data_R41 # _chem_comp.id R41 _chem_comp.name "[(2R)-7-(2-aminopyridin-4-yl)-5-chloro-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-29 _chem_comp.pdbx_modified_date 2020-04-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.822 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R41 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VN5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R41 C2 C1 C 0 1 Y N N 4.673 4.651 90.419 4.646 2.170 0.579 C2 R41 1 R41 C4 C2 C 0 1 Y N N 6.812 5.532 90.266 3.257 3.021 -1.062 C4 R41 2 R41 C5 C3 C 0 1 Y N N 7.271 4.766 91.320 2.480 1.883 -1.058 C5 R41 3 R41 C6 C4 C 0 1 Y N N 6.376 3.893 91.965 2.804 0.838 -0.184 C6 R41 4 R41 C7 C5 C 0 1 Y N N 5.051 3.844 91.493 3.915 0.991 0.645 C7 R41 5 R41 C8 C6 C 0 1 Y N N 6.810 3.048 93.110 1.993 -0.403 -0.149 C8 R41 6 R41 C12 C7 C 0 1 Y N N 7.567 1.405 95.233 0.487 -2.728 -0.084 C12 R41 7 R41 C15 C8 C 0 1 N N R 8.541 5.025 95.696 -1.491 0.371 0.564 C15 R41 8 R41 C17 C9 C 0 1 Y N N 7.596 3.571 94.162 0.596 -0.326 -0.042 C17 R41 9 R41 C18 C10 C 0 1 N N N 7.486 5.812 96.449 -2.601 1.185 -0.051 C18 R41 10 R41 C21 C11 C 0 1 N N N 7.577 7.715 94.802 -4.980 1.727 -0.294 C21 R41 11 R41 C24 C12 C 0 1 N N N 4.858 8.116 95.755 -5.299 -1.005 0.655 C24 R41 12 R41 N1 N1 N 0 1 N N N 3.372 4.624 89.928 5.757 2.337 1.398 N1 R41 13 R41 N3 N2 N 0 1 Y N N 5.557 5.457 89.852 4.299 3.135 -0.260 N3 R41 14 R41 C9 C13 C 0 1 Y N N 6.419 1.712 93.151 2.617 -1.644 -0.228 C9 R41 15 R41 C10 C14 C 0 1 Y N N 6.791 0.891 94.196 1.866 -2.802 -0.198 C10 R41 16 R41 CL11 CL1 CL 0 0 N N N 6.270 -0.765 94.176 2.648 -4.348 -0.301 CL11 R41 17 R41 C13 C15 C 0 1 Y N N 7.968 2.733 95.212 -0.138 -1.502 -0.005 C13 R41 18 R41 C14 C16 C 0 1 N N N 8.799 3.566 96.174 -1.597 -1.112 0.136 C14 R41 19 R41 O16 O1 O 0 1 N N N 8.095 4.820 94.341 -0.215 0.765 0.030 O16 R41 20 R41 O19 O2 O 0 1 N N N 7.014 5.341 97.462 -2.341 2.055 -0.854 O19 R41 21 R41 N20 N3 N 0 1 N N N 7.069 7.041 96.018 -3.882 0.945 0.293 N20 R41 22 R41 C22 C17 C 0 1 N N N 6.407 7.727 93.824 -6.030 0.756 -0.843 C22 R41 23 R41 N23 N4 N 0 1 N N N 5.362 8.557 94.440 -6.431 -0.177 0.218 N23 R41 24 R41 C25 C18 C 0 1 N N N 6.028 7.830 96.727 -4.219 -0.106 1.265 C25 R41 25 R41 H1 H1 H 0 1 N N N 7.492 6.207 89.769 3.012 3.831 -1.733 H1 R41 26 R41 H2 H2 H 0 1 N N N 8.299 4.836 91.643 1.631 1.799 -1.720 H2 R41 27 R41 H3 H3 H 0 1 N N N 4.332 3.186 91.959 4.203 0.204 1.326 H3 R41 28 R41 H4 H4 H 0 1 N N N 7.857 0.768 96.055 -0.101 -3.634 -0.060 H4 R41 29 R41 H5 H5 H 0 1 N N N 9.491 5.579 95.710 -1.503 0.462 1.650 H5 R41 30 R41 H6 H6 H 0 1 N N N 8.426 7.157 94.379 -5.430 2.359 0.471 H6 R41 31 R41 H7 H7 H 0 1 N N N 7.893 8.742 95.036 -4.595 2.349 -1.103 H7 R41 32 R41 H8 H8 H 0 1 N N N 4.221 8.906 96.180 -5.640 -1.722 1.402 H8 R41 33 R41 H9 H9 H 0 1 N N N 4.266 7.198 95.624 -4.887 -1.539 -0.200 H9 R41 34 R41 H10 H10 H 0 1 N N N 3.290 5.264 89.164 6.018 1.632 2.011 H10 R41 35 R41 H11 H11 H 0 1 N N N 3.153 3.700 89.614 6.271 3.158 1.356 H11 R41 36 R41 H12 H12 H 0 1 N N N 5.814 1.311 92.351 3.692 -1.701 -0.313 H12 R41 37 R41 H13 H13 H 0 1 N N N 8.461 3.425 97.211 -2.086 -1.706 0.909 H13 R41 38 R41 H14 H14 H 0 1 N N N 9.866 3.309 96.098 -2.120 -1.207 -0.815 H14 R41 39 R41 H15 H15 H 0 1 N N N 6.035 6.704 93.663 -6.901 1.316 -1.183 H15 R41 40 R41 H16 H16 H 0 1 N N N 6.719 8.160 92.862 -5.608 0.197 -1.678 H16 R41 41 R41 H17 H17 H 0 1 N N N 5.733 9.479 94.551 -6.841 0.316 0.997 H17 R41 42 R41 H19 H19 H 0 1 N N N 6.459 8.781 97.074 -4.595 0.350 2.181 H19 R41 43 R41 H20 H20 H 0 1 N N N 5.658 7.259 97.591 -3.331 -0.698 1.487 H20 R41 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R41 N3 C4 DOUB Y N 1 R41 N3 C2 SING Y N 2 R41 N1 C2 SING N N 3 R41 C4 C5 SING Y N 4 R41 C2 C7 DOUB Y N 5 R41 C5 C6 DOUB Y N 6 R41 C7 C6 SING Y N 7 R41 C6 C8 SING N N 8 R41 C8 C9 DOUB Y N 9 R41 C8 C17 SING Y N 10 R41 C9 C10 SING Y N 11 R41 C22 N23 SING N N 12 R41 C22 C21 SING N N 13 R41 C17 O16 SING N N 14 R41 C17 C13 DOUB Y N 15 R41 CL11 C10 SING N N 16 R41 C10 C12 DOUB Y N 17 R41 O16 C15 SING N N 18 R41 N23 C24 SING N N 19 R41 C21 N20 SING N N 20 R41 C13 C12 SING Y N 21 R41 C13 C14 SING N N 22 R41 C15 C14 SING N N 23 R41 C15 C18 SING N N 24 R41 C24 C25 SING N N 25 R41 N20 C18 SING N N 26 R41 N20 C25 SING N N 27 R41 C18 O19 DOUB N N 28 R41 C4 H1 SING N N 29 R41 C5 H2 SING N N 30 R41 C7 H3 SING N N 31 R41 C12 H4 SING N N 32 R41 C15 H5 SING N N 33 R41 C21 H6 SING N N 34 R41 C21 H7 SING N N 35 R41 C24 H8 SING N N 36 R41 C24 H9 SING N N 37 R41 N1 H10 SING N N 38 R41 N1 H11 SING N N 39 R41 C9 H12 SING N N 40 R41 C14 H13 SING N N 41 R41 C14 H14 SING N N 42 R41 C22 H15 SING N N 43 R41 C22 H16 SING N N 44 R41 N23 H17 SING N N 45 R41 C25 H19 SING N N 46 R41 C25 H20 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R41 SMILES ACDLabs 12.01 "c1(cc(ccn1)c2cc(cc3c2OC(C3)C(=O)N4CCNCC4)Cl)N" R41 InChI InChI 1.03 "InChI=1S/C18H19ClN4O2/c19-13-7-12-8-15(18(24)23-5-3-21-4-6-23)25-17(12)14(10-13)11-1-2-22-16(20)9-11/h1-2,7,9-10,15,21H,3-6,8H2,(H2,20,22)/t15-/m1/s1" R41 InChIKey InChI 1.03 JGHCITCCEQEXTL-OAHLLOKOSA-N R41 SMILES_CANONICAL CACTVS 3.385 "Nc1cc(ccn1)c2cc(Cl)cc3C[C@@H](Oc23)C(=O)N4CCNCC4" R41 SMILES CACTVS 3.385 "Nc1cc(ccn1)c2cc(Cl)cc3C[CH](Oc23)C(=O)N4CCNCC4" R41 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1c2cc(cc3c2O[C@H](C3)C(=O)N4CCNCC4)Cl)N" R41 SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1c2cc(cc3c2OC(C3)C(=O)N4CCNCC4)Cl)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R41 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R)-7-(2-aminopyridin-4-yl)-5-chloro-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone" R41 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-7-(2-azanylpyridin-4-yl)-5-chloranyl-2,3-dihydro-1-benzofuran-2-yl]-piperazin-1-yl-methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R41 "Create component" 2020-01-29 RCSB R41 "Initial release" 2020-04-29 RCSB ##