data_R47 # _chem_comp.id R47 _chem_comp.name "N-[(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alpha-glutamyl-L-alpha-glutamine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H35 Br Cl N4 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms RXP470.1 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 818.004 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GQL _chem_comp.pdbx_subcomponent_list "0YL GLU GLU NH2" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R47 O4 O4 O 0 1 N N N 10.126 26.679 4.354 0.332 -0.797 -2.126 O4 0YL 1 R47 N1 N1 N 0 1 Y N N 6.881 22.709 5.486 -2.981 0.732 -2.362 N1 0YL 2 R47 O1 O1 O 0 1 Y N N 7.990 22.985 4.818 -1.793 0.727 -2.588 O1 0YL 3 R47 C25 C25 C 0 1 N N N 9.257 26.862 3.533 0.897 -0.485 -1.100 C25 0YL 4 R47 C17 C17 C 0 1 N N S 9.064 25.799 2.519 1.021 0.967 -0.719 C17 0YL 5 R47 C16 C16 C 0 1 N N N 9.020 24.386 3.070 0.355 1.834 -1.789 C16 0YL 6 R47 C14 C14 C 0 1 Y N N 6.554 24.392 4.031 -2.051 2.158 -0.991 C14 0YL 7 R47 C13 C13 C 0 1 Y N N 5.984 23.586 5.022 -3.281 1.570 -1.400 C13 0YL 8 R47 C12 C12 C 0 1 Y N N 4.594 23.542 5.490 -4.629 1.848 -0.848 C12 0YL 9 R47 C11 C11 C 0 1 Y N N 3.617 24.204 4.777 -4.784 2.779 0.179 C11 0YL 10 R47 C10 C10 C 0 1 Y N N 2.304 24.115 5.199 -6.036 3.037 0.691 C10 0YL 11 R47 C7 C7 C 0 1 Y N N 1.982 23.362 6.323 -7.149 2.368 0.183 C7 0YL 12 R47 C8 C8 C 0 1 Y N N 2.959 22.668 7.009 -6.995 1.438 -0.844 C8 0YL 13 R47 C9 C9 C 0 1 Y N N 4.276 22.749 6.584 -5.743 1.184 -1.360 C9 0YL 14 R47 C15 C15 C 0 1 Y N N 7.873 23.991 3.936 -1.130 1.577 -1.792 C15 0YL 15 R47 CL1 CL1 CL 0 0 N N N -2.747 25.392 6.092 -12.254 1.412 0.118 CL1 0YL 16 R47 C1 C1 C 0 1 Y N N -1.649 24.110 6.645 -10.865 2.242 0.747 C1 0YL 17 R47 C2 C2 C 0 1 Y N N -0.320 24.221 6.305 -9.612 1.979 0.229 C2 0YL 18 R47 C3 C3 C 0 1 Y N N -2.114 23.037 7.387 -11.015 3.170 1.763 C3 0YL 19 R47 C4 C4 C 0 1 Y N N -1.228 22.053 7.801 -9.913 3.834 2.269 C4 0YL 20 R47 C5 C5 C 0 1 Y N N 0.113 22.163 7.460 -8.655 3.575 1.762 C5 0YL 21 R47 C6 C6 C 0 1 Y N N 0.566 23.258 6.735 -8.498 2.646 0.735 C6 0YL 22 R47 C18 C18 C 0 1 N N N 9.872 26.063 1.257 2.501 1.341 -0.608 C18 0YL 23 R47 P1 P1 P 0 1 N N N 9.305 25.137 -0.155 2.664 2.912 0.303 P1 0YL 24 R47 O2 O2 O 0 1 N N N 9.597 23.670 -0.007 1.966 4.095 -0.538 O2 0YL 25 R47 O3 O3 O 0 1 N N N 7.825 25.451 -0.303 2.005 2.788 1.622 O3 0YL 26 R47 C19 C19 C 0 1 Y N N 10.170 25.774 -1.574 4.422 3.294 0.539 C19 0YL 27 R47 C20 C20 C 0 1 Y N N 9.445 26.288 -2.650 5.082 2.840 1.665 C20 0YL 28 R47 C21 C21 C 0 1 Y N N 10.064 26.798 -3.802 6.422 3.130 1.845 C21 0YL 29 R47 C22 C22 C 0 1 Y N N 11.450 26.823 -3.964 7.101 3.875 0.898 C22 0YL 30 R47 BR1 BR1 BR 0 0 N N N 12.019 27.409 -5.278 8.933 4.273 1.143 BR1 0YL 31 R47 C23 C23 C 0 1 Y N N 12.195 26.304 -2.880 6.439 4.330 -0.229 C23 0YL 32 R47 C24 C24 C 0 1 Y N N 11.569 25.783 -1.717 5.101 4.034 -0.410 C24 0YL 33 R47 N2 N2 N 0 1 N N N 8.535 27.966 3.459 1.414 -1.438 -0.299 N GLU 34 R47 C26 C26 C 0 1 N N S 8.866 29.117 4.290 1.294 -2.851 -0.670 CA GLU 35 R47 C30 C30 C 0 1 N N N 8.042 29.177 5.564 1.364 -3.703 0.571 C GLU 36 R47 O7 O7 O 0 1 N N N 6.871 28.777 5.585 1.501 -3.182 1.658 O GLU 37 R47 C27 C27 C 0 1 N N N 8.715 30.403 3.474 2.437 -3.230 -1.614 CB GLU 38 R47 C28 C28 C 0 1 N N N 9.772 30.507 2.387 2.294 -2.454 -2.925 CG GLU 39 R47 C29 C29 C 0 1 N N N 9.656 31.768 1.541 3.419 -2.827 -3.855 CD GLU 40 R47 O5 O5 O 0 1 N N N 8.770 31.818 0.666 4.250 -3.631 -3.505 OE1 GLU 41 R47 O6 O6 O 0 1 N N N 10.480 32.693 1.726 3.498 -2.266 -5.072 OE2 GLU 42 R47 N3 N3 N 0 1 N N N 8.644 29.697 6.627 1.274 -5.044 0.473 N GLU 43 R47 C31 C31 C 0 1 N N S 7.902 29.908 7.863 1.342 -5.873 1.679 CA GLU 44 R47 C35 C35 C 0 1 N N N 6.747 30.849 7.643 2.784 -6.140 2.025 C GLU 45 R47 O10 O10 O 0 1 N N N 5.619 30.596 8.099 3.668 -5.682 1.332 O GLU 46 R47 C32 C32 C 0 1 N N N 8.798 30.513 8.928 0.624 -7.201 1.427 CB GLU 47 R47 C33 C33 C 0 1 N N N 9.727 29.539 9.528 -0.866 -6.939 1.198 CG GLU 48 R47 C34 C34 C 0 1 N N N 10.332 30.053 10.807 -1.573 -8.247 0.950 CD GLU 49 R47 O8 O8 O 0 1 N N N 10.509 31.286 10.914 -0.949 -9.282 0.955 OE1 GLU 50 R47 O9 O9 O 0 1 N N N 10.633 29.226 11.693 -2.896 -8.262 0.723 OE2 GLU 51 R47 N4 N4 N 0 1 N N N 7.039 31.952 6.962 3.092 -6.886 3.104 N NH2 52 R47 H10 H10 H 0 1 N N N 8.029 25.961 2.183 0.531 1.135 0.241 H10 0YL 53 R47 H8 H8 H 0 1 N N N 9.026 23.702 2.208 0.541 2.886 -1.572 H8 0YL 54 R47 H9 H9 H 0 1 N N N 9.937 24.240 3.660 0.768 1.586 -2.767 H9 0YL 55 R47 H7 H7 H 0 1 N N N 6.065 25.167 3.459 -1.891 2.898 -0.220 H7 0YL 56 R47 H17 H17 H 0 1 N N N 3.874 24.783 3.902 -3.922 3.297 0.572 H17 0YL 57 R47 H18 H18 H 0 1 N N N 1.527 24.631 4.655 -6.156 3.758 1.487 H18 0YL 58 R47 H5 H5 H 0 1 N N N 2.700 22.068 7.869 -7.857 0.920 -1.238 H5 0YL 59 R47 H6 H6 H 0 1 N N N 5.049 22.199 7.100 -5.624 0.466 -2.159 H6 0YL 60 R47 H1 H1 H 0 1 N N N 0.024 25.053 5.708 -9.496 1.258 -0.567 H1 0YL 61 R47 H2 H2 H 0 1 N N N -3.161 22.967 7.642 -11.997 3.376 2.163 H2 0YL 62 R47 H3 H3 H 0 1 N N N -1.577 21.212 8.381 -10.036 4.558 3.061 H3 0YL 63 R47 H4 H4 H 0 1 N N N 0.808 21.393 7.760 -7.795 4.095 2.158 H4 0YL 64 R47 H12 H12 H 0 1 N N N 10.921 25.794 1.452 3.035 0.555 -0.075 H12 0YL 65 R47 H11 H11 H 0 1 N N N 9.807 27.135 1.020 2.923 1.454 -1.606 H11 0YL 66 R47 H31 H31 H 0 1 N N N 8.783 23.181 -0.032 2.356 4.240 -1.411 H31 0YL 67 R47 H13 H13 H 0 1 N N N 8.366 26.294 -2.594 4.552 2.258 2.404 H13 0YL 68 R47 H14 H14 H 0 1 N N N 9.443 27.187 -4.595 6.938 2.776 2.725 H14 0YL 69 R47 H15 H15 H 0 1 N N N 13.273 26.304 -2.939 6.969 4.912 -0.968 H15 0YL 70 R47 H16 H16 H 0 1 N N N 12.182 25.384 -0.923 4.585 4.389 -1.290 H16 0YL 71 R47 H24 H24 H 0 1 N N N 7.759 28.012 2.831 1.867 -1.189 0.522 H GLU 72 R47 H19 H19 H 0 1 N N N 9.923 29.037 4.584 0.339 -3.015 -1.170 HA GLU 73 R47 H20 H20 H 0 1 N N N 8.811 31.267 4.149 3.390 -2.983 -1.148 HB2 GLU 74 R47 H21 H21 H 0 1 N N N 7.720 30.413 3.005 2.399 -4.299 -1.819 HB3 GLU 75 R47 H23 H23 H 0 1 N N N 9.676 29.634 1.725 1.340 -2.701 -3.391 HG2 GLU 76 R47 H22 H22 H 0 1 N N N 10.763 30.498 2.864 2.331 -1.384 -2.720 HG3 GLU 77 R47 H32 H32 H 0 1 N N N 10.311 33.396 1.110 4.238 -2.537 -5.633 HE2 GLU 78 R47 H25 H25 H 0 1 N N N 9.612 29.945 6.579 1.164 -5.461 -0.396 H GLU 79 R47 H26 H26 H 0 1 N N N 7.514 28.946 8.230 0.860 -5.351 2.506 HA GLU 80 R47 H27 H27 H 0 1 N N N 9.387 31.322 8.471 1.048 -7.681 0.545 HB2 GLU 81 R47 H28 H28 H 0 1 N N N 8.163 30.927 9.725 0.751 -7.852 2.292 HB3 GLU 82 R47 H30 H30 H 0 1 N N N 9.178 28.610 9.743 -1.290 -6.459 2.080 HG2 GLU 83 R47 H29 H29 H 0 1 N N N 10.535 29.330 8.811 -0.993 -6.288 0.334 HG3 GLU 84 R47 H33 H33 H 0 1 N N N 11.007 29.681 12.438 -3.305 -9.125 0.569 HE2 GLU 85 R47 H34 H34 H 0 1 N N N 6.330 32.636 6.791 2.384 -7.252 3.658 HN1 NH2 86 R47 H35 H35 H 0 1 N N N 7.968 32.098 6.621 4.020 -7.058 3.327 HN2 NH2 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R47 BR1 C22 SING N N 1 R47 C22 C21 DOUB Y N 2 R47 C22 C23 SING Y N 3 R47 C21 C20 SING Y N 4 R47 C23 C24 DOUB Y N 5 R47 C20 C19 DOUB Y N 6 R47 C24 C19 SING Y N 7 R47 C19 P1 SING N N 8 R47 O3 P1 DOUB N N 9 R47 P1 O2 SING N N 10 R47 P1 C18 SING N N 11 R47 O5 C29 DOUB N N 12 R47 C18 C17 SING N N 13 R47 C29 O6 SING N N 14 R47 C29 C28 SING N N 15 R47 C28 C27 SING N N 16 R47 C17 C16 SING N N 17 R47 C17 C25 SING N N 18 R47 C16 C15 SING N N 19 R47 N2 C25 SING N N 20 R47 N2 C26 SING N N 21 R47 C27 C26 SING N N 22 R47 C25 O4 DOUB N N 23 R47 C15 C14 DOUB Y N 24 R47 C15 O1 SING Y N 25 R47 C14 C13 SING Y N 26 R47 C26 C30 SING N N 27 R47 C11 C10 DOUB Y N 28 R47 C11 C12 SING Y N 29 R47 O1 N1 SING Y N 30 R47 C13 N1 DOUB Y N 31 R47 C13 C12 SING N N 32 R47 C10 C7 SING Y N 33 R47 C12 C9 DOUB Y N 34 R47 C30 O7 DOUB N N 35 R47 C30 N3 SING N N 36 R47 CL1 C1 SING N N 37 R47 C2 C1 DOUB Y N 38 R47 C2 C6 SING Y N 39 R47 C7 C6 SING N N 40 R47 C7 C8 DOUB Y N 41 R47 C9 C8 SING Y N 42 R47 N3 C31 SING N N 43 R47 C1 C3 SING Y N 44 R47 C6 C5 DOUB Y N 45 R47 N4 C35 SING N N 46 R47 C3 C4 DOUB Y N 47 R47 C5 C4 SING Y N 48 R47 C35 C31 SING N N 49 R47 C35 O10 DOUB N N 50 R47 C31 C32 SING N N 51 R47 C32 C33 SING N N 52 R47 C33 C34 SING N N 53 R47 C34 O8 DOUB N N 54 R47 C34 O9 SING N N 55 R47 C17 H10 SING N N 56 R47 C16 H8 SING N N 57 R47 C16 H9 SING N N 58 R47 C14 H7 SING N N 59 R47 C11 H17 SING N N 60 R47 C10 H18 SING N N 61 R47 C8 H5 SING N N 62 R47 C9 H6 SING N N 63 R47 C2 H1 SING N N 64 R47 C3 H2 SING N N 65 R47 C4 H3 SING N N 66 R47 C5 H4 SING N N 67 R47 C18 H12 SING N N 68 R47 C18 H11 SING N N 69 R47 O2 H31 SING N N 70 R47 C20 H13 SING N N 71 R47 C21 H14 SING N N 72 R47 C23 H15 SING N N 73 R47 C24 H16 SING N N 74 R47 N2 H24 SING N N 75 R47 C26 H19 SING N N 76 R47 C27 H20 SING N N 77 R47 C27 H21 SING N N 78 R47 C28 H23 SING N N 79 R47 C28 H22 SING N N 80 R47 O6 H32 SING N N 81 R47 N3 H25 SING N N 82 R47 C31 H26 SING N N 83 R47 C32 H27 SING N N 84 R47 C32 H28 SING N N 85 R47 C33 H30 SING N N 86 R47 C33 H29 SING N N 87 R47 O9 H33 SING N N 88 R47 N4 H34 SING N N 89 R47 N4 H35 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R47 SMILES ACDLabs 12.01 "O=C(O)CCC(C(=O)N)NC(=O)C(NC(=O)C(CP(=O)(O)c1ccc(Br)cc1)Cc4onc(c3ccc(c2cccc(Cl)c2)cc3)c4)CCC(=O)O" R47 InChI InChI 1.03 "InChI=1S/C35H35BrClN4O10P/c36-24-8-10-27(11-9-24)52(49,50)19-23(34(47)40-29(13-15-32(44)45)35(48)39-28(33(38)46)12-14-31(42)43)17-26-18-30(41-51-26)21-6-4-20(5-7-21)22-2-1-3-25(37)16-22/h1-11,16,18,23,28-29H,12-15,17,19H2,(H2,38,46)(H,39,48)(H,40,47)(H,42,43)(H,44,45)(H,49,50)/t23-,28+,29+/m1/s1" R47 InChIKey InChI 1.03 PTUCPHGSAFOJAU-MGONOCMRSA-N R47 SMILES_CANONICAL CACTVS 3.370 "NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4" R47 SMILES CACTVS 3.370 "NC(=O)[CH](CCC(O)=O)NC(=O)[CH](CCC(O)=O)NC(=O)[CH](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4" R47 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)Cl)c2ccc(cc2)c3cc(on3)C[C@H](CP(=O)(c4ccc(cc4)Br)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N" R47 SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)Cl)c2ccc(cc2)c3cc(on3)CC(CP(=O)(c4ccc(cc4)Br)O)C(=O)NC(CCC(=O)O)C(=O)NC(CCC(=O)O)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R47 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alpha-glutamyl-L-alpha-glutamine" R47 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S)-5-azanyl-4-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-oxidanyl-phosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-5-oxidanylidene-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R47 "Create component" 2012-09-14 RCSB R47 "Initial release" 2013-02-01 RCSB R47 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R47 _pdbx_chem_comp_synonyms.name RXP470.1 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##