data_R3B # _chem_comp.id R3B _chem_comp.name "(2S,9S,12R)-2-cyclohexyl-12-[2-(3,4-dimethoxyphenyl)ethyl]-24,27-dimethoxy-11,18,22-trioxa-4-azatetracyclo[21.2.2.113,17.04,9]octacosa-1(25),13(28),14,16,23,26-hexaene-3,10-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C42 H53 N O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 715.872 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R3B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7A6X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R3B C3 C1 C 0 1 N N N 26.088 1.151 -1.038 -2.554 3.952 0.330 C3 R3B 1 R3B CBK C2 C 0 1 N N N 19.197 3.630 -0.470 -2.864 -2.965 1.034 CBK R3B 2 R3B CBL C3 C 0 1 N N N 17.984 4.209 0.195 -3.413 -4.104 1.895 CBL R3B 3 R3B CBM C4 C 0 1 N N N 16.930 4.392 -0.890 -4.942 -4.054 1.892 CBM R3B 4 R3B CBN C5 C 0 1 N N N 16.591 3.066 -1.508 -5.455 -4.204 0.459 CBN R3B 5 R3B CBO C6 C 0 1 N N N 17.792 2.479 -2.203 -4.906 -3.065 -0.402 CBO R3B 6 R3B CBJ C7 C 0 1 N N N 18.886 2.278 -1.146 -3.377 -3.115 -0.399 CBJ R3B 7 R3B CBI C8 C 0 1 N N S 20.184 1.621 -1.790 -2.828 -1.975 -1.260 CBI R3B 8 R3B CBG C9 C 0 1 N N N 19.956 0.240 -2.164 -1.412 -1.662 -0.847 CBG R3B 9 R3B OBH O1 O 0 1 N N N 19.052 -0.416 -1.624 -0.969 -0.551 -1.046 OBH R3B 10 R3B N N1 N 0 1 N N N 20.691 -0.395 -3.122 -0.631 -2.586 -0.264 N R3B 11 R3B CBE C10 C 0 1 N N N 21.801 0.317 -3.806 -1.091 -3.970 -0.136 CBE R3B 12 R3B CBD C11 C 0 1 N N N 21.920 -0.069 -5.282 -0.004 -4.916 -0.653 CBD R3B 13 R3B CBC C12 C 0 1 N N N 21.733 -1.540 -5.529 1.302 -4.621 0.090 CBC R3B 14 R3B CB C13 C 0 1 N N N 20.389 -2.013 -4.940 1.740 -3.189 -0.214 CB R3B 15 R3B CA C14 C 0 1 N N S 20.372 -1.833 -3.442 0.680 -2.197 0.267 CA R3B 16 R3B C C15 C 0 1 N N N 21.256 -2.759 -2.819 1.046 -0.823 -0.229 C R3B 17 R3B O O2 O 0 1 N N N 21.182 -3.958 -3.083 1.104 -0.626 -1.419 O R3B 18 R3B OAX O3 O 0 1 N N N 22.143 -2.244 -1.924 1.310 0.187 0.612 OAX R3B 19 R3B CAK C16 C 0 1 N N R 23.114 -3.179 -1.347 1.865 1.396 0.035 CAK R3B 20 R3B CAL C17 C 0 1 N N N 22.856 -3.260 0.170 3.391 1.345 0.136 CAL R3B 21 R3B CAM C18 C 0 1 N N N 23.465 -4.503 0.860 3.921 0.199 -0.728 CAM R3B 22 R3B CAN C19 C 0 1 Y N N 22.781 -5.720 0.617 5.424 0.148 -0.629 CAN R3B 23 R3B CAO C20 C 0 1 Y N N 21.632 -6.066 1.324 6.025 -0.619 0.351 CAO R3B 24 R3B CAP C21 C 0 1 Y N N 23.262 -6.615 -0.340 6.199 0.866 -1.522 CAP R3B 25 R3B CAQ C22 C 0 1 Y N N 22.611 -7.816 -0.600 7.578 0.822 -1.435 CAQ R3B 26 R3B CAR C23 C 0 1 Y N N 21.469 -8.162 0.118 8.186 0.059 -0.452 CAR R3B 27 R3B OAS O4 O 0 1 N N N 20.721 -9.316 -0.046 9.543 0.015 -0.365 OAS R3B 28 R3B CAT C24 C 0 1 N N N 21.307 -10.429 -0.736 10.279 0.781 -1.321 CAT R3B 29 R3B CAU C25 C 0 1 Y N N 20.978 -7.282 1.074 7.407 -0.667 0.444 CAU R3B 30 R3B OAV O5 O 0 1 N N N 19.839 -7.731 1.707 8.000 -1.417 1.411 OAV R3B 31 R3B CAW C26 C 0 1 N N N 19.331 -6.943 2.772 7.137 -2.136 2.294 CAW R3B 32 R3B CAJ C27 C 0 1 Y N N 24.414 -2.741 -1.757 1.364 2.619 0.753 CAJ R3B 33 R3B CAI C28 C 0 1 Y N N 24.901 -1.453 -1.503 0.014 2.930 0.762 CAI R3B 34 R3B CAF C29 C 0 1 Y N N 25.190 -3.595 -2.534 2.267 3.450 1.399 CAF R3B 35 R3B CAE C30 C 0 1 Y N N 26.440 -3.228 -3.015 1.827 4.597 2.032 CAE R3B 36 R3B CAG C31 C 0 1 Y N N 26.930 -1.964 -2.745 0.484 4.913 2.030 CAG R3B 37 R3B CAH C32 C 0 1 Y N N 26.169 -1.064 -1.995 -0.428 4.076 1.398 CAH R3B 38 R3B OAH O6 O 0 1 N N N 26.753 0.168 -1.802 -1.747 4.404 1.417 OAH R3B 39 R3B C33 C33 C 0 1 N N N 26.161 0.778 0.401 -3.904 3.456 0.856 C33 R3B 40 R3B CBW C34 C 0 1 N N N 26.038 2.041 1.199 -5.005 3.880 -0.122 CBW R3B 41 R3B OBW O7 O 0 1 N N N 24.643 2.152 1.660 -5.815 2.741 -0.436 OBW R3B 42 R3B CBV C35 C 0 1 Y N N 23.565 2.044 0.785 -5.132 1.581 -0.648 CBV R3B 43 R3B CBS C36 C 0 1 Y N N 22.556 1.152 1.104 -4.309 1.464 -1.763 CBS R3B 44 R3B OBT O8 O 0 1 N N N 22.758 0.422 2.257 -4.223 2.486 -2.657 OBT R3B 45 R3B CBU C37 C 0 1 N N N 21.632 -0.304 2.754 -3.359 2.296 -3.779 CBU R3B 46 R3B CBR C38 C 0 1 Y N N 21.453 1.013 0.240 -3.576 0.304 -1.962 CBR R3B 47 R3B CBP C39 C 0 1 Y N N 21.335 1.762 -0.931 -3.660 -0.734 -1.053 CBP R3B 48 R3B CBQ C40 C 0 1 Y N N 22.350 2.677 -1.219 -4.496 -0.631 0.042 CBQ R3B 49 R3B CBY C41 C 0 1 Y N N 23.458 2.832 -0.372 -5.236 0.525 0.247 CBY R3B 50 R3B OBZ O9 O 0 1 N N N 24.496 3.700 -0.619 -6.062 0.623 1.324 OBZ R3B 51 R3B CCA C42 C 0 1 N N N 24.358 4.674 -1.670 -6.118 -0.502 2.203 CCA R3B 52 R3B H31 H1 H 0 1 N N N 26.572 2.127 -1.191 -2.716 4.774 -0.367 H31 R3B 53 R3B H32 H2 H 0 1 N N N 25.035 1.211 -1.350 -2.043 3.137 -0.184 H32 R3B 54 R3B HBK H3 H 0 1 N N N 19.980 3.478 0.287 -3.197 -2.010 1.441 HBK R3B 55 R3B HCD H4 H 0 1 N N N 19.556 4.336 -1.233 -1.775 -3.001 1.036 HCD R3B 56 R3B HBL H5 H 0 1 N N N 18.230 5.179 0.651 -3.081 -5.059 1.488 HBL R3B 57 R3B HCE H6 H 0 1 N N N 17.614 3.522 0.970 -3.048 -3.997 2.916 HCE R3B 58 R3B HCF H7 H 0 1 N N N 17.320 5.066 -1.667 -5.334 -4.866 2.505 HCF R3B 59 R3B HBM H8 H 0 1 N N N 16.023 4.829 -0.447 -5.275 -3.099 2.299 HBM R3B 60 R3B HCG H9 H 0 1 N N N 15.782 3.205 -2.241 -5.123 -5.159 0.052 HCG R3B 61 R3B HBN H10 H 0 1 N N N 16.257 2.375 -0.720 -6.545 -4.168 0.457 HBN R3B 62 R3B HBO H11 H 0 1 N N N 17.527 1.513 -2.658 -5.272 -3.172 -1.423 HBO R3B 63 R3B HCH H12 H 0 1 N N N 18.147 3.167 -2.984 -5.239 -2.109 0.005 HCH R3B 64 R3B HBJ H13 H 0 1 N N N 18.506 1.587 -0.379 -3.044 -4.070 -0.806 HBJ R3B 65 R3B HBI H14 H 0 1 N N N 20.384 2.187 -2.712 -2.850 -2.263 -2.311 HBI R3B 66 R3B HBE H15 H 0 1 N N N 22.745 0.069 -3.299 -1.296 -4.190 0.912 HBE R3B 67 R3B HCI H16 H 0 1 N N N 21.621 1.400 -3.738 -2.001 -4.106 -0.721 HCI R3B 68 R3B HCJ H17 H 0 1 N N N 22.919 0.221 -5.639 -0.303 -5.949 -0.472 HCJ R3B 69 R3B HBD H18 H 0 1 N N N 21.154 0.480 -5.849 0.138 -4.760 -1.723 HBD R3B 70 R3B HBC H19 H 0 1 N N N 21.742 -1.730 -6.612 1.144 -4.734 1.162 HBC R3B 71 R3B HCK H20 H 0 1 N N N 22.554 -2.096 -5.052 2.073 -5.316 -0.241 HCK R3B 72 R3B HB1 H21 H 0 1 N N N 19.573 -1.424 -5.384 2.682 -2.985 0.294 HB1 R3B 73 R3B HB2 H22 H 0 1 N N N 20.245 -3.077 -5.178 1.880 -3.075 -1.289 HB2 R3B 74 R3B HA H23 H 0 1 N N N 19.348 -2.033 -3.094 0.632 -2.208 1.356 HA R3B 75 R3B HAK H24 H 0 1 N N N 22.926 -4.178 -1.768 1.578 1.455 -1.015 HAK R3B 76 R3B HAL H25 H 0 1 N N N 23.284 -2.362 0.640 3.810 2.288 -0.215 HAL R3B 77 R3B H35 H26 H 0 1 N N N 21.768 -3.275 0.333 3.681 1.181 1.174 H35 R3B 78 R3B HAM H27 H 0 1 N N N 24.500 -4.617 0.505 3.502 -0.744 -0.378 HAM R3B 79 R3B H36 H28 H 0 1 N N N 23.467 -4.324 1.945 3.631 0.362 -1.766 H36 R3B 80 R3B HAO H29 H 0 1 N N N 21.241 -5.392 2.072 5.418 -1.182 1.045 HAO R3B 81 R3B HAP H30 H 0 1 N N N 24.158 -6.370 -0.890 5.725 1.461 -2.289 HAP R3B 82 R3B HAQ H31 H 0 1 N N N 22.992 -8.482 -1.360 8.181 1.383 -2.134 HAQ R3B 83 R3B HAT H32 H 0 1 N N N 20.584 -11.257 -0.778 11.347 0.659 -1.140 HAT R3B 84 R3B H37 H33 H 0 1 N N N 21.577 -10.126 -1.758 10.038 0.436 -2.326 H37 R3B 85 R3B H38 H34 H 0 1 N N N 22.210 -10.758 -0.201 10.013 1.834 -1.225 H38 R3B 86 R3B H4A H35 H 0 1 N N N 18.427 -7.418 3.181 6.491 -1.434 2.822 H4A R3B 87 R3B HAW H36 H 0 1 N N N 20.092 -6.861 3.563 6.524 -2.831 1.719 HAW R3B 88 R3B H39 H37 H 0 1 N N N 19.081 -5.939 2.398 7.736 -2.692 3.015 H39 R3B 89 R3B HAI H38 H 0 1 N N N 24.308 -0.755 -0.931 -0.694 2.278 0.273 HAI R3B 90 R3B HAF H39 H 0 1 N N N 24.807 -4.577 -2.771 3.318 3.200 1.407 HAF R3B 91 R3B HAE H40 H 0 1 N N N 27.025 -3.925 -3.596 2.534 5.244 2.529 HAE R3B 92 R3B HAG H41 H 0 1 N N N 27.902 -1.672 -3.114 0.141 5.813 2.519 HAG R3B 93 R3B H33 H42 H 0 1 N N N 25.339 0.092 0.654 -3.886 2.369 0.937 H33 R3B 94 R3B H34 H43 H 0 1 N N N 27.124 0.291 0.615 -4.097 3.893 1.835 H34 R3B 95 R3B HBX H44 H 0 1 N N N 26.716 2.004 2.065 -5.623 4.652 0.337 HBX R3B 96 R3B HBY H45 H 0 1 N N N 26.294 2.907 0.570 -4.552 4.268 -1.035 HBY R3B 97 R3B HBW H46 H 0 1 N N N 21.917 -0.842 3.670 -2.340 2.128 -3.428 HBW R3B 98 R3B HBU H47 H 0 1 N N N 20.815 0.397 2.980 -3.692 1.432 -4.353 HBU R3B 99 R3B HBV H48 H 0 1 N N N 21.297 -1.026 1.995 -3.383 3.184 -4.411 HBV R3B 100 R3B HBR H49 H 0 1 N N N 20.676 0.306 0.491 -2.938 0.212 -2.829 HBR R3B 101 R3B HBQ H50 H 0 1 N N N 22.281 3.279 -2.113 -4.574 -1.453 0.739 HBQ R3B 102 R3B HCA H51 H 0 1 N N N 25.273 5.281 -1.730 -6.460 -1.378 1.651 HCA R3B 103 R3B HCB H52 H 0 1 N N N 24.196 4.159 -2.628 -5.126 -0.695 2.611 HCB R3B 104 R3B HCC H53 H 0 1 N N N 23.499 5.326 -1.455 -6.812 -0.293 3.017 HCC R3B 105 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R3B CBC CBD SING N N 1 R3B CBC CB SING N N 2 R3B CBD CBE SING N N 3 R3B CB CA SING N N 4 R3B CBE N SING N N 5 R3B CA N SING N N 6 R3B CA C SING N N 7 R3B N CBG SING N N 8 R3B O C DOUB N N 9 R3B CAE CAG DOUB Y N 10 R3B CAE CAF SING Y N 11 R3B C OAX SING N N 12 R3B CAG CAH SING Y N 13 R3B CAF CAJ DOUB Y N 14 R3B CBO CBN SING N N 15 R3B CBO CBJ SING N N 16 R3B CBG CBI SING N N 17 R3B CBG OBH DOUB N N 18 R3B CAH OAH SING N N 19 R3B CAH CAI DOUB Y N 20 R3B OAX CAK SING N N 21 R3B OAH C3 SING N N 22 R3B CBI CBJ SING N N 23 R3B CBI CBP SING N N 24 R3B CAJ CAI SING Y N 25 R3B CAJ CAK SING N N 26 R3B CCA OBZ SING N N 27 R3B CBN CBM SING N N 28 R3B CAK CAL SING N N 29 R3B CBQ CBP DOUB Y N 30 R3B CBQ CBY SING Y N 31 R3B CBJ CBK SING N N 32 R3B C3 C33 SING N N 33 R3B CBP CBR SING Y N 34 R3B CBM CBL SING N N 35 R3B CAT OAS SING N N 36 R3B OBZ CBY SING N N 37 R3B CAQ CAP DOUB Y N 38 R3B CAQ CAR SING Y N 39 R3B CBK CBL SING N N 40 R3B CBY CBV DOUB Y N 41 R3B CAP CAN SING Y N 42 R3B OAS CAR SING N N 43 R3B CAR CAU DOUB Y N 44 R3B CAL CAM SING N N 45 R3B CBR CBS DOUB Y N 46 R3B C33 CBW SING N N 47 R3B CAN CAM SING N N 48 R3B CAN CAO DOUB Y N 49 R3B CBV CBS SING Y N 50 R3B CBV OBW SING N N 51 R3B CAU CAO SING Y N 52 R3B CAU OAV SING N N 53 R3B CBS OBT SING N N 54 R3B CBW OBW SING N N 55 R3B OAV CAW SING N N 56 R3B OBT CBU SING N N 57 R3B C3 H31 SING N N 58 R3B C3 H32 SING N N 59 R3B CBK HBK SING N N 60 R3B CBK HCD SING N N 61 R3B CBL HBL SING N N 62 R3B CBL HCE SING N N 63 R3B CBM HCF SING N N 64 R3B CBM HBM SING N N 65 R3B CBN HCG SING N N 66 R3B CBN HBN SING N N 67 R3B CBO HBO SING N N 68 R3B CBO HCH SING N N 69 R3B CBJ HBJ SING N N 70 R3B CBI HBI SING N N 71 R3B CBE HBE SING N N 72 R3B CBE HCI SING N N 73 R3B CBD HCJ SING N N 74 R3B CBD HBD SING N N 75 R3B CBC HBC SING N N 76 R3B CBC HCK SING N N 77 R3B CB HB1 SING N N 78 R3B CB HB2 SING N N 79 R3B CA HA SING N N 80 R3B CAK HAK SING N N 81 R3B CAL HAL SING N N 82 R3B CAL H35 SING N N 83 R3B CAM HAM SING N N 84 R3B CAM H36 SING N N 85 R3B CAO HAO SING N N 86 R3B CAP HAP SING N N 87 R3B CAQ HAQ SING N N 88 R3B CAT HAT SING N N 89 R3B CAT H37 SING N N 90 R3B CAT H38 SING N N 91 R3B CAW H4A SING N N 92 R3B CAW HAW SING N N 93 R3B CAW H39 SING N N 94 R3B CAI HAI SING N N 95 R3B CAF HAF SING N N 96 R3B CAE HAE SING N N 97 R3B CAG HAG SING N N 98 R3B C33 H33 SING N N 99 R3B C33 H34 SING N N 100 R3B CBW HBX SING N N 101 R3B CBW HBY SING N N 102 R3B CBU HBW SING N N 103 R3B CBU HBU SING N N 104 R3B CBU HBV SING N N 105 R3B CBR HBR SING N N 106 R3B CBQ HBQ SING N N 107 R3B CCA HCA SING N N 108 R3B CCA HCB SING N N 109 R3B CCA HCC SING N N 110 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R3B InChI InChI 1.03 "InChI=1S/C42H53NO9/c1-46-35-20-18-28(24-36(35)47-2)17-19-34-30-14-10-15-32(25-30)50-22-11-23-51-40-37(48-3)26-31(27-38(40)49-4)39(29-12-6-5-7-13-29)41(44)43-21-9-8-16-33(43)42(45)52-34/h10,14-15,18,20,24-27,29,33-34,39H,5-9,11-13,16-17,19,21-23H2,1-4H3/t33-,34+,39-/m0/s1" R3B InChIKey InChI 1.03 YSZSLPRWNYBWRS-LSFNHRITSA-N R3B SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CC[C@H]2OC(=O)[C@@H]3CCCCN3C(=O)[C@@H](C4CCCCC4)c5cc(OC)c(OCCCOc6cccc2c6)c(OC)c5)cc1OC" R3B SMILES CACTVS 3.385 "COc1ccc(CC[CH]2OC(=O)[CH]3CCCCN3C(=O)[CH](C4CCCCC4)c5cc(OC)c(OCCCOc6cccc2c6)c(OC)c5)cc1OC" R3B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1OC)CC[C@@H]2c3cccc(c3)OCCCOc4c(cc(cc4OC)[C@@H](C(=O)N5CCCC[C@H]5C(=O)O2)C6CCCCC6)OC" R3B SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1OC)CCC2c3cccc(c3)OCCCOc4c(cc(cc4OC)C(C(=O)N5CCCCC5C(=O)O2)C6CCCCC6)OC" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R3B "Create component" 2020-08-27 PDBE R3B "Initial release" 2021-03-17 RCSB ##