data_R2A # _chem_comp.id R2A _chem_comp.name "(2-{[3-(4-{2-[(3-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}benzene-1-carbonyl)amino]ethyl}piperazine-1-carbonyl)phenyl]ethynyl}-5-methyl-1-benzofuran-3-yl)acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C46 H39 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-24 _chem_comp.pdbx_modified_date 2021-01-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 761.817 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R2A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VLH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R2A C10 C1 C 0 1 Y N N 7.020 20.865 -29.426 -7.070 -2.374 -0.098 C10 R2A 1 R2A C13 C2 C 0 1 N N N 6.633 24.135 -30.496 -9.905 -3.071 1.537 C13 R2A 2 R2A C17 C3 C 0 1 Y N N 8.849 21.101 -32.517 -7.642 -5.964 0.061 C17 R2A 3 R2A C20 C4 C 0 1 Y N N 10.312 19.240 -31.893 -6.437 -6.503 -1.932 C20 R2A 4 R2A C21 C5 C 0 1 Y N N 9.668 19.070 -30.666 -6.131 -5.174 -2.140 C21 R2A 5 R2A C22 C6 C 0 1 Y N N 8.619 19.950 -30.404 -6.578 -4.213 -1.243 C22 R2A 6 R2A C24 C7 C 0 1 Y N N 4.472 20.597 -25.281 -6.580 2.486 0.117 C24 R2A 7 R2A C26 C8 C 0 1 N N N 4.051 18.669 -20.730 -4.140 5.530 -1.852 C26 R2A 8 R2A C02 C9 C 0 1 N N N 3.725 19.588 -23.122 -5.968 4.849 -0.366 C02 R2A 9 R2A C03 C10 C 0 1 Y N N 3.712 20.737 -24.139 -6.637 3.831 0.473 C03 R2A 10 R2A C04 C11 C 0 1 Y N N 2.999 21.921 -23.979 -7.329 4.218 1.624 C04 R2A 11 R2A C05 C12 C 0 1 Y N N 3.059 22.928 -24.953 -7.955 3.270 2.409 C05 R2A 12 R2A C06 C13 C 0 1 Y N N 3.819 22.766 -26.091 -7.904 1.934 2.063 C06 R2A 13 R2A C07 C14 C 0 1 Y N N 4.519 21.584 -26.246 -7.220 1.533 0.911 C07 R2A 14 R2A C08 C15 C 0 1 N N N 5.342 21.324 -27.463 -7.167 0.147 0.553 C08 R2A 15 R2A C09 C16 C 0 1 N N N 6.039 21.129 -28.352 -7.123 -0.989 0.260 C09 R2A 16 R2A C11 C17 C 0 1 Y N N 7.131 21.591 -30.638 -7.650 -3.386 0.602 C11 R2A 17 R2A C12 C18 C 0 1 N N N 6.295 22.770 -31.150 -8.449 -3.267 1.874 C12 R2A 18 R2A C16 C19 C 0 1 Y N N 8.233 20.886 -31.267 -7.342 -4.614 -0.132 C16 R2A 19 R2A C18 C20 C 0 1 Y N N 9.920 20.238 -32.803 -7.191 -6.893 -0.835 C18 R2A 20 R2A C19 C21 C 0 1 N N N 10.710 20.336 -34.088 -7.514 -8.351 -0.628 C19 R2A 21 R2A C27 C22 C 0 1 N N N 4.767 18.883 -19.378 -2.709 5.808 -1.381 C27 R2A 22 R2A C29 C23 C 0 1 N N N 4.671 20.305 -17.351 -0.572 4.763 -0.928 C29 R2A 23 R2A C30 C24 C 0 1 N N N 4.025 21.531 -16.622 0.183 3.435 -1.006 C30 R2A 24 R2A C32 C25 C 0 1 N N N 3.140 21.099 -14.156 2.466 2.627 -0.736 C32 R2A 25 R2A C33 C26 C 0 1 Y N N 1.928 20.921 -13.168 3.898 2.857 -0.449 C33 R2A 26 R2A C34 C27 C 0 1 Y N N 2.020 20.064 -12.056 4.792 1.788 -0.462 C34 R2A 27 R2A C35 C28 C 0 1 Y N N 0.945 19.874 -11.165 6.142 2.014 -0.191 C35 R2A 28 R2A C36 C29 C 0 1 N N N 1.080 18.913 -9.957 7.069 0.922 -0.202 C36 R2A 29 R2A C37 C30 C 0 1 N N N 1.263 18.153 -9.048 7.829 0.027 -0.211 C37 R2A 30 R2A C38 C31 C 0 1 Y N N 1.649 17.156 -7.949 8.756 -1.064 -0.223 C38 R2A 31 R2A C39 C32 C 0 1 Y N N 0.893 16.713 -6.823 10.089 -0.962 0.026 C39 R2A 32 R2A C40 C33 C 0 1 N N N -0.548 17.076 -6.366 10.855 0.293 0.359 C40 R2A 33 R2A C41 C34 C 0 1 N N N -1.512 15.860 -6.351 10.869 0.492 1.852 C41 R2A 34 R2A C44 C35 C 0 1 Y N N 1.790 15.758 -6.155 10.629 -2.317 -0.093 C44 R2A 35 R2A C45 C36 C 0 1 Y N N 1.699 14.950 -4.988 11.902 -2.872 0.041 C45 R2A 36 R2A C46 C37 C 0 1 Y N N 2.768 14.129 -4.621 12.078 -4.216 -0.140 C46 R2A 37 R2A C47 C38 C 0 1 N N N 2.698 13.234 -3.403 13.452 -4.818 0.005 C47 R2A 38 R2A C48 C39 C 0 1 Y N N 3.924 14.104 -5.395 11.000 -5.029 -0.456 C48 R2A 39 R2A C49 C40 C 0 1 Y N N 4.025 14.895 -6.543 9.733 -4.499 -0.593 C49 R2A 40 R2A C50 C41 C 0 1 Y N N 2.949 15.724 -6.932 9.531 -3.137 -0.414 C50 R2A 41 R2A C52 C42 C 0 1 Y N N -0.254 20.559 -11.372 6.588 3.310 0.091 C52 R2A 42 R2A C53 C43 C 0 1 Y N N -0.363 21.427 -12.459 5.695 4.362 0.102 C53 R2A 43 R2A C54 C44 C 0 1 Y N N 0.713 21.613 -13.340 4.359 4.146 -0.171 C54 R2A 44 R2A C56 C45 C 0 1 N N N 5.061 21.151 -19.715 -2.615 3.711 -0.167 C56 R2A 45 R2A C57 C46 C 0 1 N N N 4.300 21.120 -21.053 -4.043 3.346 -0.589 C57 R2A 46 R2A N25 N1 N 0 1 N N N 4.029 19.802 -21.686 -4.765 4.585 -0.913 N25 R2A 47 R2A N28 N2 N 0 1 N N N 4.491 20.182 -18.820 -1.995 4.536 -1.212 N28 R2A 48 R2A N31 N3 N 0 1 N N N 2.956 21.327 -15.616 1.602 3.662 -0.723 N31 R2A 49 R2A O01 O1 O 0 1 N N N 3.532 18.478 -23.515 -6.503 5.922 -0.562 O01 R2A 50 R2A O14 O2 O 0 1 N N N 7.718 24.723 -30.760 -10.257 -3.032 0.382 O14 R2A 51 R2A O15 O3 O 0 1 N N N 5.826 24.705 -29.708 -10.810 -2.939 2.519 O15 R2A 52 R2A O23 O4 O 0 1 Y N N 7.912 19.917 -29.300 -6.442 -2.872 -1.182 O23 R2A 53 R2A O42 O5 O 0 1 N N N -2.088 15.457 -7.412 10.314 -0.303 2.573 O42 R2A 54 R2A O43 O6 O 0 1 N N N -1.749 15.226 -5.290 11.498 1.553 2.382 O43 R2A 55 R2A O51 O7 O 0 1 Y N N 2.808 16.557 -7.968 8.437 -2.350 -0.476 O51 R2A 56 R2A O55 O8 O 0 1 N N N 4.248 20.998 -13.697 2.067 1.506 -0.982 O55 R2A 57 R2A H171 H1 H 0 0 N N N 8.523 21.870 -33.202 -8.228 -6.273 0.914 H171 R2A 58 R2A H201 H2 H 0 0 N N N 11.133 18.588 -32.150 -6.087 -7.247 -2.632 H201 R2A 59 R2A H211 H3 H 0 0 N N N 9.964 18.305 -29.964 -5.544 -4.882 -2.998 H211 R2A 60 R2A H241 H4 H 0 0 N N N 5.045 19.693 -25.424 -6.047 2.182 -0.772 H241 R2A 61 R2A H261 H5 H 0 0 N N N 3.006 18.405 -20.510 -4.708 6.460 -1.868 H261 R2A 62 R2A H262 H6 H 0 0 N N N 4.545 17.824 -21.233 -4.118 5.096 -2.852 H262 R2A 63 R2A H041 H7 H 0 0 N N N 2.394 22.066 -23.096 -7.373 5.260 1.900 H041 R2A 64 R2A H051 H8 H 0 0 N N N 2.502 23.842 -24.809 -8.487 3.575 3.298 H051 R2A 65 R2A H061 H9 H 0 0 N N N 3.866 23.541 -26.841 -8.395 1.198 2.682 H061 R2A 66 R2A H121 H10 H 0 0 N N N 6.457 22.860 -32.234 -8.091 -2.413 2.449 H121 R2A 67 R2A H122 H11 H 0 0 N N N 5.235 22.549 -30.955 -8.332 -4.177 2.463 H122 R2A 68 R2A H193 H12 H 0 0 N N N 11.555 21.026 -33.948 -8.452 -8.590 -1.129 H193 R2A 69 R2A H192 H13 H 0 0 N N N 11.090 19.341 -34.361 -6.714 -8.963 -1.045 H192 R2A 70 R2A H191 H14 H 0 0 N N N 10.059 20.713 -34.891 -7.609 -8.554 0.438 H191 R2A 71 R2A H271 H15 H 0 0 N N N 4.426 18.113 -18.670 -2.194 6.419 -2.122 H271 R2A 72 R2A H272 H16 H 0 0 N N N 5.852 18.786 -19.532 -2.736 6.339 -0.428 H272 R2A 73 R2A H291 H17 H 0 0 N N N 4.251 19.397 -16.895 -0.464 5.184 0.071 H291 R2A 74 R2A H292 H18 H 0 0 N N N 5.753 20.345 -17.158 -0.162 5.458 -1.661 H292 R2A 75 R2A H302 H19 H 0 0 N N N 4.842 22.061 -16.111 -0.228 2.740 -0.273 H302 R2A 76 R2A H301 H20 H 0 0 N N N 3.602 22.177 -17.405 0.075 3.014 -2.006 H301 R2A 77 R2A H341 H21 H 0 0 N N N 2.945 19.535 -11.880 4.442 0.790 -0.681 H341 R2A 78 R2A H402 H22 H 0 0 N N N -0.497 17.494 -5.350 11.879 0.200 -0.005 H402 R2A 79 R2A H401 H23 H 0 0 N N N -0.952 17.833 -7.054 10.376 1.148 -0.118 H401 R2A 80 R2A H451 H24 H 0 0 N N N 0.803 14.971 -4.385 12.745 -2.243 0.287 H451 R2A 81 R2A H473 H25 H 0 0 N N N 3.077 13.778 -2.525 13.609 -5.120 1.040 H473 R2A 82 R2A H471 H26 H 0 0 N N N 1.654 12.936 -3.226 13.538 -5.688 -0.645 H471 R2A 83 R2A H472 H27 H 0 0 N N N 3.312 12.337 -3.572 14.204 -4.079 -0.275 H472 R2A 84 R2A H481 H28 H 0 0 N N N 4.749 13.469 -5.107 11.153 -6.089 -0.596 H481 R2A 85 R2A H491 H29 H 0 0 N N N 4.928 14.872 -7.135 8.901 -5.142 -0.840 H491 R2A 86 R2A H521 H30 H 0 0 N N N -1.087 20.419 -10.699 7.632 3.487 0.302 H521 R2A 87 R2A H531 H31 H 0 0 N N N -1.287 21.962 -12.624 6.044 5.360 0.322 H531 R2A 88 R2A H541 H32 H 0 0 N N N 0.608 22.300 -14.166 3.667 4.975 -0.166 H541 R2A 89 R2A H562 H33 H 0 0 N N N 6.120 20.911 -19.889 -2.644 4.270 0.768 H562 R2A 90 R2A H561 H34 H 0 0 N N N 4.981 22.154 -19.270 -2.033 2.800 -0.028 H561 R2A 91 R2A H571 H35 H 0 0 N N N 4.885 21.712 -21.773 -4.011 2.700 -1.466 H571 R2A 92 R2A H572 H36 H 0 0 N N N 3.327 21.605 -20.884 -4.545 2.830 0.229 H572 R2A 93 R2A H311 H38 H 0 0 N N N 2.014 21.344 -15.952 1.920 4.557 -0.526 H311 R2A 94 R2A H2 H39 H 0 1 N N N 6.191 25.535 -29.426 -11.731 -2.815 2.254 H2 R2A 95 R2A H3 H40 H 0 1 N N N -2.352 14.515 -5.473 11.480 1.638 3.345 H3 R2A 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R2A C19 C18 SING N N 1 R2A C18 C17 DOUB Y N 2 R2A C18 C20 SING Y N 3 R2A C17 C16 SING Y N 4 R2A C20 C21 DOUB Y N 5 R2A C16 C11 SING Y N 6 R2A C16 C22 DOUB Y N 7 R2A C12 C11 SING N N 8 R2A C12 C13 SING N N 9 R2A O14 C13 DOUB N N 10 R2A C21 C22 SING Y N 11 R2A C11 C10 DOUB Y N 12 R2A C13 O15 SING N N 13 R2A C22 O23 SING Y N 14 R2A C10 O23 SING Y N 15 R2A C10 C09 SING N N 16 R2A C09 C08 TRIP N N 17 R2A C08 C07 SING N N 18 R2A C07 C06 DOUB Y N 19 R2A C07 C24 SING Y N 20 R2A C06 C05 SING Y N 21 R2A C24 C03 DOUB Y N 22 R2A C05 C04 DOUB Y N 23 R2A C03 C04 SING Y N 24 R2A C03 C02 SING N N 25 R2A O01 C02 DOUB N N 26 R2A C02 N25 SING N N 27 R2A N25 C57 SING N N 28 R2A N25 C26 SING N N 29 R2A C57 C56 SING N N 30 R2A C26 C27 SING N N 31 R2A C56 N28 SING N N 32 R2A C27 N28 SING N N 33 R2A N28 C29 SING N N 34 R2A C29 C30 SING N N 35 R2A C30 N31 SING N N 36 R2A N31 C32 SING N N 37 R2A C32 O55 DOUB N N 38 R2A C32 C33 SING N N 39 R2A C54 C33 DOUB Y N 40 R2A C54 C53 SING Y N 41 R2A C33 C34 SING Y N 42 R2A C53 C52 DOUB Y N 43 R2A C34 C35 DOUB Y N 44 R2A C52 C35 SING Y N 45 R2A C35 C36 SING N N 46 R2A C36 C37 TRIP N N 47 R2A C37 C38 SING N N 48 R2A O51 C38 SING Y N 49 R2A O51 C50 SING Y N 50 R2A C38 C39 DOUB Y N 51 R2A O42 C41 DOUB N N 52 R2A C50 C49 DOUB Y N 53 R2A C50 C44 SING Y N 54 R2A C39 C40 SING N N 55 R2A C39 C44 SING Y N 56 R2A C49 C48 SING Y N 57 R2A C40 C41 SING N N 58 R2A C41 O43 SING N N 59 R2A C44 C45 DOUB Y N 60 R2A C48 C46 DOUB Y N 61 R2A C45 C46 SING Y N 62 R2A C46 C47 SING N N 63 R2A C17 H171 SING N N 64 R2A C20 H201 SING N N 65 R2A C21 H211 SING N N 66 R2A C24 H241 SING N N 67 R2A C26 H261 SING N N 68 R2A C26 H262 SING N N 69 R2A C04 H041 SING N N 70 R2A C05 H051 SING N N 71 R2A C06 H061 SING N N 72 R2A C12 H121 SING N N 73 R2A C12 H122 SING N N 74 R2A C19 H193 SING N N 75 R2A C19 H192 SING N N 76 R2A C19 H191 SING N N 77 R2A C27 H271 SING N N 78 R2A C27 H272 SING N N 79 R2A C29 H291 SING N N 80 R2A C29 H292 SING N N 81 R2A C30 H302 SING N N 82 R2A C30 H301 SING N N 83 R2A C34 H341 SING N N 84 R2A C40 H402 SING N N 85 R2A C40 H401 SING N N 86 R2A C45 H451 SING N N 87 R2A C47 H473 SING N N 88 R2A C47 H471 SING N N 89 R2A C47 H472 SING N N 90 R2A C48 H481 SING N N 91 R2A C49 H491 SING N N 92 R2A C52 H521 SING N N 93 R2A C53 H531 SING N N 94 R2A C54 H541 SING N N 95 R2A C56 H562 SING N N 96 R2A C56 H561 SING N N 97 R2A C57 H571 SING N N 98 R2A C57 H572 SING N N 99 R2A N31 H311 SING N N 100 R2A O15 H2 SING N N 101 R2A O43 H3 SING N N 102 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R2A SMILES ACDLabs 12.01 "c2(oc1ccc(cc1c2CC(O)=O)C)C#Cc7cc(C(N6CCN(CCNC(=O)c5cc(C#Cc4c(CC(O)=O)c3cc(C)ccc3o4)ccc5)CC6)=O)ccc7" R2A InChI InChI 1.03 "InChI=1S/C46H39N3O8/c1-29-9-13-39-35(23-29)37(27-43(50)51)41(56-39)15-11-31-5-3-7-33(25-31)45(54)47-17-18-48-19-21-49(22-20-48)46(55)34-8-4-6-32(26-34)12-16-42-38(28-44(52)53)36-24-30(2)10-14-40(36)57-42/h3-10,13-14,23-26H,17-22,27-28H2,1-2H3,(H,47,54)(H,50,51)(H,52,53)" R2A InChIKey InChI 1.03 FKZRCFVPEMPOMA-UHFFFAOYSA-N R2A SMILES_CANONICAL CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6oc7ccc(C)cc7c6CC(O)=O)c(CC(O)=O)c2c1" R2A SMILES CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6oc7ccc(C)cc7c6CC(O)=O)c(CC(O)=O)c2c1" R2A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6c(c7cc(ccc7o6)C)CC(=O)O)CC(=O)O" R2A SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6c(c7cc(ccc7o6)C)CC(=O)O)CC(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R2A "SYSTEMATIC NAME" ACDLabs 12.01 "(2-{[3-(4-{2-[(3-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}benzene-1-carbonyl)amino]ethyl}piperazine-1-carbonyl)phenyl]ethynyl}-5-methyl-1-benzofuran-3-yl)acetic acid" R2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-[2-[3-[2-[4-[3-[2-[3-(2-hydroxy-2-oxoethyl)-5-methyl-1-benzofuran-2-yl]ethynyl]phenyl]carbonylpiperazin-1-yl]ethylcarbamoyl]phenyl]ethynyl]-5-methyl-1-benzofuran-3-yl]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R2A "Create component" 2020-01-24 RCSB R2A "Initial release" 2021-01-27 RCSB ##