data_R28 # _chem_comp.id R28 _chem_comp.name "propan-2-yl 2-[[4-[2-(dimethylamino)ethyl-methyl-amino]-2-methoxy-5-(propanoylamino)phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H41 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Mobocertinib, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.712 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7A6K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R28 C10 C1 C 0 1 Y N N N N N 4.623 11.511 26.151 2.964 -0.361 0.306 C10 R28 1 R28 C15 C2 C 0 1 Y N N N N N 5.229 15.536 27.197 -2.002 0.133 0.140 C15 R28 2 R28 C20 C3 C 0 1 N N N N N N 9.464 15.045 30.469 -2.644 4.713 2.278 C20 R28 3 R28 C22 C4 C 0 1 Y N N N N N 5.870 17.710 26.399 -4.252 -0.370 -0.553 C22 R28 4 R28 C24 C5 C 0 1 N N N N N N 6.701 19.521 25.027 -5.886 -0.154 -2.250 C24 R28 5 R28 C26 C6 C 0 1 N N N N N N 5.764 20.620 27.457 -7.901 0.036 -0.121 C26 R28 6 R28 C28 C7 C 0 1 N N N N N N 5.095 22.858 27.787 -10.136 0.105 0.808 C28 R28 7 R28 C01 C8 C 0 1 N N N N N N 8.810 8.712 26.680 7.291 -0.575 2.808 C01 R28 8 R28 C03 C9 C 0 1 Y N N N N N 8.330 11.054 25.919 6.308 -1.906 0.906 C03 R28 9 R28 C04 C10 C 0 1 Y N N N N N 7.216 11.845 25.758 5.109 -1.887 0.175 C04 R28 10 R28 C05 C11 C 0 1 Y N N N N N 7.365 13.172 25.284 4.900 -2.809 -0.848 C05 R28 11 R28 C06 C12 C 0 1 Y N N N N N 8.633 13.672 24.982 5.874 -3.739 -1.137 C06 R28 12 R28 C07 C13 C 0 1 Y N N N N N 9.762 12.865 25.145 7.059 -3.760 -0.416 C07 R28 13 R28 C08 C14 C 0 1 Y N N N N N 9.621 11.564 25.610 7.277 -2.857 0.602 C08 R28 14 R28 C09 C15 C 0 1 Y N N N N N 6.100 11.052 26.136 4.309 -0.785 0.738 C09 R28 15 R28 C12 C16 C 0 1 Y N N N N N 3.147 13.271 26.480 0.704 -0.778 0.095 C12 R28 16 R28 C14 C17 C 0 1 Y N N N N N 3.955 15.710 26.667 -1.666 -1.207 0.010 C14 R28 17 R28 C16 C18 C 0 1 Y N N N N N 6.193 16.536 27.059 -3.294 0.553 -0.138 C16 R28 18 R28 C18 C19 C 0 1 N N N N N N 8.056 15.279 28.385 -3.039 2.660 0.944 C18 R28 19 R28 C19 C20 C 0 1 N N N N N N 9.448 15.420 28.988 -3.477 4.086 1.158 C19 R28 20 R28 C25 C21 C 0 1 N N N N N N 6.931 19.631 27.423 -6.530 -0.624 0.036 C25 R28 21 R28 C29 C22 C 0 1 N N N N N N 7.113 22.080 28.770 -9.098 -2.025 0.309 C29 R28 22 R28 C30 C23 C 0 1 Y N N N N N 4.597 17.883 25.875 -3.913 -1.709 -0.689 C30 R28 23 R28 C31 C24 C 0 1 Y N N N N N 3.638 16.885 26.016 -2.624 -2.128 -0.405 C31 R28 24 R28 C33 C25 C 0 1 N N N N N N 2.047 18.351 25.096 -3.321 -4.330 -0.975 C33 R28 25 R28 C35 C26 C 0 1 Y N N N N N 2.260 11.228 25.980 1.471 1.245 -0.704 C35 R28 26 R28 C36 C27 C 0 1 Y N N N N N 3.537 10.666 25.910 2.769 0.899 -0.310 C36 R28 27 R28 C37 C28 C 0 1 N N N N N N 3.670 9.177 25.574 3.896 1.817 -0.529 C37 R28 28 R28 C39 C29 C 0 1 N N N N N N 4.514 7.381 24.307 4.869 3.817 -1.399 C39 R28 29 R28 C40 C30 C 0 1 N N N N N N 5.916 6.779 24.411 5.600 3.428 -2.685 C40 R28 30 R28 C41 C31 C 0 1 N N N N N N 3.934 7.274 22.900 4.413 5.274 -1.492 C41 R28 31 R28 C43 C32 C 0 1 Y N N N N N 6.600 9.817 26.528 5.055 -0.236 1.736 C43 R28 32 R28 N02 N1 N 0 1 Y N N N N N 7.925 9.831 26.384 6.239 -0.895 1.840 N02 R28 33 R28 N11 N2 N 0 1 Y N N N N N 4.377 12.783 26.433 1.913 -1.157 0.483 N11 R28 34 R28 N13 N3 N 0 1 N N N N N N 2.922 14.680 26.799 -0.360 -1.633 0.296 N13 R28 35 R28 N17 N4 N 0 1 N N N N N N 7.539 16.384 27.589 -3.637 1.906 0.000 N17 R28 36 R28 N23 N5 N 0 1 N N N N N N 6.881 18.754 26.253 -5.558 0.053 -0.834 N23 R28 37 R28 N27 N6 N 0 1 N N N N N N 6.240 21.984 27.613 -8.872 -0.641 0.749 N27 R28 38 R28 N34 N7 N 0 1 Y N N N N N 2.094 12.513 26.257 0.484 0.398 -0.481 N34 R28 39 R28 O21 O1 O 0 1 N N N N N N 7.440 14.281 28.570 -2.149 2.191 1.621 O21 R28 40 R28 O32 O2 O 0 1 N N N N N N 2.348 17.045 25.496 -2.291 -3.441 -0.539 O32 R28 41 R28 O38 O3 O 0 1 N N N N N N 4.604 8.741 24.626 3.711 2.958 -1.222 O38 R28 42 R28 O42 O4 O 0 1 N N N N N N 2.969 8.391 26.116 4.995 1.547 -0.084 O42 R28 43 R28 H1 H1 H 0 1 N N N N N N 5.474 14.622 27.718 -1.259 0.847 0.462 H1 R28 44 R28 H2 H2 H 0 1 N N N N N N 10.483 15.160 30.866 -2.960 5.744 2.433 H2 R28 45 R28 H3 H3 H 0 1 N N N N N N 8.779 15.705 31.022 -2.789 4.146 3.198 H3 R28 46 R28 H4 H4 H 0 1 N N N N N N 9.141 14.000 30.586 -1.590 4.694 2.002 H4 R28 47 R28 H5 H5 H 0 1 N N N N N N 7.482 20.293 24.959 -5.803 -1.214 -2.491 H5 R28 48 R28 H6 H6 H 0 1 N N N N N N 6.774 18.848 24.160 -6.905 0.183 -2.441 H6 R28 49 R28 H7 H7 H 0 1 N N N N N N 5.711 20.000 25.037 -5.193 0.415 -2.871 H7 R28 50 R28 H8 H8 H 0 1 N N N N N N 5.199 20.542 26.516 -7.833 1.087 0.160 H8 R28 51 R28 H9 H9 H 0 1 N N N N N N 5.106 20.370 28.302 -8.226 -0.043 -1.158 H9 R28 52 R28 H10 H10 H 0 1 N N N N N N 5.440 23.896 27.907 -10.559 0.183 -0.194 H10 R28 53 R28 H11 H11 H 0 1 N N N N N N 4.443 22.788 26.904 -10.837 -0.419 1.458 H11 R28 54 R28 H12 H12 H 0 1 N N N N N N 4.534 22.553 28.682 -9.951 1.104 1.203 H12 R28 55 R28 H13 H13 H 0 1 N N N N N N 8.215 7.858 27.037 7.974 0.156 2.374 H13 R28 56 R28 H14 H14 H 0 1 N N N N N N 9.354 8.424 25.769 6.841 -0.161 3.711 H14 R28 57 R28 H15 H15 H 0 1 N N N N N N 9.529 9.009 27.458 7.841 -1.482 3.059 H15 R28 58 R28 H16 H16 H 0 1 N N N N N N 6.495 13.799 25.156 3.978 -2.796 -1.411 H16 R28 59 R28 H17 H17 H 0 1 N N N N N N 8.741 14.684 24.622 5.717 -4.453 -1.932 H17 R28 60 R28 H18 H18 H 0 1 N N N N N N 10.742 13.252 24.910 7.816 -4.494 -0.651 H18 R28 61 R28 H19 H19 H 0 1 N N N N N N 10.493 10.939 25.737 8.203 -2.881 1.157 H19 R28 62 R28 H20 H20 H 0 1 N N N N N N 10.140 14.759 28.446 -4.531 4.106 1.434 H20 R28 63 R28 H21 H21 H 0 1 N N N N N N 9.779 16.464 28.881 -3.332 4.653 0.238 H21 R28 64 R28 H22 H22 H 0 1 N N N N N N 6.896 19.012 28.331 -6.205 -0.545 1.074 H22 R28 65 R28 H23 H23 H 0 1 N N N N N N 7.874 20.197 27.401 -6.598 -1.675 -0.245 H23 R28 66 R28 H24 H24 H 0 1 N N N N N N 7.467 23.116 28.878 -8.157 -2.574 0.342 H24 R28 67 R28 H25 H25 H 0 1 N N N N N N 6.558 21.786 29.673 -9.821 -2.503 0.970 H25 R28 68 R28 H26 H26 H 0 1 N N N N N N 7.975 21.410 28.635 -9.483 -2.024 -0.711 H26 R28 69 R28 H27 H27 H 0 1 N N N N N N 4.349 18.797 25.355 -4.655 -2.424 -1.010 H27 R28 70 R28 H28 H28 H 0 1 N N N N N N 1.021 18.387 24.702 -3.680 -4.018 -1.956 H28 R28 71 R28 H29 H29 H 0 1 N N N N N N 2.133 19.028 25.959 -2.924 -5.343 -1.039 H29 R28 72 R28 H30 H30 H 0 1 N N N N N N 2.752 18.666 24.312 -4.146 -4.308 -0.262 H30 R28 73 R28 H31 H31 H 0 1 N N N N N N 1.395 10.606 25.806 1.278 2.199 -1.174 H31 R28 74 R28 H32 H32 H 0 1 N N N N N N 3.848 6.859 25.010 5.541 3.700 -0.549 H32 R28 75 R28 H33 H33 H 0 1 N N N N N N 6.285 6.883 25.442 5.925 2.389 -2.619 H33 R28 76 R28 H34 H34 H 0 1 N N N N N N 5.878 5.713 24.141 4.927 3.545 -3.535 H34 R28 77 R28 H35 H35 H 0 1 N N N N N N 6.594 7.308 23.725 6.469 4.072 -2.818 H35 R28 78 R28 H36 H36 H 0 1 N N N N N N 2.929 7.720 22.882 3.740 5.391 -2.342 H36 R28 79 R28 H37 H37 H 0 1 N N N N N N 4.585 7.809 22.193 3.892 5.552 -0.576 H37 R28 80 R28 H38 H38 H 0 1 N N N N N N 3.870 6.215 22.610 5.282 5.919 -1.625 H38 R28 81 R28 H39 H39 H 0 1 N N N N N N 6.014 8.985 26.889 4.751 0.598 2.351 H39 R28 82 R28 H40 H40 H 0 1 N N N N N N 2.017 14.954 27.124 -0.206 -2.528 0.636 H40 R28 83 R28 H41 H41 H 0 1 N N N N N N 8.182 17.122 27.384 -4.305 2.300 -0.584 H41 R28 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R28 C41 C39 SING N N 1 R28 C39 C40 SING N N 2 R28 C39 O38 SING N N 3 R28 O38 C37 SING N N 4 R28 C06 C07 DOUB Y N 5 R28 C06 C05 SING Y N 6 R28 C24 N23 SING N N 7 R28 C33 O32 SING N N 8 R28 C07 C08 SING Y N 9 R28 C05 C04 DOUB Y N 10 R28 O32 C31 SING N N 11 R28 C37 C36 SING N N 12 R28 C37 O42 DOUB N N 13 R28 C08 C03 DOUB Y N 14 R28 C04 C03 SING Y N 15 R28 C04 C09 SING Y N 16 R28 C30 C31 DOUB Y N 17 R28 C30 C22 SING Y N 18 R28 C36 C35 DOUB Y N 19 R28 C36 C10 SING Y N 20 R28 C03 N02 SING Y N 21 R28 C35 N34 SING Y N 22 R28 C31 C14 SING Y N 23 R28 C09 C10 SING N N 24 R28 C09 C43 DOUB Y N 25 R28 C10 N11 DOUB Y N 26 R28 N23 C22 SING N N 27 R28 N23 C25 SING N N 28 R28 N34 C12 DOUB Y N 29 R28 N02 C43 SING Y N 30 R28 N02 C01 SING N N 31 R28 C22 C16 DOUB Y N 32 R28 N11 C12 SING Y N 33 R28 C12 N13 SING N N 34 R28 C14 N13 SING N N 35 R28 C14 C15 DOUB Y N 36 R28 C16 C15 SING Y N 37 R28 C16 N17 SING N N 38 R28 C25 C26 SING N N 39 R28 C26 N27 SING N N 40 R28 N17 C18 SING N N 41 R28 N27 C28 SING N N 42 R28 N27 C29 SING N N 43 R28 C18 O21 DOUB N N 44 R28 C18 C19 SING N N 45 R28 C19 C20 SING N N 46 R28 C15 H1 SING N N 47 R28 C20 H2 SING N N 48 R28 C20 H3 SING N N 49 R28 C20 H4 SING N N 50 R28 C24 H5 SING N N 51 R28 C24 H6 SING N N 52 R28 C24 H7 SING N N 53 R28 C26 H8 SING N N 54 R28 C26 H9 SING N N 55 R28 C28 H10 SING N N 56 R28 C28 H11 SING N N 57 R28 C28 H12 SING N N 58 R28 C01 H13 SING N N 59 R28 C01 H14 SING N N 60 R28 C01 H15 SING N N 61 R28 C05 H16 SING N N 62 R28 C06 H17 SING N N 63 R28 C07 H18 SING N N 64 R28 C08 H19 SING N N 65 R28 C19 H20 SING N N 66 R28 C19 H21 SING N N 67 R28 C25 H22 SING N N 68 R28 C25 H23 SING N N 69 R28 C29 H24 SING N N 70 R28 C29 H25 SING N N 71 R28 C29 H26 SING N N 72 R28 C30 H27 SING N N 73 R28 C33 H28 SING N N 74 R28 C33 H29 SING N N 75 R28 C33 H30 SING N N 76 R28 C35 H31 SING N N 77 R28 C39 H32 SING N N 78 R28 C40 H33 SING N N 79 R28 C40 H34 SING N N 80 R28 C40 H35 SING N N 81 R28 C41 H36 SING N N 82 R28 C41 H37 SING N N 83 R28 C41 H38 SING N N 84 R28 C43 H39 SING N N 85 R28 N13 H40 SING N N 86 R28 N17 H41 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R28 InChI InChI 1.06 "InChI=1S/C32H41N7O4/c1-9-29(40)34-24-16-25(28(42-8)17-27(24)38(6)15-14-37(4)5)35-32-33-18-22(31(41)43-20(2)3)30(36-32)23-19-39(7)26-13-11-10-12-21(23)26/h10-13,16-20H,9,14-15H2,1-8H3,(H,34,40)(H,33,35,36)" R28 InChIKey InChI 1.06 CINKQTDSFCVDKO-UHFFFAOYSA-N R28 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)c(OC)cc1N(C)CCN(C)C" R28 SMILES CACTVS 3.385 "CCC(=O)Nc1cc(Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)c(OC)cc1N(C)CCN(C)C" R28 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2ncc(c(n2)c3cn(c4c3cccc4)C)C(=O)OC(C)C" R28 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2ncc(c(n2)c3cn(c4c3cccc4)C)C(=O)OC(C)C" # _pdbx_chem_comp_identifier.comp_id R28 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "propan-2-yl 2-[[4-[2-(dimethylamino)ethyl-methyl-amino]-2-methoxy-5-(propanoylamino)phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R28 _pdbx_chem_comp_synonyms.name "Mobocertinib, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R28 "Create component" 2020-08-26 PDBE R28 "Initial release" 2022-02-23 RCSB R28 "Modify synonyms" 2022-09-28 PDBE R28 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R28 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C20 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #