data_R2R # _chem_comp.id R2R _chem_comp.name "ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "H28 N14 O2 Ru3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-02 _chem_comp.pdbx_modified_date 2019-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UIW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R2R N01 N1 N 0 1 N N N 141.338 162.688 165.339 -0.204 3.082 -0.650 N01 R2R 1 R2R N03 N2 N 0 1 N N N 144.926 162.797 167.272 0.211 -0.922 0.680 N03 R2R 2 R2R N04 N3 N 0 1 N N N 143.006 160.737 166.651 -0.569 0.383 -1.904 N04 R2R 3 R2R N05 N4 N 0 1 N N N 143.257 164.748 165.961 0.576 1.776 1.933 N05 R2R 4 R2R O06 O1 O 0 1 N N N 143.998 162.415 164.716 1.766 1.087 -0.514 O06 R2R 5 R2R N08 N5 N 0 1 N N N 145.825 161.724 161.365 3.763 -2.181 0.494 N08 R2R 6 R2R N09 N6 N 0 1 N N N 144.740 160.083 163.471 3.993 0.733 1.158 N09 R2R 7 R2R N10 N7 N 0 1 N N N 144.990 164.093 162.781 1.395 -1.597 -1.250 N10 R2R 8 R2R N11 N8 N 0 1 N N N 143.071 162.034 162.160 1.404 -0.708 1.614 N11 R2R 9 R2R N12 N9 N 0 1 N N N 146.659 162.142 164.094 3.984 -0.155 -1.705 N12 R2R 10 R2R O13 O2 O 0 1 N N N 142.264 163.070 167.896 -1.759 1.073 0.543 O13 R2R 11 R2R N15 N10 N 0 1 N N N 140.437 163.761 171.247 -3.758 -2.163 -0.558 N15 R2R 12 R2R N16 N11 N 0 1 N N N 141.523 165.403 169.140 -4.307 0.148 1.271 N16 R2R 13 R2R N17 N12 N 0 1 N N N 141.273 161.392 169.830 -1.068 -1.010 -1.208 N17 R2R 14 R2R N18 N13 N 0 1 N N N 139.604 163.343 168.519 -3.539 0.646 -1.584 N18 R2R 15 R2R N19 N14 N 0 1 N N N 143.192 163.452 170.452 -1.836 -1.507 1.647 N19 R2R 16 R2R RU2 RU1 RU 0 0 N N N 143.131 162.743 166.306 0.004 1.080 0.015 RU2 R2R 17 R2R RU3 RU2 RU 0 0 N N N 144.865 162.088 163.127 2.694 -0.432 -0.046 RU3 R2R 18 R2R RU1 RU3 RU 0 0 N N N 141.398 163.397 169.485 -2.688 -0.431 0.031 RU1 R2R 19 R2R H1 H1 H 0 1 N N N 140.600 162.847 165.995 0.219 3.207 -1.558 H1 R2R 20 R2R H2 H2 H 0 1 N N N 141.317 163.398 164.635 -1.173 3.361 -0.662 H2 R2R 21 R2R H3 H3 H 0 1 N N N 144.776 162.974 168.245 -0.643 -1.440 0.539 H3 R2R 22 R2R H4 H4 H 0 1 N N N 145.391 161.919 167.161 0.988 -1.376 0.224 H4 R2R 23 R2R H5 H5 H 0 1 N N N 142.541 160.576 167.522 -0.021 -0.419 -2.176 H5 R2R 24 R2R H6 H6 H 0 1 N N N 142.489 160.303 165.913 -1.556 0.173 -1.933 H6 R2R 25 R2R H7 H7 H 0 1 N N N 142.834 165.244 166.719 0.692 1.008 2.577 H7 R2R 26 R2R H8 H8 H 0 1 N N N 144.218 165.013 165.885 1.416 2.333 1.880 H8 R2R 27 R2R H9 H9 H 0 1 N N N 146.812 161.689 161.523 3.132 -2.932 0.729 H9 R2R 28 R2R H10 H10 H 0 1 N N N 145.516 160.849 160.992 4.397 -2.458 -0.240 H10 R2R 29 R2R H11 H11 H 0 1 N N N 144.276 159.922 164.342 4.284 1.569 0.673 H11 R2R 30 R2R H12 H12 H 0 1 N N N 144.223 159.650 162.733 3.561 0.960 2.042 H12 R2R 31 R2R H13 H13 H 0 1 N N N 144.567 164.590 163.539 0.584 -1.892 -0.726 H13 R2R 32 R2R H14 H14 H 0 1 N N N 145.951 164.359 162.704 1.125 -1.094 -2.082 H14 R2R 33 R2R H15 H15 H 0 1 N N N 142.333 162.193 162.816 0.803 -1.507 1.476 H15 R2R 34 R2R H16 H16 H 0 1 N N N 143.050 162.744 161.456 1.930 -0.795 2.470 H16 R2R 35 R2R H17 H17 H 0 1 N N N 146.509 162.319 165.067 3.849 0.754 -2.121 H17 R2R 36 R2R H18 H18 H 0 1 N N N 147.124 161.264 163.983 4.948 -0.292 -1.440 H18 R2R 37 R2R H19 H19 H 0 1 N N N 140.559 162.981 171.861 -3.707 -2.878 0.151 H19 R2R 38 R2R H20 H20 H 0 1 N N N 140.819 164.582 171.672 -4.717 -1.938 -0.777 H20 R2R 39 R2R H21 H21 H 0 1 N N N 141.100 165.899 169.898 -4.189 1.094 1.602 H21 R2R 40 R2R H22 H22 H 0 1 N N N 142.484 165.669 169.063 -5.188 0.041 0.789 H22 R2R 41 R2R H23 H23 H 0 1 N N N 140.809 161.231 170.701 -0.184 -0.772 -0.783 H23 R2R 42 R2R H24 H24 H 0 1 N N N 140.756 160.958 169.092 -1.112 -1.994 -1.424 H24 R2R 43 R2R H25 H25 H 0 1 N N N 138.867 163.502 169.175 -4.530 0.467 -1.656 H25 R2R 44 R2R H26 H26 H 0 1 N N N 139.583 164.054 167.816 -3.356 1.634 -1.497 H26 R2R 45 R2R H27 H27 H 0 1 N N N 143.042 163.629 171.425 -0.884 -1.217 1.813 H27 R2R 46 R2R H28 H28 H 0 1 N N N 143.658 162.574 170.341 -2.394 -1.408 2.482 H28 R2R 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R2R N08 RU3 SING N N 1 R2R N11 RU3 SING N N 2 R2R N10 RU3 SING N N 3 R2R RU3 N09 SING N N 4 R2R RU3 N12 SING N N 5 R2R RU3 O06 SING N N 6 R2R O06 RU2 SING N N 7 R2R N01 RU2 SING N N 8 R2R N05 RU2 SING N N 9 R2R RU2 N04 SING N N 10 R2R RU2 N03 SING N N 11 R2R RU2 O13 SING N N 12 R2R O13 RU1 SING N N 13 R2R N18 RU1 SING N N 14 R2R N16 RU1 SING N N 15 R2R RU1 N17 SING N N 16 R2R RU1 N19 SING N N 17 R2R RU1 N15 SING N N 18 R2R N01 H1 SING N N 19 R2R N01 H2 SING N N 20 R2R N03 H3 SING N N 21 R2R N03 H4 SING N N 22 R2R N04 H5 SING N N 23 R2R N04 H6 SING N N 24 R2R N05 H7 SING N N 25 R2R N05 H8 SING N N 26 R2R N08 H9 SING N N 27 R2R N08 H10 SING N N 28 R2R N09 H11 SING N N 29 R2R N09 H12 SING N N 30 R2R N10 H13 SING N N 31 R2R N10 H14 SING N N 32 R2R N11 H15 SING N N 33 R2R N11 H16 SING N N 34 R2R N12 H17 SING N N 35 R2R N12 H18 SING N N 36 R2R N15 H19 SING N N 37 R2R N15 H20 SING N N 38 R2R N16 H21 SING N N 39 R2R N16 H22 SING N N 40 R2R N17 H23 SING N N 41 R2R N17 H24 SING N N 42 R2R N18 H25 SING N N 43 R2R N18 H26 SING N N 44 R2R N19 H27 SING N N 45 R2R N19 H28 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R2R SMILES ACDLabs 12.01 "N[Ru](N)(N)(N)(O[Ru](N)(N)(N)(N)N)O[Ru](N)(N)(N)(N)N" R2R InChI InChI 1.03 "InChI=1S/14H2N.2O.3Ru/h14*1H2;;;;;/q14*-1;;;+4;2*+5" R2R InChIKey InChI 1.03 FOOPNNMQSUSGAT-UHFFFAOYSA-N R2R SMILES_CANONICAL CACTVS 3.385 "N[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)N" R2R SMILES CACTVS 3.385 "N[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)N" R2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "N[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)N" R2R SMILES "OpenEye OEToolkits" 2.0.7 "N[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)O[Ru](N)(N)(N)(N)N" # _pdbx_chem_comp_identifier.comp_id R2R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R2R "Create component" 2019-10-02 RCSB R2R "Initial release" 2019-11-27 RCSB ##