data_R3J # _chem_comp.id R3J _chem_comp.name "benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-28 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.501 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R3J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VLL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R3J C10 C1 C 0 1 N N N 40.092 16.164 17.856 -0.960 -3.830 0.410 C10 R3J 1 R3J C11 C2 C 0 1 N N N 39.643 14.442 16.225 -1.157 -1.742 -0.638 C11 R3J 2 R3J C12 C3 C 0 1 N N N 38.683 13.516 15.511 -2.010 -0.759 -1.399 C12 R3J 3 R3J C21 C4 C 0 1 Y N N 43.559 12.696 12.566 6.795 1.326 -0.638 C21 R3J 4 R3J C22 C5 C 0 1 Y N N 42.553 12.306 11.720 8.085 1.736 -0.326 C22 R3J 5 R3J C23 C6 C 0 1 N N N 39.407 12.193 15.241 -1.192 0.498 -1.702 C23 R3J 6 R3J C24 C7 C 0 1 N N N 38.167 14.208 14.244 -2.473 -1.395 -2.711 C24 R3J 7 R3J C01 C8 C 0 1 N N N 40.686 13.114 10.494 10.406 1.912 -0.802 C01 R3J 8 R3J O01 O1 O 0 1 N N N 42.026 13.275 10.847 9.102 1.464 -1.181 O01 R3J 9 R3J N01 N1 N 0 1 Y N N 42.081 11.062 11.666 8.330 2.390 0.798 N01 R3J 10 R3J C02 C9 C 0 1 Y N N 42.594 10.136 12.495 7.370 2.675 1.656 C02 R3J 11 R3J C03 C10 C 0 1 Y N N 43.623 10.494 13.395 6.065 2.298 1.410 C03 R3J 12 R3J C04 C11 C 0 1 Y N N 44.102 11.786 13.422 5.766 1.610 0.242 C04 R3J 13 R3J C05 C12 C 0 1 N N N 45.233 12.151 14.409 4.352 1.188 -0.063 C05 R3J 14 R3J C06 C13 C 0 1 N N N 45.121 13.559 15.023 4.103 -0.210 0.508 C06 R3J 15 R3J N02 N2 N 0 1 N N N 43.775 13.803 15.495 2.728 -0.620 0.211 N02 R3J 16 R3J C07 C14 C 0 1 N N N 43.368 15.080 16.045 2.281 -1.824 0.620 C07 R3J 17 R3J O02 O2 O 0 1 N N N 44.115 15.996 16.110 3.019 -2.570 1.234 O02 R3J 18 R3J C08 C15 C 0 1 N N N 41.916 15.212 16.513 0.892 -2.239 0.320 C08 R3J 19 R3J C09 C16 C 0 1 N N N 41.487 16.105 17.503 0.427 -3.476 0.738 C09 R3J 20 R3J O03 O3 O 0 1 N N N 42.384 16.949 18.154 1.225 -4.330 1.425 O03 R3J 21 R3J O04 O4 O 0 1 N N N 39.648 17.023 18.844 -1.431 -4.902 0.748 O04 R3J 22 R3J N03 N3 N 0 1 N N N 39.195 15.361 17.236 -1.700 -2.928 -0.272 N03 R3J 23 R3J N04 N4 N 0 1 N N N 40.979 14.382 15.882 0.071 -1.418 -0.359 N04 R3J 24 R3J N05 N5 N 0 1 N N N 37.588 13.248 16.419 -3.178 -0.399 -0.592 N05 R3J 25 R3J H1 H1 H 0 1 N N N 43.917 13.715 12.554 6.597 0.796 -1.558 H1 R3J 26 R3J H2 H2 H 0 1 N N N 39.746 11.759 16.193 -0.323 0.230 -2.303 H2 R3J 27 R3J H3 H3 H 0 1 N N N 38.719 11.494 14.744 -1.809 1.209 -2.252 H3 R3J 28 R3J H4 H4 H 0 1 N N N 40.276 12.376 14.592 -0.863 0.951 -0.767 H4 R3J 29 R3J H5 H5 H 0 1 N N N 37.662 15.146 14.518 -3.055 -2.291 -2.495 H5 R3J 30 R3J H6 H6 H 0 1 N N N 39.013 14.429 13.576 -3.090 -0.684 -3.261 H6 R3J 31 R3J H7 H7 H 0 1 N N N 37.456 13.546 13.728 -1.604 -1.663 -3.312 H7 R3J 32 R3J H8 H8 H 0 1 N N N 40.386 13.924 9.813 11.124 1.630 -1.571 H8 R3J 33 R3J H9 H9 H 0 1 N N N 40.553 12.145 9.991 10.399 2.996 -0.691 H9 R3J 34 R3J H10 H10 H 0 1 N N N 40.062 13.146 11.399 10.687 1.451 0.145 H10 R3J 35 R3J H11 H11 H 0 1 N N N 42.221 9.123 12.473 7.608 3.211 2.564 H11 R3J 36 R3J H12 H12 H 0 1 N N N 44.035 9.753 14.064 5.285 2.537 2.118 H12 R3J 37 R3J H13 H13 H 0 1 N N N 45.222 11.418 15.229 3.656 1.895 0.390 H13 R3J 38 R3J H14 H14 H 0 1 N N N 46.191 12.087 13.872 4.202 1.172 -1.142 H14 R3J 39 R3J H15 H15 H 0 1 N N N 45.821 13.642 15.868 4.798 -0.916 0.055 H15 R3J 40 R3J H16 H16 H 0 1 N N N 45.378 14.308 14.259 4.252 -0.194 1.587 H16 R3J 41 R3J H17 H17 H 0 1 N N N 43.103 13.065 15.440 2.139 -0.025 -0.279 H17 R3J 42 R3J H18 H18 H 0 1 N N N 41.917 17.476 18.792 0.796 -5.162 1.665 H18 R3J 43 R3J H19 H19 H 0 1 N N N 38.226 15.407 17.480 -2.620 -3.130 -0.501 H19 R3J 44 R3J H20 H20 H 0 1 N N N 37.701 13.368 17.405 -3.298 -0.788 0.289 H20 R3J 45 R3J C25 C17 C 0 1 N N N ? ? ? -4.087 0.472 -1.072 C25 R3J 46 R3J O26 O5 O 0 1 N N N ? ? ? -5.161 0.803 -0.331 O26 R3J 47 R3J O25 O6 O 0 1 N N N ? ? ? -3.938 0.959 -2.176 O25 R3J 48 R3J C26 C18 C 0 1 N N N ? ? ? -6.098 1.747 -0.912 C26 R3J 49 R3J C27 C19 C 0 1 Y N N ? ? ? -7.227 1.994 0.055 C27 R3J 50 R3J C28 C20 C 0 1 Y N N ? ? ? -7.131 3.015 0.983 C28 R3J 51 R3J C29 C21 C 0 1 Y N N ? ? ? -8.167 3.242 1.870 C29 R3J 52 R3J C30 C22 C 0 1 Y N N ? ? ? -9.298 2.449 1.830 C30 R3J 53 R3J C31 C23 C 0 1 Y N N ? ? ? -9.394 1.429 0.902 C31 R3J 54 R3J C32 C24 C 0 1 Y N N ? ? ? -8.361 1.204 0.012 C32 R3J 55 R3J H21 H21 H 0 1 N N N ? ? ? -5.586 2.686 -1.121 H21 R3J 56 R3J H22 H22 H 0 1 N N N ? ? ? -6.498 1.337 -1.840 H22 R3J 57 R3J H23 H23 H 0 1 N N N ? ? ? -6.247 3.635 1.014 H23 R3J 58 R3J H24 H24 H 0 1 N N N ? ? ? -8.091 4.039 2.595 H24 R3J 59 R3J H25 H25 H 0 1 N N N ? ? ? -10.106 2.626 2.524 H25 R3J 60 R3J H26 H26 H 0 1 N N N ? ? ? -10.278 0.809 0.871 H26 R3J 61 R3J H27 H27 H 0 1 N N N ? ? ? -8.436 0.407 -0.713 H27 R3J 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R3J C01 O01 SING N N 1 R3J O01 C22 SING N N 2 R3J N01 C22 DOUB Y N 3 R3J N01 C02 SING Y N 4 R3J C22 C21 SING Y N 5 R3J C02 C03 DOUB Y N 6 R3J C21 C04 DOUB Y N 7 R3J C03 C04 SING Y N 8 R3J C04 C05 SING N N 9 R3J C24 C12 SING N N 10 R3J C05 C06 SING N N 11 R3J C06 N02 SING N N 12 R3J C23 C12 SING N N 13 R3J N02 C07 SING N N 14 R3J C12 C11 SING N N 15 R3J C12 N05 SING N N 16 R3J N04 C11 DOUB N N 17 R3J N04 C08 SING N N 18 R3J C07 O02 DOUB N N 19 R3J C07 C08 SING N N 20 R3J C11 N03 SING N N 21 R3J C08 C09 DOUB N N 22 R3J N03 C10 SING N N 23 R3J C09 C10 SING N N 24 R3J C09 O03 SING N N 25 R3J C10 O04 DOUB N N 26 R3J C21 H1 SING N N 27 R3J C23 H2 SING N N 28 R3J C23 H3 SING N N 29 R3J C23 H4 SING N N 30 R3J C24 H5 SING N N 31 R3J C24 H6 SING N N 32 R3J C24 H7 SING N N 33 R3J C01 H8 SING N N 34 R3J C01 H9 SING N N 35 R3J C01 H10 SING N N 36 R3J C02 H11 SING N N 37 R3J C03 H12 SING N N 38 R3J C05 H13 SING N N 39 R3J C05 H14 SING N N 40 R3J C06 H15 SING N N 41 R3J C06 H16 SING N N 42 R3J N02 H17 SING N N 43 R3J O03 H18 SING N N 44 R3J N03 H19 SING N N 45 R3J N05 H20 SING N N 46 R3J N05 C25 SING N N 47 R3J C25 O26 SING N N 48 R3J C25 O25 DOUB N N 49 R3J O26 C26 SING N N 50 R3J C26 C27 SING N N 51 R3J C27 C28 SING Y N 52 R3J C28 C29 DOUB Y N 53 R3J C29 C30 SING Y N 54 R3J C30 C31 DOUB Y N 55 R3J C31 C32 SING Y N 56 R3J C32 C27 DOUB Y N 57 R3J C26 H21 SING N N 58 R3J C26 H22 SING N N 59 R3J C28 H23 SING N N 60 R3J C29 H24 SING N N 61 R3J C30 H25 SING N N 62 R3J C31 H26 SING N N 63 R3J C32 H27 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R3J SMILES ACDLabs 12.01 "C2(=O)C(=C(C(NCCc1cc(OC)ncc1)=O)N=C(N2)C(NC(OCc3ccccc3)=O)(C)C)O" R3J InChI InChI 1.03 "InChI=1S/C24H27N5O6/c1-24(2,29-23(33)35-14-16-7-5-4-6-8-16)22-27-18(19(30)21(32)28-22)20(31)26-12-10-15-9-11-25-17(13-15)34-3/h4-9,11,13,30H,10,12,14H2,1-3H3,(H,26,31)(H,29,33)(H,27,28,32)" R3J InChIKey InChI 1.03 FTJIBWRYBXLDQU-UHFFFAOYSA-N R3J SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)C(C)(C)NC(=O)OCc3ccccc3)ccn1" R3J SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)C(C)(C)NC(=O)OCc3ccccc3)ccn1" R3J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccnc(c2)OC)NC(=O)OCc3ccccc3" R3J SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccnc(c2)OC)NC(=O)OCc3ccccc3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R3J "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate" R3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[2-[4-[2-(2-methoxypyridin-4-yl)ethylcarbamoyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R3J "Create component" 2020-01-28 RCSB R3J "Initial release" 2021-02-24 RCSB ##