data_R3D # _chem_comp.id R3D _chem_comp.name "Ru2-(OH)8 cluster" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "H8 O8 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-22 _chem_comp.pdbx_modified_date 2023-06-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 338.199 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BPH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R3D O1 O1 O 0 1 N N N -22.266 2.271 11.715 2.131 0.147 1.585 O1 R3D 1 R3D O2 O2 O 0 1 N N N -23.123 2.768 10.014 -2.131 -0.147 -1.585 O2 R3D 2 R3D O3 O3 O 0 1 N N N -23.382 4.704 12.727 1.170 -1.852 0.225 O3 R3D 3 R3D O4 O4 O 0 1 N N N -24.668 4.925 10.846 -1.170 1.852 -0.225 O4 R3D 4 R3D O5 O5 O 0 1 N N N -25.597 3.260 13.756 2.128 -0.239 -1.578 O5 R3D 5 R3D O6 O6 O 0 1 N N N -26.736 3.138 11.744 -2.128 0.239 1.578 O6 R3D 6 R3D O7 O7 O 0 1 N N N -24.449 0.809 12.836 1.250 1.800 -0.221 O7 R3D 7 R3D O8 O8 O 0 1 N N N -25.250 0.926 10.711 -1.250 -1.800 0.221 O8 R3D 8 R3D RU1 RU1 RU 0 0 N N N -23.898 2.752 12.799 1.210 -0.026 0.002 RU1 R3D 9 R3D RU2 RU2 RU 0 0 N N N -24.967 2.926 10.802 -1.210 0.026 -0.002 RU2 R3D 10 R3D H1 H1 H 0 1 N N N -21.534 2.111 12.299 2.347 1.061 1.816 H1 R3D 11 R3D H2 H2 H 0 1 N N N -22.734 3.632 9.942 -2.347 -1.061 -1.816 H2 R3D 12 R3D H3 H3 H 0 1 N N N -22.883 4.929 13.503 0.719 -2.326 -0.488 H3 R3D 13 R3D H4 H4 H 0 1 N N N -25.436 5.353 11.205 -0.719 2.326 0.488 H4 R3D 14 R3D H5 H5 H 0 1 N N N -25.442 3.271 14.693 1.559 -0.322 -2.356 H5 R3D 15 R3D H6 H6 H 0 1 N N N -27.441 2.908 11.150 -1.559 0.322 2.356 H6 R3D 16 R3D H7 H7 H 0 1 N N N -24.123 0.402 13.630 2.141 2.171 -0.267 H7 R3D 17 R3D H8 H8 H 0 1 N N N -26.112 0.712 11.049 -2.141 -2.171 0.267 H8 R3D 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R3D O2 RU2 SING N N 1 R3D O8 RU2 SING N N 2 R3D RU2 O4 SING N N 3 R3D RU2 O6 SING N N 4 R3D RU2 RU1 SING N N 5 R3D O1 RU1 SING N N 6 R3D O3 RU1 SING N N 7 R3D RU1 O7 SING N N 8 R3D RU1 O5 SING N N 9 R3D O1 H1 SING N N 10 R3D O2 H2 SING N N 11 R3D O3 H3 SING N N 12 R3D O4 H4 SING N N 13 R3D O5 H5 SING N N 14 R3D O6 H6 SING N N 15 R3D O7 H7 SING N N 16 R3D O8 H8 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R3D InChI InChI 1.06 InChI=1S/8H2O.2Ru/h8*1H2;;/q;;;;;;;;2*+4/p-8 R3D InChIKey InChI 1.06 SLNUTTKQNQBOGX-UHFFFAOYSA-F R3D SMILES_CANONICAL CACTVS 3.385 "O[Ru](O)(O)O.O[Ru](O)(O)O" R3D SMILES CACTVS 3.385 "O[Ru](O)(O)O.O[Ru](O)(O)O" R3D SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "O[Ru](O)(O)(O)[Ru](O)(O)(O)O" R3D SMILES "OpenEye OEToolkits" 3.1.0.0 "O[Ru](O)(O)(O)[Ru](O)(O)(O)O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R3D "Create component" 2022-11-22 PDBE R3D "Initial release" 2023-06-28 RCSB #