data_R1O # _chem_comp.id R1O _chem_comp.name "N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-lysine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H24 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-15 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R1O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D88 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R1O N1 N1 N 0 1 N N N 34.837 -8.990 26.594 1.330 0.415 -0.244 N1 R1O 1 R1O N3 N2 N 0 1 N N N 29.111 -9.018 29.896 7.623 0.270 1.681 N3 R1O 2 R1O C4 C1 C 0 1 Y N N 36.414 -7.206 25.890 -0.125 -1.479 -0.691 C4 R1O 3 R1O C5 C2 C 0 1 Y N N 37.618 -7.034 26.610 -1.408 -1.362 -0.184 C5 R1O 4 R1O C6 C3 C 0 1 Y N N 38.793 -6.823 25.906 -2.024 -2.474 0.359 C6 R1O 5 R1O C7 C4 C 0 1 Y N N 37.662 -6.886 23.813 -0.187 -3.793 -0.078 C7 R1O 6 R1O C8 C5 C 0 1 Y N N 36.444 -7.059 24.456 0.495 -2.724 -0.638 C8 R1O 7 R1O C10 C6 C 0 1 N N N 37.634 -7.043 28.112 -2.125 -0.036 -0.222 C10 R1O 8 R1O C13 C7 C 0 1 N N N 30.982 -10.100 28.676 5.454 1.099 0.901 C13 R1O 9 R1O C1 C8 C 0 1 N N N 33.713 -10.928 25.449 1.094 2.762 -0.827 C1 R1O 10 R1O C11 C9 C 0 1 N N N 32.372 -9.202 26.730 3.238 1.914 0.086 C11 R1O 11 R1O C12 C10 C 0 1 N N N 32.358 -9.960 28.053 4.248 0.767 0.021 C12 R1O 12 R1O C14 C11 C 0 1 N N N 30.415 -8.806 29.222 6.465 -0.048 0.835 C14 R1O 13 R1O C2 C12 C 0 1 N N R 33.626 -9.451 25.882 2.031 1.583 -0.794 C2 R1O 14 R1O C3 C13 C 0 1 N N N 35.111 -7.546 26.579 0.580 -0.290 -1.292 C3 R1O 15 R1O C9 C14 C 0 1 N N N 37.766 -6.837 22.315 0.472 -5.147 -0.014 C9 R1O 16 R1O N2 N3 N 0 1 Y N N 38.779 -6.755 24.570 -1.406 -3.638 0.399 N2 R1O 17 R1O O1 O1 O 0 1 N N N 33.809 -11.782 26.354 1.521 3.946 -1.294 O1 R1O 18 R1O O2 O2 O 0 1 N N N 33.703 -11.174 24.220 -0.042 2.643 -0.433 O2 R1O 19 R1O O3 O3 O 0 1 N N N 35.387 -7.104 23.790 1.752 -2.888 -1.128 O3 R1O 20 R1O O4 O4 O 0 1 N N N 37.337 -8.326 28.655 -3.423 -0.179 0.358 O4 R1O 21 R1O O5 O5 O 0 1 N N N 36.880 -10.004 30.411 -4.687 1.640 -0.851 O5 R1O 22 R1O O6 O6 O 0 1 N N N 36.666 -7.537 30.942 -5.865 0.492 1.063 O6 R1O 23 R1O O7 O7 O 0 1 N N N 38.941 -8.550 30.560 -3.872 2.155 1.482 O7 R1O 24 R1O P1 P1 P 0 1 N N N 37.458 -8.611 30.235 -4.467 1.040 0.484 P1 R1O 25 R1O H1 H1 H 0 1 N N N 34.750 -9.271 27.550 1.973 -0.207 0.221 H1 R1O 26 R1O H3 H3 H 0 1 N N N 28.768 -8.145 30.243 7.336 0.464 2.628 H3 R1O 27 R1O H4 H4 H 0 1 N N N 28.456 -9.397 29.243 8.305 -0.473 1.654 H4 R1O 28 R1O H6 H6 H 0 1 N N N 39.726 -6.713 26.439 -3.025 -2.388 0.757 H6 R1O 29 R1O H8 H8 H 0 1 N N N 38.633 -6.738 28.456 -1.554 0.702 0.341 H8 R1O 30 R1O H9 H9 H 0 1 N N N 36.885 -6.324 28.477 -2.224 0.293 -1.257 H9 R1O 31 R1O H10 H10 H 0 1 N N N 30.293 -10.482 27.909 5.923 2.016 0.545 H10 R1O 32 R1O H11 H11 H 0 1 N N N 31.049 -10.823 29.502 5.126 1.235 1.931 H11 R1O 33 R1O H12 H12 H 0 1 N N N 32.309 -8.126 26.947 2.909 2.050 1.117 H12 R1O 34 R1O H13 H13 H 0 1 N N N 31.492 -9.510 26.146 3.706 2.832 -0.270 H13 R1O 35 R1O H14 H14 H 0 1 N N N 32.761 -10.968 27.877 4.576 0.631 -1.010 H14 R1O 36 R1O H15 H15 H 0 1 N N N 33.005 -9.425 28.764 3.780 -0.150 0.377 H15 R1O 37 R1O H16 H16 H 0 1 N N N 31.126 -8.383 29.947 6.793 -0.184 -0.195 H16 R1O 38 R1O H17 H17 H 0 1 N N N 30.276 -8.099 28.391 5.996 -0.966 1.191 H17 R1O 39 R1O H18 H18 H 0 1 N N N 33.524 -8.851 24.966 2.370 1.360 -1.806 H18 R1O 40 R1O H19 H19 H 0 1 N N N 35.158 -7.186 27.617 -0.155 0.385 -1.730 H19 R1O 41 R1O H20 H20 H 0 1 N N N 34.291 -7.038 26.051 1.268 -0.629 -2.066 H20 R1O 42 R1O H21 H21 H 0 1 N N N 38.817 -6.690 22.024 1.021 -5.239 0.924 H21 R1O 43 R1O H22 H22 H 0 1 N N N 37.397 -7.783 21.891 -0.289 -5.925 -0.067 H22 R1O 44 R1O H23 H23 H 0 1 N N N 37.160 -6.002 21.933 1.162 -5.256 -0.851 H23 R1O 45 R1O H24 H24 H 0 1 N N N 33.873 -12.648 25.968 0.883 4.673 -1.296 H24 R1O 46 R1O H25 H25 H 0 1 N N N 35.924 -7.930 31.386 -6.543 1.174 1.165 H25 R1O 47 R1O H26 H26 H 0 1 N N N 39.244 -9.412 30.820 -3.703 1.830 2.377 H26 R1O 48 R1O H2 H2 H 0 1 N N N 34.648 -7.226 24.375 1.781 -3.137 -2.062 H2 R1O 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R1O C9 C7 SING N N 1 R1O O3 C8 SING N N 2 R1O C7 C8 DOUB Y N 3 R1O C7 N2 SING Y N 4 R1O O2 C1 DOUB N N 5 R1O C8 C4 SING Y N 6 R1O N2 C6 DOUB Y N 7 R1O C1 C2 SING N N 8 R1O C1 O1 SING N N 9 R1O C2 N1 SING N N 10 R1O C2 C11 SING N N 11 R1O C4 C3 SING N N 12 R1O C4 C5 DOUB Y N 13 R1O C6 C5 SING Y N 14 R1O C3 N1 SING N N 15 R1O C5 C10 SING N N 16 R1O C11 C12 SING N N 17 R1O C12 C13 SING N N 18 R1O C10 O4 SING N N 19 R1O O4 P1 SING N N 20 R1O C13 C14 SING N N 21 R1O C14 N3 SING N N 22 R1O P1 O5 DOUB N N 23 R1O P1 O7 SING N N 24 R1O P1 O6 SING N N 25 R1O N1 H1 SING N N 26 R1O N3 H3 SING N N 27 R1O N3 H4 SING N N 28 R1O C6 H6 SING N N 29 R1O C10 H8 SING N N 30 R1O C10 H9 SING N N 31 R1O C13 H10 SING N N 32 R1O C13 H11 SING N N 33 R1O C11 H12 SING N N 34 R1O C11 H13 SING N N 35 R1O C12 H14 SING N N 36 R1O C12 H15 SING N N 37 R1O C14 H16 SING N N 38 R1O C14 H17 SING N N 39 R1O C2 H18 SING N N 40 R1O C3 H19 SING N N 41 R1O C3 H20 SING N N 42 R1O C9 H21 SING N N 43 R1O C9 H22 SING N N 44 R1O C9 H23 SING N N 45 R1O O1 H24 SING N N 46 R1O O6 H25 SING N N 47 R1O O7 H26 SING N N 48 R1O O3 H2 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R1O SMILES ACDLabs 12.01 "Oc1c(CNC(CCCCN)C(=O)O)c(cnc1C)COP(=O)(O)O" R1O InChI InChI 1.03 "InChI=1S/C14H24N3O7P/c1-9-13(18)11(10(6-16-9)8-24-25(21,22)23)7-17-12(14(19)20)4-2-3-5-15/h6,12,17-18H,2-5,7-8,15H2,1H3,(H,19,20)(H2,21,22,23)/t12-/m1/s1" R1O InChIKey InChI 1.03 GQMAOPRRHWJXFB-GFCCVEGCSA-N R1O SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@H](CCCCN)C(O)=O)c1O" R1O SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCCCN)C(O)=O)c1O" R1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](CCCCN)C(=O)O)O" R1O SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CCCCN)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R1O "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-lysine" R1O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-6-azanyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R1O "Create component" 2022-06-15 RCSB R1O "Initial release" 2022-11-16 RCSB #