H2,1-2H3,(H,25,34)(H,31,36)(H2,24,26,27)(H,29,30,35)" QVV InChIKey InChI 1.03 MEMCKKGWXCKHJK-UHFFFAOYSA-N QVV SMILES_CANONICAL CACTVS 3.385 "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCn3cnc4c(N)ncnc34" QVV SMILES CACTVS 3.385 "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCn3cnc4c(N)ncnc34" QVV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCn2cnc3c2ncnc3N)NC(=O)OCc4ccccc4" QVV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCn2cnc3c2ncnc3N)NC(=O)OCc4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QVV "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate" QVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[2-[4-[2-(6-aminopurin-9-yl)ethylcarbamoyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QVV "Create component" 2020-01-02 RCSB QVV "Initial release" 2021-02-10 RCSB QVV "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QVV _pdbx_chem_comp_synonyms.name SJ000988248 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##