data_QZD # _chem_comp.id QZD _chem_comp.name "N~2~-{[(5-ethyl-1,3-dioxan-5-yl)oxy]carbonyl}-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H35 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QZD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VH0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QZD C12 C1 C 0 1 N N N N N N -16.609 -7.937 -9.656 4.638 0.827 -0.854 C12 QZD 1 QZD C14 C2 C 0 1 N N N N N N -18.359 -9.703 -9.320 3.003 1.847 0.738 C14 QZD 2 QZD N15 N1 N 0 1 N N N N N N -19.020 -10.485 -10.247 3.517 2.066 1.961 N15 QZD 3 QZD C16 C3 C 0 1 N N N N N N -18.148 -10.830 -11.352 4.915 2.506 1.880 C16 QZD 4 QZD C02 C4 C 0 1 N N N N N N -13.658 -12.138 -8.484 -2.209 -0.323 -0.046 C02 QZD 5 QZD C04 C5 C 0 1 N N S N N N -12.411 -10.014 -8.548 0.154 -0.909 -0.146 C04 QZD 6 QZD C05 C6 C 0 1 N N N N N N -10.947 -9.400 -8.622 0.254 -2.372 0.291 C05 QZD 7 QZD C06 C7 C 0 1 N N N N N N -9.970 -9.904 -7.502 1.548 -2.581 1.081 C06 QZD 8 QZD C07 C8 C 0 1 N N N N N N -8.521 -9.407 -7.664 1.471 -1.810 2.400 C07 QZD 9 QZD C08 C9 C 0 1 N N N N N N -10.481 -9.522 -6.119 1.732 -4.072 1.372 C08 QZD 10 QZD C09 C10 C 0 1 N N N N N N -13.366 -9.293 -9.566 1.261 -0.600 -1.121 C09 QZD 11 QZD C11 C11 C 0 1 N N S N N N -15.165 -7.640 -10.103 3.560 0.044 -1.606 C11 QZD 12 QZD C13 C12 C 0 1 N N S N N N -16.944 -9.438 -9.737 4.043 2.132 -0.323 C13 QZD 13 QZD C17 C13 C 0 1 N N N N N N -16.928 -9.933 -11.153 5.120 2.961 0.418 C17 QZD 14 QZD C19 C14 C 0 1 N N N N N N -14.856 -6.115 -10.128 4.184 -1.200 -2.243 C19 QZD 15 QZD C23 C15 C 0 1 N N N N N N -14.012 -14.524 -9.163 -4.544 0.066 0.258 C23 QZD 16 QZD C24 C16 C 0 1 N N N N N N -13.344 -15.918 -8.930 -4.642 -1.028 1.323 C24 QZD 17 QZD C25 C17 C 0 1 N N N N N N -13.201 -16.313 -7.459 -4.842 -2.384 0.644 C25 QZD 18 QZD C26 C18 C 0 1 N N N N N N -15.520 -14.752 -8.997 -4.344 1.426 0.935 C26 QZD 19 QZD C28 C19 C 0 1 N N N N N N -15.689 -15.347 -11.271 -5.603 2.477 -0.812 C28 QZD 20 QZD C30 C20 C 0 1 N N N N N N -13.898 -14.003 -10.592 -5.841 0.106 -0.559 C30 QZD 21 QZD N03 N2 N 0 1 N N N N N N -12.523 -11.422 -8.857 -1.142 -0.679 -0.789 N03 QZD 22 QZD N10 N3 N 0 1 N N N N N N -14.243 -8.340 -9.187 2.509 -0.362 -0.670 N10 QZD 23 QZD O01 O1 O 0 1 N N N N N N -14.713 -11.559 -8.191 -2.077 -0.104 1.141 O01 QZD 24 QZD O18 O2 O 0 1 N N N N N N -18.918 -9.319 -8.297 1.871 1.470 0.517 O18 QZD 25 QZD O20 O3 O 0 1 N N N N N N -15.868 -5.555 -10.943 4.849 -1.967 -1.237 O20 QZD 26 QZD O21 O4 O 0 1 N N N N N N -13.349 -9.608 -10.764 1.028 -0.564 -2.310 O21 QZD 27 QZD O22 O5 O 0 1 N N N N N N -13.547 -13.486 -8.283 -3.421 -0.209 -0.621 O22 QZD 28 QZD O27 O6 O 0 1 N N N N N N -15.886 -15.760 -9.942 -4.387 2.452 -0.061 O27 QZD 29 QZD O29 O7 O 0 1 N N N N N N -14.346 -14.992 -11.483 -5.788 1.216 -1.460 O29 QZD 30 QZD H1 H1 H 0 1 N N N N N N -16.734 -7.601 -8.616 5.006 0.229 -0.020 H1 QZD 31 QZD H2 H2 H 0 1 N N N N N N -17.302 -7.383 -10.306 5.463 1.052 -1.530 H2 QZD 32 QZD H3 H3 H 0 1 N N N N N N -19.974 -10.775 -10.166 3.026 1.950 2.789 H3 QZD 33 QZD H4 H4 H 0 1 N N N N N N -18.635 -10.619 -12.315 5.085 3.339 2.562 H4 QZD 34 QZD H5 H5 H 0 1 N N N N N N -17.864 -11.892 -11.309 5.587 1.680 2.116 H5 QZD 35 QZD H6 H6 H 0 1 N N N N N N -12.798 -9.830 -7.535 0.247 -0.262 0.726 H6 QZD 36 QZD H7 H7 H 0 1 N N N N N N -10.514 -9.662 -9.599 -0.600 -2.622 0.921 H7 QZD 37 QZD H8 H8 H 0 1 N N N N N N -11.029 -8.306 -8.539 0.257 -3.015 -0.589 H8 QZD 38 QZD H9 H9 H 0 1 N N N N N N -9.951 -11.002 -7.559 2.393 -2.218 0.496 H9 QZD 39 QZD H10 H10 H 0 1 N N N N N N -7.903 -9.802 -6.844 2.420 -1.898 2.928 H10 QZD 40 QZD H11 H11 H 0 1 N N N N N N -8.119 -9.756 -8.627 1.265 -0.759 2.195 H11 QZD 41 QZD H12 H12 H 0 1 N N N N N N -8.506 -8.307 -7.638 0.672 -2.223 3.016 H12 QZD 42 QZD H13 H13 H 0 1 N N N N N N -9.779 -9.887 -5.355 1.786 -4.622 0.432 H13 QZD 43 QZD H14 H14 H 0 1 N N N N N N -10.564 -8.427 -6.048 2.654 -4.221 1.934 H14 QZD 44 QZD H15 H15 H 0 1 N N N N N N -11.469 -9.976 -5.955 0.887 -4.435 1.956 H15 QZD 45 QZD H16 H16 H 0 1 N N N N N N -15.030 -8.034 -11.121 3.130 0.674 -2.385 H16 QZD 46 QZD H17 H17 H 0 1 N N N N N N -16.242 -10.015 -9.117 3.608 2.711 -1.137 H17 QZD 47 QZD H18 H18 H 0 1 N N N N N N -16.008 -10.507 -11.338 4.936 4.030 0.313 H18 QZD 48 QZD H19 H19 H 0 1 N N N N N N -16.974 -9.081 -11.847 6.119 2.702 0.066 H19 QZD 49 QZD H20 H20 H 0 1 N N N N N N -13.862 -5.928 -10.561 3.402 -1.804 -2.703 H20 QZD 50 QZD H21 H21 H 0 1 N N N N N N -14.899 -5.694 -9.113 4.904 -0.896 -3.003 H21 QZD 51 QZD H22 H22 H 0 1 N N N N N N -13.956 -16.681 -9.433 -3.724 -1.047 1.910 H22 QZD 52 QZD H23 H23 H 0 1 N N N N N N -12.340 -15.898 -9.380 -5.488 -0.822 1.978 H23 QZD 53 QZD H24 H24 H 0 1 N N N N N N -12.724 -17.302 -7.389 -4.912 -3.164 1.402 H24 QZD 54 QZD H25 H25 H 0 1 N N N N N N -12.580 -15.569 -6.938 -5.760 -2.365 0.057 H25 QZD 55 QZD H26 H26 H 0 1 N N N N N N -14.196 -16.352 -6.992 -3.996 -2.591 -0.012 H26 QZD 56 QZD H27 H27 H 0 1 N N N N N N -16.070 -13.822 -9.202 -5.138 1.591 1.664 H27 QZD 57 QZD H28 H28 H 0 1 N N N N N N -15.742 -15.091 -7.975 -3.377 1.444 1.439 H28 QZD 58 QZD H29 H29 H 0 1 N N N N N N -16.330 -14.478 -11.479 -6.441 2.666 -0.140 H29 QZD 59 QZD H30 H30 H 0 1 N N N N N N -15.957 -16.170 -11.949 -5.552 3.266 -1.561 H30 QZD 60 QZD H31 H31 H 0 1 N N N N N N -12.848 -13.759 -10.812 -5.944 -0.820 -1.125 H31 QZD 61 QZD H32 H32 H 0 1 N N N N N N -14.516 -13.100 -10.704 -6.691 0.219 0.113 H32 QZD 62 QZD H33 H33 H 0 1 N N N N N N -11.781 -11.885 -9.342 -1.232 -0.782 -1.749 H33 QZD 63 QZD H34 H34 H 0 1 N N N N N N -14.270 -8.091 -8.219 2.711 -0.460 0.273 H34 QZD 64 QZD H35 H35 H 0 1 N N N N N N -15.742 -4.615 -11.004 5.268 -2.773 -1.570 H35 QZD 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QZD O29 C28 SING N N 1 QZD O29 C30 SING N N 2 QZD C16 C17 SING N N 3 QZD C16 N15 SING N N 4 QZD C28 O27 SING N N 5 QZD C17 C13 SING N N 6 QZD O20 C19 SING N N 7 QZD O21 C09 DOUB N N 8 QZD C30 C23 SING N N 9 QZD N15 C14 SING N N 10 QZD C19 C11 SING N N 11 QZD C11 C12 SING N N 12 QZD C11 N10 SING N N 13 QZD O27 C26 SING N N 14 QZD C13 C12 SING N N 15 QZD C13 C14 SING N N 16 QZD C09 N10 SING N N 17 QZD C09 C04 SING N N 18 QZD C14 O18 DOUB N N 19 QZD C23 C26 SING N N 20 QZD C23 C24 SING N N 21 QZD C23 O22 SING N N 22 QZD C24 C25 SING N N 23 QZD N03 C04 SING N N 24 QZD N03 C02 SING N N 25 QZD C05 C04 SING N N 26 QZD C05 C06 SING N N 27 QZD C02 O22 SING N N 28 QZD C02 O01 DOUB N N 29 QZD C07 C06 SING N N 30 QZD C06 C08 SING N N 31 QZD C12 H1 SING N N 32 QZD C12 H2 SING N N 33 QZD N15 H3 SING N N 34 QZD C16 H4 SING N N 35 QZD C16 H5 SING N N 36 QZD C04 H6 SING N N 37 QZD C05 H7 SING N N 38 QZD C05 H8 SING N N 39 QZD C06 H9 SING N N 40 QZD C07 H10 SING N N 41 QZD C07 H11 SING N N 42 QZD C07 H12 SING N N 43 QZD C08 H13 SING N N 44 QZD C08 H14 SING N N 45 QZD C08 H15 SING N N 46 QZD C11 H16 SING N N 47 QZD C13 H17 SING N N 48 QZD C17 H18 SING N N 49 QZD C17 H19 SING N N 50 QZD C19 H20 SING N N 51 QZD C19 H21 SING N N 52 QZD C24 H22 SING N N 53 QZD C24 H23 SING N N 54 QZD C25 H24 SING N N 55 QZD C25 H25 SING N N 56 QZD C25 H26 SING N N 57 QZD C26 H27 SING N N 58 QZD C26 H28 SING N N 59 QZD C28 H29 SING N N 60 QZD C28 H30 SING N N 61 QZD C30 H31 SING N N 62 QZD C30 H32 SING N N 63 QZD N03 H33 SING N N 64 QZD N10 H34 SING N N 65 QZD O20 H35 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QZD SMILES ACDLabs 12.01 "C(C(NC(C(CC(C)C)NC(OC1(COCOC1)CC)=O)=O)CO)C2C(=O)NCC2" QZD InChI InChI 1.03 "InChI=1S/C20H35N3O7/c1-4-20(10-28-12-29-11-20)30-19(27)23-16(7-13(2)3)18(26)22-15(9-24)8-14-5-6-21-17(14)25/h13-16,24H,4-12H2,1-3H3,(H,21,25)(H,22,26)(H,23,27)/t14-,15-,16-/m0/s1" QZD InChIKey InChI 1.03 CIPOPMFGDDGOBO-JYJNAYRXSA-N QZD SMILES_CANONICAL CACTVS 3.385 "CCC1(COCOC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" QZD SMILES CACTVS 3.385 "CCC1(COCOC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O" QZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1(COCOC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO" QZD SMILES "OpenEye OEToolkits" 2.0.7 "CCC1(COCOC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QZD "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-{[(5-ethyl-1,3-dioxan-5-yl)oxy]carbonyl}-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" QZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5-ethyl-1,3-dioxan-5-yl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QZD "Create component" 2020-01-17 RCSB QZD "Initial release" 2020-08-12 RCSB QZD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id QZD _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #