data_R11
#
_chem_comp.id R11
_chem_comp.name "4-{[1-METHYL-5-(2-METHYL-BENZOIMIDAZOL-1-YLMETHYL)-1H-BENZOIMIDAZOL-2-YLMETHYL]-AMINO}-BENZAMIDINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H25 N7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-11-24
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 423.513
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R11
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1G36
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R11 N1 N1 N 0 1 N N N -4.986 10.071 19.745 -2.163 1.109 8.907 N1 R11 1
R11 N2 N2 N 0 1 N N N -3.070 10.713 18.952 -0.676 -0.608 9.392 N2 R11 2
R11 C1 C1 C 0 1 N N N -3.740 9.713 19.491 -1.264 0.258 8.497 C1 R11 3
R11 C2 C2 C 0 1 Y N N -3.207 8.444 19.776 -0.876 0.223 7.070 C2 R11 4
R11 C3 C3 C 0 1 Y N N -3.964 7.475 20.510 -1.471 1.100 6.162 C3 R11 5
R11 C4 C4 C 0 1 Y N N -3.447 6.201 20.798 -1.107 1.066 4.834 C4 R11 6
R11 C5 C5 C 0 1 Y N N -2.149 5.838 20.366 -0.148 0.157 4.397 C5 R11 7
R11 C6 C6 C 0 1 Y N N -1.371 6.764 19.643 0.441 -0.721 5.300 C6 R11 8
R11 C7 C7 C 0 1 Y N N -1.885 8.048 19.349 0.085 -0.687 6.630 C7 R11 9
R11 N N N 0 1 N N N -1.597 4.533 20.648 0.217 0.125 3.054 N R11 10
R11 C C C 0 1 N N N -2.123 3.525 21.606 1.227 -0.830 2.593 C R11 11
R11 N3 N3 N 0 1 Y N N -3.427 4.397 23.581 0.778 -1.295 0.187 N3 R11 12
R11 C8 C8 C 0 1 Y N N -2.187 3.984 23.076 1.439 -0.662 1.111 C8 R11 13
R11 N9 N9 N 0 1 Y N N -1.032 3.998 23.896 2.349 0.174 0.544 N9 R11 14
R11 C3A C3A C 0 1 Y N N -1.631 4.496 25.063 2.230 0.045 -0.824 C3A R11 15
R11 C7A C7A C 0 1 Y N N -3.050 4.731 24.859 1.219 -0.908 -1.037 C7A R11 16
R11 C10 C10 C 0 1 Y N N -1.043 4.780 26.340 2.877 0.619 -1.910 C10 R11 17
R11 C11 C11 C 0 1 Y N N -1.856 5.296 27.373 2.515 0.257 -3.190 C11 R11 18
R11 C12 C12 C 0 1 Y N N -3.248 5.526 27.169 1.513 -0.679 -3.399 C12 R11 19
R11 C13 C13 C 0 1 Y N N -3.857 5.247 25.917 0.869 -1.259 -2.343 C13 R11 20
R11 C14 C14 C 0 1 N N N 0.383 3.616 23.599 3.280 1.055 1.255 C14 R11 21
R11 C9 C9 C 0 1 N N N -4.094 6.089 28.303 1.131 -1.062 -4.806 C9 R11 22
R11 N4 N4 N 0 1 Y N N -3.588 5.790 29.678 0.067 -0.174 -5.281 N4 R11 23
R11 C15 C15 C 0 1 Y N N -3.720 4.649 30.501 0.233 1.006 -5.935 C15 R11 24
R11 N16 N16 N 0 1 Y N N -3.151 4.589 31.781 -0.924 1.532 -6.210 N16 R11 25
R11 C17 C17 C 0 1 Y N N -2.577 5.861 31.792 -1.913 0.724 -5.750 C17 R11 26
R11 C18 C18 C 0 1 Y N N -2.835 6.576 30.558 -1.291 -0.385 -5.153 C18 R11 27
R11 C19 C19 C 0 1 Y N N -1.829 6.482 32.845 -3.308 0.800 -5.773 C19 R11 28
R11 C20 C20 C 0 1 Y N N -1.337 7.795 32.645 -4.054 -0.197 -5.211 C20 R11 29
R11 C21 C21 C 0 1 Y N N -1.578 8.496 31.438 -3.440 -1.290 -4.617 C21 R11 30
R11 C22 C22 C 0 1 Y N N -2.325 7.905 30.387 -2.064 -1.386 -4.583 C22 R11 31
R11 C23 C23 C 0 1 N N N -4.481 3.410 30.023 1.565 1.616 -6.291 C23 R11 32
R11 HN1 HN1 H 0 1 N N N -5.227 11.042 19.548 -2.417 1.132 9.842 HN1 R11 33
R11 HN21 1HN2 H 0 0 N N N -2.108 10.436 18.755 -0.931 -0.585 10.328 HN21 R11 34
R11 HN22 2HN2 H 0 0 N N N -3.112 11.552 19.530 -0.008 -1.241 9.087 HN22 R11 35
R11 HC3 HC3 H 0 1 N N N -4.979 7.718 20.865 -2.216 1.806 6.500 HC3 R11 36
R11 HC4 HC4 H 0 1 N N N -4.062 5.482 21.365 -1.567 1.745 4.131 HC4 R11 37
R11 HC6 HC6 H 0 1 N N N -0.358 6.483 19.306 1.186 -1.425 4.958 HC6 R11 38
R11 HC7 HC7 H 0 1 N N N -1.248 8.747 18.781 0.547 -1.367 7.330 HC7 R11 39
R11 HN HN H 0 1 N N N -0.623 4.689 20.909 -0.196 0.735 2.424 HN R11 40
R11 H1C H1C H 0 1 N N N -3.124 3.166 21.272 0.887 -1.846 2.799 H1C R11 41
R11 H2C H2C H 0 1 N N N -1.538 2.578 21.525 2.165 -0.649 3.118 H2C R11 42
R11 H10C CH10 H 0 0 N N N 0.029 4.602 26.526 3.657 1.348 -1.752 H10C R11 43
R11 H11C CH11 H 0 0 N N N -1.398 5.522 28.350 3.014 0.705 -4.036 H11C R11 44
R11 H13C CH13 H 0 0 N N N -4.935 5.427 25.769 0.091 -1.987 -2.517 H13C R11 45
R11 H141 1H14 H 0 0 N N N 1.292 3.627 24.244 4.211 0.521 1.445 H141 R11 46
R11 H142 2H14 H 0 0 N N N 0.320 2.572 23.212 3.483 1.936 0.646 H142 R11 47
R11 H143 3H14 H 0 0 N N N 0.660 4.223 22.706 2.837 1.362 2.202 H143 R11 48
R11 HC91 1HC9 H 0 0 N N N -4.229 7.188 28.173 2.000 -0.967 -5.457 HC91 R11 49
R11 HC92 2HC9 H 0 0 N N N -5.151 5.749 28.199 0.778 -2.093 -4.819 HC92 R11 50
R11 H19C CH19 H 0 0 N N N -1.634 5.957 33.795 -3.796 1.646 -6.233 H19C R11 51
R11 H20C CH20 H 0 0 N N N -0.754 8.281 33.445 -5.132 -0.135 -5.231 H20C R11 52
R11 H21C CH21 H 0 0 N N N -1.178 9.516 31.314 -4.043 -2.071 -4.177 H21C R11 53
R11 H22C CH22 H 0 0 N N N -2.505 8.467 29.455 -1.592 -2.239 -4.118 H22C R11 54
R11 H231 1H23 H 0 0 N N N -4.585 2.509 30.672 1.873 1.266 -7.276 H231 R11 55
R11 H232 2H23 H 0 0 N N N -5.502 3.731 29.712 1.475 2.702 -6.302 H232 R11 56
R11 H233 3H23 H 0 0 N N N -4.037 3.085 29.052 2.308 1.320 -5.551 H233 R11 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R11 N1 C1 DOUB N Z 1
R11 N1 HN1 SING N N 2
R11 N2 C1 SING N N 3
R11 N2 HN21 SING N N 4
R11 N2 HN22 SING N N 5
R11 C1 C2 SING N N 6
R11 C2 C3 DOUB Y N 7
R11 C2 C7 SING Y N 8
R11 C3 C4 SING Y N 9
R11 C3 HC3 SING N N 10
R11 C4 C5 DOUB Y N 11
R11 C4 HC4 SING N N 12
R11 C5 C6 SING Y N 13
R11 C5 N SING N N 14
R11 C6 C7 DOUB Y N 15
R11 C6 HC6 SING N N 16
R11 C7 HC7 SING N N 17
R11 N C SING N N 18
R11 N HN SING N N 19
R11 C C8 SING N N 20
R11 C H1C SING N N 21
R11 C H2C SING N N 22
R11 N3 C8 DOUB Y N 23
R11 N3 C7A SING Y N 24
R11 C8 N9 SING Y N 25
R11 N9 C3A SING Y N 26
R11 N9 C14 SING N N 27
R11 C3A C7A DOUB Y N 28
R11 C3A C10 SING Y N 29
R11 C7A C13 SING Y N 30
R11 C10 C11 DOUB Y N 31
R11 C10 H10C SING N N 32
R11 C11 C12 SING Y N 33
R11 C11 H11C SING N N 34
R11 C12 C13 DOUB Y N 35
R11 C12 C9 SING N N 36
R11 C13 H13C SING N N 37
R11 C14 H141 SING N N 38
R11 C14 H142 SING N N 39
R11 C14 H143 SING N N 40
R11 C9 N4 SING N N 41
R11 C9 HC91 SING N N 42
R11 C9 HC92 SING N N 43
R11 N4 C15 SING Y N 44
R11 N4 C18 SING Y N 45
R11 C15 N16 DOUB Y N 46
R11 C15 C23 SING N N 47
R11 N16 C17 SING Y N 48
R11 C17 C18 DOUB Y N 49
R11 C17 C19 SING Y N 50
R11 C18 C22 SING Y N 51
R11 C19 C20 DOUB Y N 52
R11 C19 H19C SING N N 53
R11 C20 C21 SING Y N 54
R11 C20 H20C SING N N 55
R11 C21 C22 DOUB Y N 56
R11 C21 H21C SING N N 57
R11 C22 H22C SING N N 58
R11 C23 H231 SING N N 59
R11 C23 H232 SING N N 60
R11 C23 H233 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R11 SMILES ACDLabs 10.04 "[N@H]=C(N)c1ccc(cc1)NCc3nc2cc(ccc2n3C)Cn4c5ccccc5nc4C"
R11 SMILES_CANONICAL CACTVS 3.341 "Cn1c(CNc2ccc(cc2)C(N)=N)nc3cc(Cn4c(C)nc5ccccc45)ccc13"
R11 SMILES CACTVS 3.341 "Cn1c(CNc2ccc(cc2)C(N)=N)nc3cc(Cn4c(C)nc5ccccc45)ccc13"
R11 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/c1ccc(cc1)NCc2nc3cc(ccc3n2C)Cn4c(nc5c4cccc5)C)\N"
R11 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cc1)NCc2nc3cc(ccc3n2C)Cn4c(nc5c4cccc5)C)N"
R11 InChI InChI 1.03 "InChI=1S/C25H25N7/c1-16-29-20-5-3-4-6-23(20)32(16)15-17-7-12-22-21(13-17)30-24(31(22)2)14-28-19-10-8-18(9-11-19)25(26)27/h3-13,28H,14-15H2,1-2H3,(H3,26,27)"
R11 InChIKey InChI 1.03 IRKPNOLLMNHSOU-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R11 "SYSTEMATIC NAME" ACDLabs 10.04 "4-[({1-methyl-5-[(2-methyl-1H-benzimidazol-1-yl)methyl]-1H-benzimidazol-2-yl}methyl)amino]benzenecarboximidamide"
R11 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[1-methyl-5-[(2-methylbenzimidazol-1-yl)methyl]benzimidazol-2-yl]methylamino]benzenecarboximidamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R11 "Create component" 2000-11-24 EBI
R11 "Modify descriptor" 2011-06-04 RCSB
#