data_R0B
#
_chem_comp.id R0B
_chem_comp.name "(2~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-5-butyl-2,3-dihydro-1,3-thiazole-4-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H19 N O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "hydrolyzed faropenem (ring-open form)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-24
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 289.348
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R0B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7A61
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R0B C10 C1 C 0 1 N N N N N N 19.432 4.111 19.006 6.088 1.424 -0.864 C10 R0B 1
R0B C17 C2 C 0 1 N N N N N N 12.459 8.859 22.859 -3.480 1.816 -1.207 C17 R0B 2
R0B C13 C3 C 0 1 N N R N N N 16.021 10.022 21.897 -1.090 0.235 -0.556 C13 R0B 3
R0B C15 C4 C 0 1 N N R N N N 13.787 9.533 23.031 -3.051 1.563 0.240 C15 R0B 4
R0B C18 C5 C 0 1 N N N N N N 13.934 10.773 20.818 -3.264 -0.879 -0.133 C18 R0B 5
R0B C02 C6 C 0 1 N N N N N N 17.634 11.013 18.611 1.763 -2.032 0.204 C02 R0B 6
R0B C04 C7 C 0 1 N N N N N N 17.161 10.225 19.908 0.936 -0.895 0.044 C04 R0B 7
R0B C05 C8 C 0 1 N N N N N N 17.731 8.883 20.271 1.391 0.324 0.366 C05 R0B 8
R0B C07 C9 C 0 1 N N N N N N 18.482 7.984 19.599 2.760 0.648 0.909 C07 R0B 9
R0B C08 C10 C 0 1 N N N N N N 18.790 6.541 19.989 3.729 0.872 -0.253 C08 R0B 10
R0B C09 C11 C 0 1 N N N N N N 19.055 5.608 18.755 5.118 1.200 0.298 C09 R0B 11
R0B C14 C12 C 0 1 N N S N N N 14.529 9.669 21.658 -2.336 0.213 0.331 C14 R0B 12
R0B N12 N1 N 0 1 N N N N N N 16.532 10.846 20.822 -0.355 -1.031 -0.447 N12 R0B 13
R0B O01 O1 O 0 1 N N N N N N 17.742 12.225 18.690 1.263 -3.267 -0.017 O01 R0B 14
R0B O03 O2 O 0 1 N N N N N N 17.819 10.253 17.631 2.925 -1.897 0.540 O03 R0B 15
R0B O16 O3 O 0 1 N N N N N N 14.608 8.743 23.904 -4.204 1.550 1.084 O16 R0B 16
R0B O19 O4 O 0 1 N N N N N N 13.513 10.578 19.694 -2.961 -1.569 -1.077 O19 R0B 17
R0B S06 S1 S 0 1 N N N N N N 17.081 8.507 21.902 0.095 1.485 0.038 S06 R0B 18
R0B H1 H1 H 0 1 N N N N N N 19.582 3.604 18.042 6.143 0.520 -1.471 H1 R0B 19
R0B H102 H2 H 0 0 N N N N N N 20.359 4.060 19.595 5.735 2.253 -1.478 H102 R0B 20
R0B H101 H3 H 0 0 N N N N N N 18.619 3.616 19.558 7.078 1.658 -0.472 H101 R0B 21
R0B H171 H4 H 0 0 N N N N N N 11.960 8.776 23.836 -4.076 0.975 -1.561 H171 R0B 22
R0B H172 H5 H 0 0 N N N N N N 11.833 9.452 22.176 -4.074 2.729 -1.255 H172 R0B 23
R0B H173 H6 H 0 0 N N N N N N 12.610 7.854 22.438 -2.595 1.924 -1.834 H173 R0B 24
R0B H131 H7 H 0 0 N N N N N N 16.147 10.504 22.878 -1.363 0.430 -1.593 H131 R0B 25
R0B H151 H8 H 0 0 N N N N N N 13.637 10.539 23.451 -2.374 2.355 0.562 H151 R0B 26
R0B H071 H10 H 0 0 N N N N N N 19.468 8.462 19.500 2.705 1.552 1.516 H071 R0B 27
R0B H3 H11 H 0 1 N N N N N N 18.009 7.910 18.609 3.112 -0.181 1.522 H3 R0B 28
R0B H082 H12 H 0 0 N N N N N N 17.934 6.141 20.552 3.784 -0.032 -0.860 H082 R0B 29
R0B H081 H13 H 0 0 N N N N N N 19.684 6.536 20.629 3.376 1.700 -0.867 H081 R0B 30
R0B H091 H14 H 0 0 N N N N N N 19.880 6.057 18.182 5.471 0.371 0.911 H091 R0B 31
R0B H092 H15 H 0 0 N N N N N N 18.140 5.612 18.145 5.064 2.104 0.905 H092 R0B 32
R0B H141 H16 H 0 0 N N N N N N 14.464 8.713 21.118 -2.043 0.026 1.365 H141 R0B 33
R0B H4 H17 H 0 1 N N N N N N 17.154 11.521 21.220 -0.738 -1.886 -0.696 H4 R0B 34
R0B H5 H18 H 0 1 N N N N N N 18.008 12.575 17.848 1.902 -3.980 0.117 H5 R0B 35
R0B H161 H20 H 0 0 N N N N N N 14.176 8.647 24.745 -4.707 2.375 1.076 H161 R0B 36
R0B O11 O11 O 0 1 N N N N N N 13.934 12.024 21.379 -4.429 -1.085 0.502 O11 R0B 37
R0B H2 H19 H 0 1 N N N N N N 13.570 12.648 20.762 -4.991 -1.797 0.167 H2 R0B 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R0B O03 C02 DOUB N N 1
R0B C02 O01 SING N N 2
R0B C02 C04 SING N N 3
R0B C09 C10 SING N N 4
R0B C09 C08 SING N N 5
R0B C07 C08 SING N N 6
R0B C07 C05 SING N N 7
R0B O19 C18 DOUB N N 8
R0B C04 C05 DOUB N N 9
R0B C04 N12 SING N N 10
R0B C05 S06 SING N N 11
R0B C18 C14 SING N N 12
R0B N12 C13 SING N N 13
R0B C14 C13 SING N N 14
R0B C14 C15 SING N N 15
R0B C13 S06 SING N N 16
R0B C17 C15 SING N N 17
R0B C15 O16 SING N N 18
R0B C10 H1 SING N N 19
R0B C10 H102 SING N N 20
R0B C10 H101 SING N N 21
R0B C17 H171 SING N N 22
R0B C17 H172 SING N N 23
R0B C17 H173 SING N N 24
R0B C13 H131 SING N N 25
R0B C15 H151 SING N N 26
R0B C07 H071 SING N N 27
R0B C07 H3 SING N N 28
R0B C08 H082 SING N N 29
R0B C08 H081 SING N N 30
R0B C09 H091 SING N N 31
R0B C09 H092 SING N N 32
R0B C14 H141 SING N N 33
R0B N12 H4 SING N N 34
R0B O01 H5 SING N N 35
R0B O16 H161 SING N N 36
R0B O11 C18 SING N N 37
R0B O11 H2 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R0B InChI InChI 1.03 "InChI=1S/C12H19NO5S/c1-3-4-5-7-9(12(17)18)13-10(19-7)8(6(2)14)11(15)16/h6,8,10,13-14H,3-5H2,1-2H3,(H,15,16)(H,17,18)/t6-,8-,10-/m1/s1"
R0B InChIKey InChI 1.03 XZQPLQFTHPIJQP-GTNGPMTGSA-N
R0B SMILES_CANONICAL CACTVS 3.385 "CCCCC1=C(N[C@H](S1)[C@@H]([C@@H](C)O)C(O)=O)C(O)=O"
R0B SMILES CACTVS 3.385 "CCCCC1=C(N[CH](S1)[CH]([CH](C)O)C(O)=O)C(O)=O"
R0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC1=C(N[C@H](S1)[C@@H]([C@@H](C)O)C(=O)O)C(=O)O"
R0B SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC1=C(NC(S1)C(C(C)O)C(=O)O)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id R0B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-5-butyl-2,3-dihydro-1,3-thiazole-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R0B "Create component" 2020-08-24 PDBE
R0B "Initial release" 2021-02-24 RCSB
R0B "Modify synonyms" 2021-03-01 PDBE
R0B "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id R0B
_pdbx_chem_comp_synonyms.name "hydrolyzed faropenem (ring-open form)"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id R0B
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C18
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#