data_R2I # _chem_comp.id R2I _chem_comp.name "9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 F2 N2 O4 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-22 _chem_comp.pdbx_modified_date 2023-06-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 526.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R2I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BPU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R2I C11 C1 C 0 1 Y N N -23.477 -0.619 12.082 -4.410 -2.794 0.253 C11 R2I 1 R2I C12 C2 C 0 1 Y N N -24.411 0.366 11.985 -4.264 -1.530 0.799 C12 R2I 2 R2I C13 C3 C 0 1 Y N N -24.814 0.807 10.752 -3.249 -0.701 0.364 C13 R2I 3 R2I C14 C4 C 0 1 N N N -27.220 -1.071 6.836 -0.000 0.715 2.168 C14 R2I 4 R2I RU1 RU1 RU 0 0 N N N -25.437 0.668 5.408 1.285 1.318 -0.036 RU1 R2I 5 R2I RU2 RU2 RU 0 0 N N N -24.389 -0.745 6.853 -1.285 1.319 -0.036 RU2 R2I 6 R2I F1 F1 F 0 1 N N N -28.731 6.542 5.696 5.403 -3.604 0.681 F1 R2I 7 R2I F2 F2 F 0 1 N N N -23.097 -1.058 13.298 -5.404 -3.603 0.681 F2 R2I 8 R2I O3 O1 O 0 1 N N N -23.600 1.416 4.968 1.321 2.926 -0.891 O3 R2I 9 R2I O1 O2 O 0 1 N N N -27.213 -0.144 5.979 1.320 1.224 1.783 O1 R2I 10 R2I O2 O3 O 0 1 N N N -26.184 -1.553 7.399 -1.321 1.225 1.783 O2 R2I 11 R2I O4 O4 O 0 1 N N N -22.587 0.001 6.342 -1.320 2.927 -0.891 O4 R2I 12 R2I N1 N1 N 0 1 N N N -25.687 2.064 6.849 1.345 -0.299 -1.065 N1 R2I 13 R2I N2 N2 N 0 1 N N N -24.605 0.639 8.287 -1.345 -0.298 -1.065 N2 R2I 14 R2I C2 C5 C 0 1 Y N N -26.488 3.215 6.576 2.373 -1.136 -0.622 C2 R2I 15 R2I C3 C6 C 0 1 Y N N -25.881 4.421 6.249 2.521 -2.405 -1.169 C3 R2I 16 R2I C4 C7 C 0 1 Y N N -26.637 5.555 5.966 3.538 -3.230 -0.730 C4 R2I 17 R2I C7 C8 C 0 1 Y N N -27.877 3.141 6.566 3.252 -0.699 0.360 C7 R2I 18 R2I C1 C9 C 0 1 N N N -25.361 1.717 8.078 -0.000 -0.943 -0.864 C1 R2I 19 R2I C6 C10 C 0 1 Y N N -28.639 4.245 6.276 4.267 -1.528 0.796 C6 R2I 20 R2I C5 C11 C 0 1 Y N N -28.012 5.422 5.985 4.410 -2.794 0.253 C5 R2I 21 R2I C8 C12 C 0 1 Y N N -24.258 0.257 9.618 -2.374 -1.136 -0.623 C8 R2I 22 R2I C16 C13 C 0 1 N N N -22.560 0.937 5.505 0.000 3.519 -0.652 C16 R2I 23 R2I C10 C14 C 0 1 Y N N -22.927 -1.191 10.988 -3.542 -3.228 -0.734 C10 R2I 24 R2I C9 C15 C 0 1 Y N N -23.307 -0.752 9.741 -2.522 -2.404 -1.169 C9 R2I 25 R2I H1 H1 H 0 1 N N N -24.834 0.800 12.879 -4.945 -1.192 1.567 H1 R2I 26 R2I H2 H2 H 0 1 N N N -25.563 1.581 10.670 -3.136 0.285 0.790 H2 R2I 27 R2I H3 H3 H 0 1 N N N -27.857 -0.708 7.656 -0.001 -0.338 1.887 H3 R2I 28 R2I H4 H4 H 0 1 N N N -27.709 -1.924 6.342 -0.000 0.698 3.258 H4 R2I 29 R2I H5 H5 H 0 1 N N N -24.803 4.480 6.214 1.841 -2.745 -1.936 H5 R2I 30 R2I H6 H6 H 0 1 N N N -26.167 6.501 5.741 3.653 -4.217 -1.155 H6 R2I 31 R2I H7 H7 H 0 1 N N N -28.362 2.202 6.789 3.142 0.288 0.783 H7 R2I 32 R2I H8 H8 H 0 1 N N N -24.825 2.571 8.518 -0.000 -1.836 -1.490 H8 R2I 33 R2I H9 H9 H 0 1 N N N -26.303 1.555 8.623 -0.000 -1.322 0.158 H9 R2I 34 R2I H10 H10 H 0 1 N N N -29.717 4.183 6.278 4.951 -1.189 1.560 H10 R2I 35 R2I H11 H11 H 0 1 N N N -21.928 0.584 4.677 0.000 3.820 0.395 H11 R2I 36 R2I H12 H12 H 0 1 N N N -22.065 1.780 6.010 0.001 4.462 -1.198 H12 R2I 37 R2I H13 H13 H 0 1 N N N -22.199 -1.982 11.091 -3.659 -4.213 -1.162 H13 R2I 38 R2I H14 H14 H 0 1 N N N -22.867 -1.190 8.857 -1.842 -2.744 -1.937 H14 R2I 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R2I O3 RU1 SING N N 1 R2I O3 C16 SING N N 2 R2I RU1 O1 SING N N 3 R2I RU1 N1 SING N N 4 R2I RU1 RU2 SING N N 5 R2I C16 O4 SING N N 6 R2I F1 C5 SING N N 7 R2I C4 C5 DOUB Y N 8 R2I C4 C3 SING Y N 9 R2I O1 C14 SING N N 10 R2I C5 C6 SING Y N 11 R2I C3 C2 DOUB Y N 12 R2I C6 C7 DOUB Y N 13 R2I O4 RU2 SING N N 14 R2I C7 C2 SING Y N 15 R2I C2 N1 SING N N 16 R2I C14 O2 SING N N 17 R2I N1 C1 SING N N 18 R2I RU2 O2 SING N N 19 R2I RU2 N2 SING N N 20 R2I C1 N2 SING N N 21 R2I N2 C8 SING N N 22 R2I C8 C9 DOUB Y N 23 R2I C8 C13 SING Y N 24 R2I C9 C10 SING Y N 25 R2I C13 C12 DOUB Y N 26 R2I C10 C11 DOUB Y N 27 R2I C12 C11 SING Y N 28 R2I C11 F2 SING N N 29 R2I C12 H1 SING N N 30 R2I C13 H2 SING N N 31 R2I C14 H3 SING N N 32 R2I C14 H4 SING N N 33 R2I C3 H5 SING N N 34 R2I C4 H6 SING N N 35 R2I C7 H7 SING N N 36 R2I C1 H8 SING N N 37 R2I C1 H9 SING N N 38 R2I C6 H10 SING N N 39 R2I C16 H11 SING N N 40 R2I C16 H12 SING N N 41 R2I C10 H13 SING N N 42 R2I C9 H14 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R2I InChI InChI 1.06 "InChI=1S/C13H10F2N2.2CH2O2.2Ru/c14-10-1-5-12(6-2-10)16-9-17-13-7-3-11(15)4-8-13;2*2-1-3;;/h1-8H,9H2;2*1H2;;/q3*-2;2*+3" R2I InChIKey InChI 1.06 TVQMJLRZOPYFSZ-UHFFFAOYSA-N R2I SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(cc1)N2CN(c3ccc(F)cc3)[Ru]45OCO[Ru]24OCO5" R2I SMILES CACTVS 3.385 "Fc1ccc(cc1)N2CN(c3ccc(F)cc3)[Ru]45OCO[Ru]24OCO5" R2I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1N2CN([Ru]34[Ru]2(OCO3)OCO4)c5ccc(cc5)F)F" R2I SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1N2CN([Ru]34[Ru]2(OCO3)OCO4)c5ccc(cc5)F)F" # _pdbx_chem_comp_identifier.comp_id R2I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R2I "Create component" 2022-11-22 PDBE R2I "Initial release" 2023-06-28 RCSB #