data_R3L # _chem_comp.id R3L _chem_comp.name "4-methyl-~{N}-(3-methylphenyl)-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.507 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R3L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BOF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R3L N1 N1 N 0 1 N N N -82.963 -20.046 84.935 -2.360 2.274 -0.257 N1 R3L 1 R3L N3 N2 N 0 1 Y N N -76.765 -20.099 88.410 -0.949 -4.648 0.689 N3 R3L 2 R3L C4 C1 C 0 1 Y N N -85.349 -19.636 87.666 1.301 1.962 0.037 C4 R3L 3 R3L C5 C2 C 0 1 N N N -85.964 -18.450 88.347 2.374 1.002 -0.298 C5 R3L 4 R3L C6 C3 C 0 1 Y N N -87.636 -17.756 90.041 4.631 0.277 -0.111 C6 R3L 5 R3L C7 C4 C 0 1 Y N N -87.979 -16.568 89.403 5.961 0.661 -0.234 C7 R3L 6 R3L C8 C5 C 0 1 Y N N -88.947 -15.724 89.931 6.937 -0.293 -0.445 C8 R3L 7 R3L C10 C6 C 0 1 Y N N -89.576 -16.092 91.109 6.592 -1.629 -0.534 C10 R3L 8 R3L C13 C7 C 0 1 Y N N -84.433 -19.327 86.663 -0.026 1.664 -0.272 C13 R3L 9 R3L C15 C8 C 0 1 Y N N -81.694 -19.540 84.963 -2.814 0.970 -0.187 C15 R3L 10 R3L C17 C9 C 0 1 Y N N -78.883 -19.893 87.262 -1.430 -2.356 0.446 C17 R3L 11 R3L C20 C10 C 0 1 Y N N -77.413 -20.635 89.453 0.308 -4.383 0.985 C20 R3L 12 R3L C21 C11 C 0 1 Y N N -77.499 -19.739 87.349 -1.817 -3.694 0.422 C21 R3L 13 R3L C22 C12 C 0 1 Y N N -79.653 -18.974 83.855 -4.583 -0.678 -0.319 C22 R3L 14 R3L C24 C13 C 0 1 Y N N -81.336 -18.819 82.396 -5.322 1.431 -0.702 C24 R3L 15 R3L N N3 N 0 1 N N N -86.759 -18.692 89.421 3.640 1.241 0.097 N R3L 16 R3L C C14 C 0 1 N N N -83.915 -22.744 85.009 -1.797 4.747 1.023 C R3L 17 R3L O O1 O 0 1 N N N -85.799 -17.321 87.895 2.114 -0.004 -0.929 O R3L 18 R3L C1 C15 C 0 1 Y N N -84.369 -21.661 85.959 -0.707 3.765 0.679 C1 R3L 19 R3L C11 C16 C 0 1 Y N N -89.239 -17.265 91.755 5.269 -2.015 -0.412 C11 R3L 20 R3L C12 C17 C 0 1 Y N N -88.273 -18.101 91.224 4.289 -1.066 -0.200 C12 R3L 21 R3L C14 C18 C 0 1 Y N N -83.965 -20.311 85.794 -1.028 2.567 0.051 C14 R3L 22 R3L C16 C19 C 0 1 Y N N -79.653 -19.505 86.053 -2.408 -1.283 0.146 C16 R3L 23 R3L C18 C20 C 0 1 Y N N -79.518 -20.462 88.364 -0.103 -2.042 0.757 C18 R3L 24 R3L C19 C21 C 0 1 Y N N -78.782 -20.838 89.473 0.771 -3.080 1.029 C19 R3L 25 R3L C2 C22 C 0 1 Y N N -85.229 -21.954 87.017 0.609 4.062 0.980 C2 R3L 26 R3L C23 C23 C 0 1 Y N N -81.039 -19.170 83.730 -4.174 0.668 -0.402 C23 R3L 27 R3L C25 C24 C 0 1 N N N -77.860 -18.139 82.251 -6.783 -1.879 -0.577 C25 R3L 28 R3L C3 C25 C 0 1 Y N N -85.718 -20.965 87.853 1.612 3.168 0.668 C3 R3L 29 R3L C9 C26 C 0 1 N N N -89.289 -14.428 89.250 8.379 0.123 -0.579 C9 R3L 30 R3L N2 N4 N 0 1 Y N N -80.995 -19.664 86.112 -1.979 -0.026 0.078 N2 R3L 31 R3L N4 N5 N 0 1 Y N N -78.940 -19.141 84.961 -3.675 -1.611 -0.043 N4 R3L 32 R3L N5 N6 N 0 1 Y N N -80.250 -18.426 81.742 -6.342 0.625 -0.795 N5 R3L 33 R3L N6 N7 N 0 1 Y N N -79.235 -18.518 82.627 -5.925 -0.692 -0.560 N6 R3L 34 R3L H14 H1 H 0 1 N N N -83.224 -20.292 84.002 -2.964 2.984 -0.523 H14 R3L 35 R3L H6 H2 H 0 1 N N N -87.484 -16.298 88.482 6.231 1.705 -0.166 H6 R3L 36 R3L H10 H3 H 0 1 N N N -90.340 -15.453 91.528 7.357 -2.373 -0.699 H10 R3L 37 R3L H13 H4 H 0 1 N N N -84.081 -18.312 86.557 -0.273 0.733 -0.761 H13 R3L 38 R3L H17 H5 H 0 1 N N N -76.839 -20.923 90.321 0.988 -5.195 1.198 H17 R3L 39 R3L H18 H6 H 0 1 N N N -76.986 -19.301 86.506 -2.839 -3.951 0.183 H18 R3L 40 R3L H19 H7 H 0 1 N N N -82.324 -18.864 81.961 -5.352 2.503 -0.833 H19 R3L 41 R3L H5 H8 H 0 1 N N N -86.726 -19.612 89.813 3.864 2.082 0.525 H5 R3L 42 R3L H2 H9 H 0 1 N N N -82.982 -23.192 85.381 -1.950 5.428 0.185 H2 R3L 43 R3L H H10 H 0 1 N N N -84.692 -23.520 84.940 -2.722 4.208 1.226 H R3L 44 R3L H1 H11 H 0 1 N N N -83.741 -22.309 84.014 -1.507 5.317 1.906 H1 R3L 45 R3L H11 H12 H 0 1 N N N -89.732 -17.531 92.679 5.003 -3.059 -0.482 H11 R3L 46 R3L H12 H13 H 0 1 N N N -88.015 -19.020 91.729 3.256 -1.367 -0.104 H12 R3L 47 R3L H15 H14 H 0 1 N N N -80.588 -20.610 88.352 0.231 -1.015 0.784 H15 R3L 48 R3L H16 H15 H 0 1 N N N -79.264 -21.279 90.333 1.803 -2.875 1.274 H16 R3L 49 R3L H3 H16 H 0 1 N N N -85.521 -22.979 87.189 0.853 4.998 1.461 H3 R3L 50 R3L H21 H17 H 0 1 N N N -77.845 -17.801 81.204 -6.809 -2.294 -1.585 H21 R3L 51 R3L H20 H18 H 0 1 N N N -77.513 -17.324 82.904 -6.385 -2.624 0.112 H20 R3L 52 R3L H22 H19 H 0 1 N N N -77.196 -19.008 82.365 -7.792 -1.603 -0.271 H22 R3L 53 R3L H4 H20 H 0 1 N N N -86.391 -21.227 88.656 2.638 3.400 0.913 H4 R3L 54 R3L H7 H21 H 0 1 N N N -90.106 -14.595 88.532 8.849 0.124 0.405 H7 R3L 55 R3L H8 H22 H 0 1 N N N -89.607 -13.691 90.002 8.900 -0.579 -1.230 H8 R3L 56 R3L H9 H23 H 0 1 N N N -88.404 -14.049 88.717 8.431 1.124 -1.007 H9 R3L 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R3L N5 C24 DOUB Y N 1 R3L N5 N6 SING Y N 2 R3L C25 N6 SING N N 3 R3L C24 C23 SING Y N 4 R3L N6 C22 SING Y N 5 R3L C23 C22 DOUB Y N 6 R3L C23 C15 SING Y N 7 R3L C22 N4 SING Y N 8 R3L N1 C15 SING N N 9 R3L N1 C14 SING N N 10 R3L N4 C16 DOUB Y N 11 R3L C15 N2 DOUB Y N 12 R3L C C1 SING N N 13 R3L C14 C1 DOUB Y N 14 R3L C14 C13 SING Y N 15 R3L C1 C2 SING Y N 16 R3L C16 N2 SING Y N 17 R3L C16 C17 SING N N 18 R3L C13 C4 DOUB Y N 19 R3L C2 C3 DOUB Y N 20 R3L C17 C21 DOUB Y N 21 R3L C17 C18 SING Y N 22 R3L C21 N3 SING Y N 23 R3L C4 C3 SING Y N 24 R3L C4 C5 SING N N 25 R3L O C5 DOUB N N 26 R3L C5 N SING N N 27 R3L C18 C19 DOUB Y N 28 R3L N3 C20 DOUB Y N 29 R3L C9 C8 SING N N 30 R3L C7 C8 DOUB Y N 31 R3L C7 C6 SING Y N 32 R3L N C6 SING N N 33 R3L C20 C19 SING Y N 34 R3L C8 C10 SING Y N 35 R3L C6 C12 DOUB Y N 36 R3L C10 C11 DOUB Y N 37 R3L C12 C11 SING Y N 38 R3L N1 H14 SING N N 39 R3L C7 H6 SING N N 40 R3L C10 H10 SING N N 41 R3L C13 H13 SING N N 42 R3L C20 H17 SING N N 43 R3L C21 H18 SING N N 44 R3L C24 H19 SING N N 45 R3L N H5 SING N N 46 R3L C H2 SING N N 47 R3L C H SING N N 48 R3L C H1 SING N N 49 R3L C11 H11 SING N N 50 R3L C12 H12 SING N N 51 R3L C18 H15 SING N N 52 R3L C19 H16 SING N N 53 R3L C2 H3 SING N N 54 R3L C25 H21 SING N N 55 R3L C25 H20 SING N N 56 R3L C25 H22 SING N N 57 R3L C3 H4 SING N N 58 R3L C9 H7 SING N N 59 R3L C9 H8 SING N N 60 R3L C9 H9 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R3L InChI InChI 1.06 "InChI=1S/C26H23N7O/c1-16-6-4-8-20(12-16)29-26(34)18-10-9-17(2)22(13-18)30-24-21-15-28-33(3)25(21)32-23(31-24)19-7-5-11-27-14-19/h4-15H,1-3H3,(H,29,34)(H,30,31,32)" R3L InChIKey InChI 1.06 BZJAAQAQRWJHJG-UHFFFAOYSA-N R3L SMILES_CANONICAL CACTVS 3.385 "Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cccc(C)c4)nc(nc12)c5cccnc5" R3L SMILES CACTVS 3.385 "Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cccc(C)c4)nc(nc12)c5cccnc5" R3L SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc(c1)NC(=O)c2ccc(c(c2)Nc3c4cnn(c4nc(n3)c5cccnc5)C)C" R3L SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc(c1)NC(=O)c2ccc(c(c2)Nc3c4cnn(c4nc(n3)c5cccnc5)C)C" # _pdbx_chem_comp_identifier.comp_id R3L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "4-methyl-~{N}-(3-methylphenyl)-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R3L "Create component" 2022-11-23 PDBE R3L "Initial release" 2023-03-08 RCSB #