data_R1D # _chem_comp.id R1D _chem_comp.name "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H18 F3 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-23 _chem_comp.pdbx_modified_date 2021-02-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.380 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R1D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VL3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R1D C01 C1 C 0 1 N N N 9.422 40.624 -11.413 -6.278 0.339 2.919 C01 R1D 1 R1D C03 C2 C 0 1 Y N N 11.654 40.715 -12.120 -6.201 0.296 0.542 C03 R1D 2 R1D C04 C3 C 0 1 Y N N 12.018 41.905 -12.731 -4.822 0.400 0.640 C04 R1D 3 R1D C05 C4 C 0 1 Y N N 13.284 42.432 -12.527 -4.048 0.431 -0.504 C05 R1D 4 R1D C06 C5 C 0 1 N N N 13.691 43.749 -13.195 -2.549 0.544 -0.396 C06 R1D 5 R1D C07 C6 C 0 1 N N N 13.767 43.709 -14.721 -1.936 -0.857 -0.327 C07 R1D 6 R1D C09 C7 C 0 1 N N N 14.986 41.927 -16.003 0.277 -1.860 -0.146 C09 R1D 7 R1D C11 C8 C 0 1 N N N 15.039 40.487 -16.507 1.749 -1.750 -0.039 C11 R1D 8 R1D C12 C9 C 0 1 N N N 15.738 40.139 -17.777 2.532 -2.893 0.032 C12 R1D 9 R1D C14 C10 C 0 1 N N N 15.762 38.719 -18.235 3.986 -2.726 0.138 C14 R1D 10 R1D C17 C11 C 0 1 N N N 14.416 38.045 -16.184 3.634 -0.401 0.083 C17 R1D 11 R1D C19 C12 C 0 1 Y N N 13.720 36.979 -15.338 4.203 0.963 0.102 C19 R1D 12 R1D C20 C13 C 0 1 Y N N 12.391 37.159 -14.995 5.583 1.145 0.207 C20 R1D 13 R1D C21 C14 C 0 1 Y N N 11.737 36.212 -14.225 6.108 2.421 0.224 C21 R1D 14 R1D C22 C15 C 0 1 Y N N 12.413 35.082 -13.798 5.270 3.518 0.137 C22 R1D 15 R1D C23 C16 C 0 1 Y N N 13.744 34.900 -14.139 3.901 3.345 0.032 C23 R1D 16 R1D C24 C17 C 0 1 Y N N 14.402 35.847 -14.907 3.364 2.074 0.009 C24 R1D 17 R1D C25 C18 C 0 1 N N N 15.869 35.630 -15.275 1.873 1.887 -0.110 C25 R1D 18 R1D C29 C19 C 0 1 Y N N 14.180 41.771 -11.699 -4.646 0.359 -1.749 C29 R1D 19 R1D C30 C20 C 0 1 Y N N 13.815 40.582 -11.087 -6.020 0.256 -1.854 C30 R1D 20 R1D C31 C21 C 0 1 Y N N 12.552 40.055 -11.297 -6.802 0.224 -0.711 C31 R1D 21 R1D F26 F1 F 0 1 N N N 16.009 35.633 -16.633 1.398 1.199 1.011 F26 R1D 22 R1D F27 F2 F 0 1 N N N 16.289 34.426 -14.796 1.250 3.137 -0.188 F27 R1D 23 R1D F28 F3 F 0 1 N N N 16.630 36.624 -14.731 1.587 1.151 -1.265 F28 R1D 24 R1D N08 N1 N 0 1 N N N 13.843 42.346 -15.211 -0.479 -0.747 -0.221 N08 R1D 25 R1D N16 N2 N 0 1 N N N 15.107 37.690 -17.451 4.480 -1.469 0.159 N16 R1D 26 R1D N18 N3 N 0 1 N N N 14.388 39.454 -15.726 2.335 -0.543 -0.016 N18 R1D 27 R1D O02 O1 O 0 1 N N N 10.379 40.182 -12.332 -6.963 0.260 1.667 O02 R1D 28 R1D O10 O2 O 0 1 N N N 15.858 42.689 -16.245 -0.250 -2.955 -0.166 O10 R1D 29 R1D O13 O3 O 0 1 N N N 16.366 41.135 -18.534 1.970 -4.128 0.007 O13 R1D 30 R1D O15 O4 O 0 1 N N N 16.313 38.428 -19.241 4.725 -3.692 0.204 O15 R1D 31 R1D O32 O5 O 0 1 N N N 12.181 38.853 -10.679 -8.154 0.122 -0.812 O32 R1D 32 R1D H1 H1 H 0 1 N N N 8.450 40.163 -11.644 -5.585 -0.499 3.007 H1 R1D 33 R1D H2 H2 H 0 1 N N N 9.730 40.338 -10.397 -5.723 1.276 2.971 H2 R1D 34 R1D H3 H3 H 0 1 N N N 9.333 41.719 -11.475 -7.001 0.299 3.733 H3 R1D 35 R1D H4 H4 H 0 1 N N N 11.315 42.422 -13.367 -4.353 0.456 1.611 H4 R1D 36 R1D H5 H5 H 0 1 N N N 14.683 44.032 -12.812 -2.160 1.068 -1.268 H5 R1D 37 R1D H6 H6 H 0 1 N N N 12.955 44.516 -12.911 -2.291 1.098 0.507 H6 R1D 38 R1D H7 H7 H 0 1 N N N 14.662 44.258 -15.049 -2.326 -1.381 0.546 H7 R1D 39 R1D H8 H8 H 0 1 N N N 12.869 44.189 -15.137 -2.194 -1.411 -1.229 H8 R1D 40 R1D H9 H9 H 0 1 N N N 11.863 38.040 -15.329 6.239 0.290 0.276 H9 R1D 41 R1D H10 H10 H 0 1 N N N 10.700 36.355 -13.958 7.175 2.564 0.305 H10 R1D 42 R1D H11 H11 H 0 1 N N N 11.903 34.342 -13.199 5.686 4.515 0.150 H11 R1D 43 R1D H12 H12 H 0 1 N N N 14.270 34.018 -13.805 3.252 4.205 -0.036 H12 R1D 44 R1D H13 H13 H 0 1 N N N 15.164 42.184 -11.531 -4.037 0.383 -2.641 H13 R1D 45 R1D H14 H14 H 0 1 N N N 14.516 40.067 -10.447 -6.485 0.199 -2.828 H14 R1D 46 R1D H15 H15 H 0 1 N N N 13.111 41.697 -15.004 -0.058 0.127 -0.205 H15 R1D 47 R1D H16 H16 H 0 1 N N N 15.120 36.740 -17.763 5.437 -1.325 0.228 H16 R1D 48 R1D H17 H17 H 0 1 N N N 16.759 40.746 -19.306 2.608 -4.852 0.062 H17 R1D 49 R1D H18 H18 H 0 1 N N N 12.903 38.531 -10.153 -8.611 0.973 -0.861 H18 R1D 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R1D O15 C14 DOUB N N 1 R1D O13 C12 SING N N 2 R1D C14 C12 SING N N 3 R1D C14 N16 SING N N 4 R1D C12 C11 DOUB N N 5 R1D N16 C17 SING N N 6 R1D F26 C25 SING N N 7 R1D C11 C09 SING N N 8 R1D C11 N18 SING N N 9 R1D O10 C09 DOUB N N 10 R1D C17 N18 DOUB N N 11 R1D C17 C19 SING N N 12 R1D C09 N08 SING N N 13 R1D C19 C20 DOUB Y N 14 R1D C19 C24 SING Y N 15 R1D C25 C24 SING N N 16 R1D C25 F27 SING N N 17 R1D C25 F28 SING N N 18 R1D N08 C07 SING N N 19 R1D C20 C21 SING Y N 20 R1D C24 C23 DOUB Y N 21 R1D C07 C06 SING N N 22 R1D C21 C22 DOUB Y N 23 R1D C23 C22 SING Y N 24 R1D C06 C05 SING N N 25 R1D C04 C05 DOUB Y N 26 R1D C04 C03 SING Y N 27 R1D C05 C29 SING Y N 28 R1D O02 C03 SING N N 29 R1D O02 C01 SING N N 30 R1D C03 C31 DOUB Y N 31 R1D C29 C30 DOUB Y N 32 R1D C31 C30 SING Y N 33 R1D C31 O32 SING N N 34 R1D C01 H1 SING N N 35 R1D C01 H2 SING N N 36 R1D C01 H3 SING N N 37 R1D C04 H4 SING N N 38 R1D C06 H5 SING N N 39 R1D C06 H6 SING N N 40 R1D C07 H7 SING N N 41 R1D C07 H8 SING N N 42 R1D C20 H9 SING N N 43 R1D C21 H10 SING N N 44 R1D C22 H11 SING N N 45 R1D C23 H12 SING N N 46 R1D C29 H13 SING N N 47 R1D C30 H14 SING N N 48 R1D N08 H15 SING N N 49 R1D N16 H16 SING N N 50 R1D O13 H17 SING N N 51 R1D O32 H18 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R1D SMILES ACDLabs 12.01 "COc1c(ccc(c1)CCNC(C=3N=C(c2ccccc2C(F)(F)F)NC(C=3O)=O)=O)O" R1D InChI InChI 1.03 "InChI=1S/C21H18F3N3O5/c1-32-15-10-11(6-7-14(15)28)8-9-25-19(30)16-17(29)20(31)27-18(26-16)12-4-2-3-5-13(12)21(22,23)24/h2-7,10,28-29H,8-9H2,1H3,(H,25,30)(H,26,27,31)" R1D InChIKey InChI 1.03 ZKWBUWGFQUVQAP-UHFFFAOYSA-N R1D SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C(F)(F)F)ccc1O" R1D SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C(F)(F)F)ccc1O" R1D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3C(F)(F)F)O" R1D SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3C(F)(F)F)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R1D "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide" R1D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(3-methoxy-4-oxidanyl-phenyl)ethyl]-5-oxidanyl-6-oxidanylidene-2-[2-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R1D "Create component" 2020-01-23 RCSB R1D "Initial release" 2021-02-10 RCSB ##