data_R1R # _chem_comp.id R1R _chem_comp.name "[2-[2-[[1-[4-[(1S)-1-[[5-fluoranyl-4-[(4S)-2-oxidanylidene-4-propan-2-yl-1,3-oxazolidin-3-yl]pyrimidin-2-yl]amino]ethyl]phenyl]piperidin-4-yl]sulfamoyl]ethylsulfanylmethyl]-3-oxidanylidene-propyl]-trimethyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H49 F N7 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-11-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 694.904 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R1R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HB9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R1R CAS C1 C 0 1 Y N N N N N -8.539 -4.027 -30.559 3.231 -3.800 -0.666 CAS R1R 1 R1R CAU C2 C 0 1 Y N N N N N -9.899 -2.800 -32.139 1.059 -3.273 0.203 CAU R1R 2 R1R CAI C3 C 0 1 N N N N N N -12.103 -9.999 -31.096 9.691 4.239 0.817 CAI R1R 3 R1R CAK C4 C 0 1 N N N N N N -10.075 -9.780 -31.996 7.933 2.910 1.412 CAK R1R 4 R1R CAQ C5 C 0 1 N N N N N N -9.631 -3.804 -27.288 5.871 -3.818 1.449 CAQ R1R 5 R1R CAW C6 C 0 1 N N N N N N -11.252 -2.118 -34.106 -0.975 -2.629 1.217 CAW R1R 6 R1R CAR C7 C 0 1 Y N N N N N -9.621 -4.155 -29.689 3.812 -3.022 0.318 CAR R1R 7 R1R CAP C8 C 0 1 N N S N N N -9.525 -4.825 -28.456 5.311 -2.881 0.377 CAP R1R 8 R1R CAT C9 C 0 1 Y N N N N N -8.674 -3.359 -31.770 1.857 -3.927 -0.727 CAT R1R 9 R1R C4 C10 C 0 1 Y N N N N N -8.895 -8.483 -30.301 8.353 0.797 0.290 C4 R1R 10 R1R C5 C11 C 0 1 Y N N N N N -7.616 -9.043 -30.362 9.269 0.007 -0.409 C5 R1R 11 R1R C6 C12 C 0 1 Y N N N N N -6.572 -8.403 -29.734 8.920 -1.297 -0.711 C6 R1R 12 R1R N1 N1 N 0 1 Y N N N N N -6.810 -7.210 -29.043 7.735 -1.754 -0.332 N1 R1R 13 R1R N3 N2 N 0 1 Y N N N N N -9.058 -7.331 -29.624 7.184 0.272 0.638 N3 R1R 14 R1R CBD C13 C 0 1 N N N N N N -8.688 3.885 -32.186 -6.631 0.508 -0.752 CBD R1R 15 R1R CBC C14 C 0 1 N N N N N N -8.938 3.746 -33.667 -5.486 -0.272 -0.103 CBC R1R 16 R1R SBA S1 S 0 1 N N N N N N -10.535 2.966 -33.950 -4.022 -0.199 -1.172 SBA R1R 17 R1R OBB O1 O 0 1 N N N N N N -10.705 2.842 -35.453 -4.242 -0.934 -2.369 OBB R1R 18 R1R OBE O2 O 0 1 N N N N N N -11.579 3.928 -33.354 -3.497 1.120 -1.209 OBE R1R 19 R1R NAZ N3 N 0 1 N N N N N N -10.636 1.403 -33.239 -2.874 -1.074 -0.361 NAZ R1R 20 R1R CAY C15 C 0 1 N N N N N N -10.779 0.334 -34.263 -3.063 -2.510 -0.146 CAY R1R 21 R1R CBF C16 C 0 1 N N N N N N -9.425 -0.167 -34.690 -2.342 -3.291 -1.249 CBF R1R 22 R1R CBG C17 C 0 1 N N N N N N -8.925 -1.254 -33.740 -0.841 -3.003 -1.173 CBG R1R 23 R1R CAX C18 C 0 1 N N N N N N -11.794 -0.731 -33.829 -2.480 -2.906 1.213 CAX R1R 24 R1R NAV N4 N 0 1 N N N N N N -10.014 -2.138 -33.307 -0.331 -3.400 0.146 NAV R1R 25 R1R CBH C19 C 0 1 Y N N N N N -10.979 -2.919 -31.261 1.647 -2.501 1.197 CBH R1R 26 R1R CBI C20 C 0 1 Y N N N N N -10.838 -3.596 -30.055 3.021 -2.374 1.249 CBI R1R 27 R1R NAO N5 N 0 1 N N N N N N -8.266 -5.579 -28.343 5.659 -1.497 0.708 NAO R1R 28 R1R C2 C21 C 0 1 Y N N N N N -8.052 -6.709 -29.002 6.887 -0.981 0.330 C2 R1R 29 R1R F5 F1 F 0 1 N N N N N N -7.371 -10.132 -30.986 10.469 0.505 -0.781 F5 R1R 30 R1R NAD N6 N 0 1 N N N N N N -9.975 -9.033 -30.893 8.663 2.112 0.621 NAD R1R 31 R1R OAL O3 O 0 1 N N N N N N -9.123 -10.105 -32.702 6.896 2.554 1.936 OAL R1R 32 R1R OAJ O4 O 0 1 N N N N N N -11.369 -10.100 -32.267 8.450 4.133 1.572 OAJ R1R 33 R1R CAE C22 C 0 1 N N S N N N -11.367 -8.859 -30.400 9.846 2.854 0.159 CAE R1R 34 R1R CAF C23 C 0 1 N N N N N N -11.944 -7.447 -30.753 9.840 2.980 -1.366 CAF R1R 35 R1R CAH C24 C 0 1 N N N N N N -11.844 -7.110 -32.254 8.582 3.728 -1.811 CAH R1R 36 R1R CAG C25 C 0 1 N N N N N N -13.394 -7.331 -30.304 11.080 3.754 -1.819 CAG R1R 37 R1R H1 H1 H 0 1 N N N N N N -7.584 -4.452 -30.288 3.851 -4.305 -1.392 H1 R1R 38 R1R H2 H2 H 0 1 N N N N N N -13.153 -9.741 -31.297 9.610 5.016 0.057 H2 R1R 39 R1R H3 H3 H 0 1 N N N N N N -12.060 -10.928 -30.509 10.530 4.442 1.482 H3 R1R 40 R1R H4 H4 H 0 1 N N N N N N -9.555 -4.335 -26.328 6.955 -3.716 1.491 H4 R1R 41 R1R H5 H5 H 0 1 N N N N N N -8.815 -3.071 -27.367 5.443 -3.558 2.417 H5 R1R 42 R1R H6 H6 H 0 1 N N N N N N -10.598 -3.283 -27.343 5.612 -4.848 1.202 H6 R1R 43 R1R H7 H7 H 0 1 N N N N N N -11.955 -2.895 -33.770 -0.800 -1.566 1.055 H7 R1R 44 R1R H8 H8 H 0 1 N N N N N N -11.037 -2.255 -35.176 -0.554 -2.923 2.179 H8 R1R 45 R1R H9 H9 H 0 1 N N N N N N -10.364 -5.529 -28.357 5.739 -3.141 -0.592 H9 R1R 46 R1R H10 H10 H 0 1 N N N N N N -7.824 -3.272 -32.431 1.403 -4.535 -1.496 H10 R1R 47 R1R H11 H11 H 0 1 N N N N N N -5.576 -8.819 -29.774 9.604 -1.935 -1.250 H11 R1R 48 R1R H12 H12 H 0 1 N N N N N N -9.622 4.016 -31.619 -6.331 1.548 -0.887 H12 R1R 49 R1R H13 H13 H 0 1 N N N N N N -8.129 3.030 -31.779 -6.867 0.069 -1.721 H13 R1R 50 R1R H15 H15 H 0 1 N N N N N N -8.146 3.127 -34.114 -5.250 0.167 0.866 H15 R1R 51 R1R H16 H16 H 0 1 N N N N N N -8.931 4.742 -34.133 -5.786 -1.311 0.032 H16 R1R 52 R1R H17 H17 H 0 1 N N N N N N -11.429 1.376 -32.631 -2.076 -0.634 -0.027 H17 R1R 53 R1R H18 H18 H 0 1 N N N N N N -11.216 0.816 -35.150 -4.127 -2.745 -0.168 H18 R1R 54 R1R H19 H19 H 0 1 N N N N N N -9.498 -0.582 -35.706 -2.515 -4.359 -1.111 H19 R1R 55 R1R H20 H20 H 0 1 N N N N N N -8.713 0.671 -34.686 -2.723 -2.983 -2.222 H20 R1R 56 R1R H21 H21 H 0 1 N N N N N N -8.161 -1.855 -34.256 -0.323 -3.569 -1.948 H21 R1R 57 R1R H22 H22 H 0 1 N N N N N N -8.480 -0.777 -32.855 -0.668 -1.938 -1.324 H22 R1R 58 R1R H23 H23 H 0 1 N N N N N N -11.991 -0.627 -32.752 -2.655 -3.967 1.389 H23 R1R 59 R1R H24 H24 H 0 1 N N N N N N -12.730 -0.589 -34.388 -2.959 -2.322 1.999 H24 R1R 60 R1R H25 H25 H 0 1 N N N N N N -11.931 -2.481 -31.521 1.029 -1.991 1.922 H25 R1R 61 R1R H26 H26 H 0 1 N N N N N N -11.687 -3.688 -29.394 3.479 -1.774 2.021 H26 R1R 62 R1R H27 H27 H 0 1 N N N N N N -8.160 -5.798 -27.373 5.028 -0.942 1.193 H27 R1R 63 R1R H28 H28 H 0 1 N N N N N N -11.406 -9.003 -29.310 10.760 2.369 0.500 H28 R1R 64 R1R H29 H29 H 0 1 N N N N N N -11.355 -6.700 -30.200 9.849 1.986 -1.813 H29 R1R 65 R1R H30 H30 H 0 1 N N N N N N -12.264 -6.110 -32.435 8.573 4.722 -1.365 H30 R1R 66 R1R H31 H31 H 0 1 N N N N N N -10.789 -7.125 -32.564 8.577 3.817 -2.898 H31 R1R 67 R1R H32 H32 H 0 1 N N N N N N -12.407 -7.855 -32.835 7.698 3.177 -1.488 H32 R1R 68 R1R H33 H33 H 0 1 N N N N N N -13.467 -7.571 -29.233 11.977 3.221 -1.502 H33 R1R 69 R1R H34 H34 H 0 1 N N N N N N -13.749 -6.304 -30.474 11.075 3.843 -2.905 H34 R1R 70 R1R H35 H35 H 0 1 N N N N N N -14.014 -8.034 -30.880 11.071 4.748 -1.373 H35 R1R 71 R1R SCA S2 S 0 1 N Y N N N N -7.691 5.399 -32.218 -8.094 0.436 0.317 SCA R1R 72 R1R CCB C26 C 0 1 N Y N N N N ? ? ? -9.322 1.401 -0.605 CCB R1R 73 R1R CCC C27 C 0 1 N Y N N N N ? ? ? -10.637 1.436 0.177 CCC R1R 74 R1R CCF C28 C 0 1 N Y N N N N ? ? ? -11.632 2.351 -0.538 CCF R1R 75 R1R CCD C29 C 0 1 N Y N N N N ? ? ? -11.207 0.044 0.263 CCD R1R 76 R1R OCE O5 O 0 1 N Y N N N N ? ? ? -11.280 -0.514 1.332 OCE R1R 77 R1R NCG N7 N 1 1 N Y N N N N ? ? ? -12.827 2.523 0.298 NCG R1R 78 R1R CCH C30 C 0 1 N Y N N N N ? ? ? -12.428 2.987 1.633 CCH R1R 79 R1R CCI C31 C 0 1 N Y N N N N ? ? ? -13.718 3.515 -0.319 CCI R1R 80 R1R CCJ C32 C 0 1 N Y N N N N ? ? ? -13.531 1.239 0.416 CCJ R1R 81 R1R HB2 H14 H 0 1 N Y N N N N ? ? ? -8.955 2.418 -0.744 HB2 R1R 82 R1R HB1 H36 H 0 1 N Y N N N N ? ? ? -9.491 0.939 -1.578 HB1 R1R 83 R1R HC1 H37 H 0 1 N Y N N N N ? ? ? -10.451 1.815 1.182 HC1 R1R 84 R1R HF2 H38 H 0 1 N Y N N N N ? ? ? -11.170 3.323 -0.715 HF2 R1R 85 R1R HF1 H39 H 0 1 N Y N N N N ? ? ? -11.916 1.905 -1.491 HF1 R1R 86 R1R HD1 H40 H 0 1 N Y N N N N ? ? ? -11.550 -0.455 -0.631 HD1 R1R 87 R1R HH1 H41 H 0 1 N Y N N N N ? ? ? -11.906 3.940 1.546 HH1 R1R 88 R1R HH2 H42 H 0 1 N Y N N N N ? ? ? -13.315 3.115 2.254 HH2 R1R 89 R1R HH3 H43 H 0 1 N Y N N N N ? ? ? -11.767 2.251 2.091 HH3 R1R 90 R1R HI1 H44 H 0 1 N Y N N N N ? ? ? -14.014 3.171 -1.310 HI1 R1R 91 R1R HI2 H45 H 0 1 N Y N N N N ? ? ? -14.605 3.643 0.301 HI2 R1R 92 R1R HI3 H46 H 0 1 N Y N N N N ? ? ? -13.196 4.468 -0.407 HI3 R1R 93 R1R HJ1 H47 H 0 1 N Y N N N N ? ? ? -13.055 0.633 1.186 HJ1 R1R 94 R1R HJ2 H48 H 0 1 N Y N N N N ? ? ? -14.572 1.419 0.687 HJ2 R1R 95 R1R HJ3 H49 H 0 1 N Y N N N N ? ? ? -13.490 0.713 -0.538 HJ3 R1R 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R1R OBB SBA DOUB N N 1 R1R CBF CAY SING N N 2 R1R CBF CBG SING N N 3 R1R CAY CAX SING N N 4 R1R CAY NAZ SING N N 5 R1R CAW CAX SING N N 6 R1R CAW NAV SING N N 7 R1R SBA CBC SING N N 8 R1R SBA OBE DOUB N N 9 R1R SBA NAZ SING N N 10 R1R CBG NAV SING N N 11 R1R CBC CBD SING N N 12 R1R NAV CAU SING N N 13 R1R OAL CAK DOUB N N 14 R1R OAJ CAK SING N N 15 R1R OAJ CAI SING N N 16 R1R CAH CAF SING N N 17 R1R CAU CAT DOUB Y N 18 R1R CAU CBH SING Y N 19 R1R CAK NAD SING N N 20 R1R CAT CAS SING Y N 21 R1R CBH CBI DOUB Y N 22 R1R CAI CAE SING N N 23 R1R F5 C5 SING N N 24 R1R NAD CAE SING N N 25 R1R NAD C4 SING N N 26 R1R CAF CAE SING N N 27 R1R CAF CAG SING N N 28 R1R CAS CAR DOUB Y N 29 R1R C5 C4 DOUB Y N 30 R1R C5 C6 SING Y N 31 R1R C4 N3 SING Y N 32 R1R CBI CAR SING Y N 33 R1R C6 N1 DOUB Y N 34 R1R CAR CAP SING N N 35 R1R N3 C2 DOUB Y N 36 R1R N1 C2 SING Y N 37 R1R C2 NAO SING N N 38 R1R CAP NAO SING N N 39 R1R CAP CAQ SING N N 40 R1R CAS H1 SING N N 41 R1R CAI H2 SING N N 42 R1R CAI H3 SING N N 43 R1R CAQ H4 SING N N 44 R1R CAQ H5 SING N N 45 R1R CAQ H6 SING N N 46 R1R CAW H7 SING N N 47 R1R CAW H8 SING N N 48 R1R CAP H9 SING N N 49 R1R CAT H10 SING N N 50 R1R C6 H11 SING N N 51 R1R CBD H12 SING N N 52 R1R CBD H13 SING N N 53 R1R CBC H15 SING N N 54 R1R CBC H16 SING N N 55 R1R NAZ H17 SING N N 56 R1R CAY H18 SING N N 57 R1R CBF H19 SING N N 58 R1R CBF H20 SING N N 59 R1R CBG H21 SING N N 60 R1R CBG H22 SING N N 61 R1R CAX H23 SING N N 62 R1R CAX H24 SING N N 63 R1R CBH H25 SING N N 64 R1R CBI H26 SING N N 65 R1R NAO H27 SING N N 66 R1R CAE H28 SING N N 67 R1R CAF H29 SING N N 68 R1R CAH H30 SING N N 69 R1R CAH H31 SING N N 70 R1R CAH H32 SING N N 71 R1R CAG H33 SING N N 72 R1R CAG H34 SING N N 73 R1R CAG H35 SING N N 74 R1R CBD SCA SING N N 75 R1R SCA CCB SING N N 76 R1R CCB CCC SING N N 77 R1R CCC CCF SING N N 78 R1R CCC CCD SING N N 79 R1R CCD OCE DOUB N N 80 R1R CCF NCG SING N N 81 R1R NCG CCH SING N N 82 R1R NCG CCI SING N N 83 R1R NCG CCJ SING N N 84 R1R CCB HB2 SING N N 85 R1R CCB HB1 SING N N 86 R1R CCC HC1 SING N N 87 R1R CCF HF2 SING N N 88 R1R CCF HF1 SING N N 89 R1R CCD HD1 SING N N 90 R1R CCH HH1 SING N N 91 R1R CCH HH2 SING N N 92 R1R CCH HH3 SING N N 93 R1R CCI HI1 SING N N 94 R1R CCI HI2 SING N N 95 R1R CCI HI3 SING N N 96 R1R CCJ HJ1 SING N N 97 R1R CCJ HJ2 SING N N 98 R1R CCJ HJ3 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R1R InChI InChI 1.06 "InChI=1S/C32H49FN7O5S2/c1-22(2)29-20-45-32(42)39(29)30-28(33)17-34-31(36-30)35-23(3)25-7-9-27(10-8-25)38-13-11-26(12-14-38)37-47(43,44)16-15-46-21-24(19-41)18-40(4,5)6/h7-10,17,19,22-24,26,29,37H,11-16,18,20-21H2,1-6H3,(H,34,35,36)/q+1/t23-,24?,29+/m0/s1" R1R InChIKey InChI 1.06 LCIIBZXZTLMNNC-QFTSJRPJSA-N R1R SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H]1COC(=O)N1c2nc(N[C@@H](C)c3ccc(cc3)N4CCC(CC4)N[S](=O)(=O)CCSCC(C[N+](C)(C)C)C=O)ncc2F" R1R SMILES CACTVS 3.385 "CC(C)[CH]1COC(=O)N1c2nc(N[CH](C)c3ccc(cc3)N4CCC(CC4)N[S](=O)(=O)CCSCC(C[N+](C)(C)C)C=O)ncc2F" R1R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cc1)N2CCC(CC2)NS(=O)(=O)CCSCC(C[N+](C)(C)C)C=O)Nc3ncc(c(n3)N4[C@H](COC4=O)C(C)C)F" R1R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1COC(=O)N1c2c(cnc(n2)NC(C)c3ccc(cc3)N4CCC(CC4)NS(=O)(=O)CCSCC(C[N+](C)(C)C)C=O)F" # _pdbx_chem_comp_identifier.comp_id R1R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[2-[2-[[1-[4-[(1~{S})-1-[[5-fluoranyl-4-[(4~{S})-2-oxidanylidene-4-propan-2-yl-1,3-oxazolidin-3-yl]pyrimidin-2-yl]amino]ethyl]phenyl]piperidin-4-yl]sulfamoyl]ethylsulfanylmethyl]-3-oxidanylidene-propyl]-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R1R "Create component" 2022-11-22 PDBE R1R "Modify leaving atom flag" 2022-12-30 PDBE R1R "Initial release" 2023-05-24 RCSB R1R "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R1R _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CBD _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #