data_R06 # _chem_comp.id R06 _chem_comp.name "1-[3,5-bis(2-chloranylethanoyl)-1,3,5-triazinan-1-yl]-2-chloranyl-ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 Cl3 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-21 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.569 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BN1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R06 C1 C1 C 0 1 N N N N N N -32.424 4.486 14.199 1.887 2.581 0.047 C1 R06 1 R06 C2 C2 C 0 1 N N N N N N -33.060 5.814 13.914 0.454 2.269 0.394 C2 R06 2 R06 N1 N1 N 0 1 N N N N N N -32.424 6.948 14.272 0.151 1.125 1.039 N1 R06 3 R06 C3 C3 C 0 1 N N N N N N -31.000 7.230 14.111 1.205 0.170 1.419 C3 R06 4 R06 N2 N2 N 0 1 N N N N N N -30.902 8.353 13.164 0.794 -1.168 0.966 N2 R06 5 R06 C4 C4 C 0 1 N N N N N N -30.353 8.252 11.929 1.637 -1.947 0.259 C4 R06 6 R06 C5 C5 C 0 1 N N N N N N -30.146 9.497 11.122 3.020 -1.451 -0.077 C5 R06 7 R06 O1 O1 O 0 1 N N N N N N -30.011 7.173 11.454 1.282 -3.048 -0.107 O1 R06 8 R06 C6 C6 C 0 1 N N N N N N -31.521 9.558 13.729 -0.560 -1.634 1.304 C6 R06 9 R06 N3 N3 N 0 1 N N N N N N -32.945 9.294 13.970 -1.513 -0.576 0.931 N3 R06 10 R06 C7 C7 C 0 1 N N N N N N -33.898 10.125 13.499 -2.606 -0.859 0.194 C7 R06 11 R06 C8 C8 C 0 1 N N N N N N -35.361 9.705 13.511 -3.569 0.239 -0.177 C8 R06 12 R06 O2 O2 O 0 1 N N N N N N -33.602 11.240 13.088 -2.814 -1.997 -0.170 O2 R06 13 R06 C9 C9 C 0 1 N N N N N N -33.137 8.110 14.818 -1.242 0.801 1.388 C9 R06 14 R06 O3 O3 O 0 1 N N N N N N -34.125 5.858 13.308 -0.426 3.046 0.093 O3 R06 15 R06 H1 H1 H 0 1 N N N N N N -32.337 4.376 15.290 2.480 2.629 0.960 H1 R06 16 R06 H2 H2 H 0 1 N N N N N N -33.083 3.699 13.802 2.282 1.800 -0.603 H2 R06 17 R06 H4 H4 H 0 1 N N N N N N -30.481 6.347 13.709 2.144 0.449 0.941 H4 R06 18 R06 H5 H5 H 0 1 N N N N N N -30.556 7.508 15.078 1.329 0.171 2.502 H5 R06 19 R06 H6 H6 H 0 1 N N N N N N -30.886 9.620 10.317 2.944 -0.539 -0.670 H6 R06 20 R06 H7 H7 H 0 1 N N N N N N -30.114 10.410 11.734 3.564 -1.242 0.844 H7 R06 21 R06 H9 H9 H 0 1 N N N N N N -31.028 9.816 14.678 -0.785 -2.545 0.750 H9 R06 22 R06 H10 H10 H 0 1 N N N N N N -31.415 10.394 13.022 -0.626 -1.827 2.375 H10 R06 23 R06 H11 H11 H 0 1 N N N N N N -35.838 9.205 14.367 -3.973 0.690 0.729 H11 R06 24 R06 H12 H12 H 0 1 N N N N N N -36.132 10.187 12.892 -3.048 0.998 -0.760 H12 R06 25 R06 H14 H14 H 0 1 N N N N N N -32.755 8.325 15.827 -1.376 0.867 2.467 H14 R06 26 R06 H15 H15 H 0 1 N N N N N N -34.211 7.879 14.874 -1.917 1.495 0.889 H15 R06 27 R06 CL1 CL1 CL 0 0 N Y N N N N ? ? ? -4.918 -0.451 -1.156 CL1 R06 28 R06 CL2 CL2 CL 0 0 N Y N N N N ? ? ? 1.967 4.168 -0.805 CL2 R06 29 R06 CL3 CL3 CL 0 0 N Y N N N N ? ? ? 3.898 -2.711 -1.021 CL3 R06 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R06 C5 C4 SING N N 1 R06 O1 C4 DOUB N N 2 R06 C4 N2 SING N N 3 R06 O2 C7 DOUB N N 4 R06 N2 C6 SING N N 5 R06 N2 C3 SING N N 6 R06 O3 C2 DOUB N N 7 R06 C7 C8 SING N N 8 R06 C7 N3 SING N N 9 R06 C6 N3 SING N N 10 R06 C2 C1 SING N N 11 R06 C2 N1 SING N N 12 R06 N3 C9 SING N N 13 R06 C3 N1 SING N N 14 R06 N1 C9 SING N N 15 R06 C1 H1 SING N N 16 R06 C1 H2 SING N N 17 R06 C3 H4 SING N N 18 R06 C3 H5 SING N N 19 R06 C5 H6 SING N N 20 R06 C5 H7 SING N N 21 R06 C6 H9 SING N N 22 R06 C6 H10 SING N N 23 R06 C8 H11 SING N N 24 R06 C8 H12 SING N N 25 R06 C9 H14 SING N N 26 R06 C9 H15 SING N N 27 R06 C8 CL1 SING N N 28 R06 C1 CL2 SING N N 29 R06 C5 CL3 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R06 InChI InChI 1.06 "InChI=1S/C9H12Cl3N3O3/c10-1-7(16)13-4-14(8(17)2-11)6-15(5-13)9(18)3-12/h1-6H2" R06 InChIKey InChI 1.06 FIABSBGSWCLPPP-UHFFFAOYSA-N R06 SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)N1CN(CN(C1)C(=O)CCl)C(=O)CCl" R06 SMILES CACTVS 3.385 "ClCC(=O)N1CN(CN(C1)C(=O)CCl)C(=O)CCl" R06 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1N(CN(CN1C(=O)CCl)C(=O)CCl)C(=O)CCl" R06 SMILES "OpenEye OEToolkits" 3.1.0.0 "C1N(CN(CN1C(=O)CCl)C(=O)CCl)C(=O)CCl" # _pdbx_chem_comp_identifier.comp_id R06 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "1-[3,5-bis(2-chloranylethanoyl)-1,3,5-triazinan-1-yl]-2-chloranyl-ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R06 "Create component" 2022-11-21 PDBE R06 "Modify coordinates" 2022-11-23 PDBE R06 "Modify PCM" 2025-02-06 PDBE R06 "Initial release" 2025-03-26 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C5 SG ? ? 2 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C1 SG ? ? 3 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C8 SG ? ? #