data_R4B # _chem_comp.id R4B _chem_comp.name ;N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a lanyl-L-alaninamide ; _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H31 Br Cl N4 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms RXP470B _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 701.932 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R4B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GR0 _chem_comp.pdbx_subcomponent_list "0YL ALA ALA NH2" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R4B O4 O4 O 0 1 N N N -9.601 26.045 -4.733 -0.508 1.600 -2.331 O4 0YL 1 R4B N1 N1 N 0 1 Y N N -6.120 22.270 -5.868 2.755 -0.044 -2.474 N1 0YL 2 R4B O1 O1 O 0 1 Y N N -7.227 22.558 -5.198 1.569 -0.013 -2.709 O1 0YL 3 R4B C25 C25 C 0 1 N N N -8.642 26.365 -4.005 -1.088 1.357 -1.294 C25 0YL 4 R4B C17 C17 C 0 1 N N S -8.198 25.457 -2.902 -1.261 -0.071 -0.845 C17 0YL 5 R4B C16 C16 C 0 1 N N N -8.251 24.043 -3.452 -0.617 -1.010 -1.868 C16 0YL 6 R4B C14 C14 C 0 1 Y N N -5.758 23.973 -4.425 1.774 -1.366 -1.037 C14 0YL 7 R4B C13 C13 C 0 1 Y N N -5.190 23.135 -5.402 3.023 -0.838 -1.467 C13 0YL 8 R4B C12 C12 C 0 1 Y N N -3.788 23.105 -5.885 4.360 -1.129 -0.893 C12 0YL 9 R4B C11 C11 C 0 1 Y N N -3.443 22.252 -6.928 4.480 -2.009 0.183 C11 0YL 10 R4B C10 C10 C 0 1 Y N N -2.119 22.203 -7.368 5.720 -2.279 0.717 C10 0YL 11 R4B C7 C7 C 0 1 Y N N -1.165 23.002 -6.743 6.857 -1.673 0.182 C7 0YL 12 R4B C8 C8 C 0 1 Y N N -1.521 23.826 -5.681 6.737 -0.794 -0.894 C8 0YL 13 R4B C9 C9 C 0 1 Y N N -2.833 23.878 -5.241 5.496 -0.528 -1.431 C9 0YL 14 R4B C15 C15 C 0 1 Y N N -7.093 23.579 -4.314 0.875 -0.799 -1.873 C15 0YL 15 R4B CL1 CL1 CL 0 0 N N N 3.199 20.470 -8.322 11.989 -0.882 0.102 CL1 0YL 16 R4B C1 C1 C 0 1 Y N N 2.314 21.938 -7.804 10.571 -1.633 0.764 C1 0YL 17 R4B C2 C2 C 0 1 Y N N 0.953 21.860 -7.500 9.329 -1.359 0.224 C2 0YL 18 R4B C3 C3 C 0 1 Y N N 2.998 23.144 -7.706 10.687 -2.510 1.829 C3 0YL 19 R4B C4 C4 C 0 1 Y N N 2.328 24.290 -7.303 9.561 -3.112 2.361 C4 0YL 20 R4B C5 C5 C 0 1 Y N N 0.974 24.216 -7.003 8.315 -2.841 1.833 C5 0YL 21 R4B C6 C6 C 0 1 Y N N 0.280 23.012 -7.118 8.193 -1.963 0.757 C6 0YL 22 R4B C18 C18 C 0 1 N N N -9.253 25.559 -1.801 -2.752 -0.392 -0.726 C18 0YL 23 R4B P1 P1 P 0 1 N N N -8.764 24.848 -0.202 -2.971 -1.907 0.264 P1 0YL 24 R4B O2 O2 O 0 1 N N N -7.326 25.237 0.062 -2.414 -1.660 1.754 O2 0YL 25 R4B O3 O3 O 0 1 N N N -9.067 23.373 -0.197 -2.222 -3.019 -0.364 O3 0YL 26 R4B C19 C19 C 0 1 Y N N -9.778 25.593 1.006 -4.733 -2.332 0.339 C19 0YL 27 R4B C20 C20 C 0 1 Y N N -9.211 25.949 2.218 -5.286 -3.157 -0.622 C20 0YL 28 R4B C21 C21 C 0 1 Y N N -10.000 26.534 3.203 -6.629 -3.480 -0.566 C21 0YL 29 R4B C22 C22 C 0 1 Y N N -11.347 26.744 2.964 -7.419 -2.978 0.453 C22 0YL 30 R4B BR1 BR1 BR 0 0 N N N -12.374 27.544 4.351 -9.255 -3.421 0.532 BR1 0YL 31 R4B C23 C23 C 0 1 Y N N -11.921 26.372 1.750 -6.864 -2.152 1.415 C23 0YL 32 R4B C24 C24 C 0 1 Y N N -11.134 25.794 0.756 -5.520 -1.834 1.360 C24 0YL 33 R4B N2 N2 N 0 1 N N N -7.981 27.501 -4.161 -1.579 2.363 -0.545 N ALA 34 R4B C26 C26 C 0 1 N N S -8.469 28.501 -5.106 -1.412 3.751 -0.982 CA ALA 35 R4B C30 C30 C 0 1 N N N -7.764 28.438 -6.461 -1.461 4.665 0.216 C ALA 36 R4B O7 O7 O 0 1 N N N -6.602 28.025 -6.558 -1.620 4.202 1.325 O ALA 37 R4B C27 C27 C 0 1 N N N -8.356 29.892 -4.507 -2.537 4.120 -1.951 CB ALA 38 R4B N3 N3 N 0 1 N N N -8.474 28.834 -7.512 -1.328 5.996 0.054 N ALA 39 R4B C31 C31 C 0 1 N N S -7.846 28.979 -8.815 -1.376 6.884 1.218 CA ALA 40 R4B C35 C35 C 0 1 N N N -6.769 30.060 -8.719 -1.816 8.258 0.784 C ALA 41 R4B O10 O10 O 0 1 N N N -5.602 29.827 -9.049 -2.065 8.475 -0.383 O ALA 42 R4B C32 C32 C 0 1 N N N -8.885 29.338 -9.875 0.014 6.970 1.852 CB ALA 43 R4B N4 N4 N 0 1 N N N -7.165 31.238 -8.245 -1.933 9.247 1.693 N NH2 44 R4B H1 H1 H 0 1 N N N -7.195 25.714 -2.530 -0.781 -0.207 0.125 H10 0YL 45 R4B H2 H2 H 0 1 N N N -9.165 23.960 -4.058 -0.837 -2.043 -1.601 H8 0YL 46 R4B H3 H3 H 0 1 N N N -8.316 23.359 -2.593 -1.018 -0.796 -2.859 H9 0YL 47 R4B H4 H4 H 0 1 N N N -5.263 24.759 -3.874 1.587 -2.058 -0.229 H7 0YL 48 R4B H5 H5 H 0 1 N N N -4.194 21.632 -7.394 3.600 -2.478 0.597 H17 0YL 49 R4B H6 H6 H 0 1 N N N -1.838 21.553 -8.183 5.813 -2.960 1.550 H18 0YL 50 R4B H7 H7 H 0 1 N N N -0.769 24.430 -5.196 7.617 -0.324 -1.309 H5 0YL 51 R4B H8 H8 H 0 1 N N N -3.108 24.510 -4.410 5.404 0.150 -2.267 H6 0YL 52 R4B H9 H9 H 0 1 N N N 0.432 20.916 -7.561 9.240 -0.678 -0.609 H1 0YL 53 R4B H10 H10 H 0 1 N N N 4.051 23.189 -7.943 11.660 -2.725 2.245 H2 0YL 54 R4B H11 H11 H 0 1 N N N 2.854 25.230 -7.223 9.657 -3.796 3.191 H3 0YL 55 R4B H12 H12 H 0 1 N N N 0.452 25.103 -6.676 7.437 -3.312 2.249 H4 0YL 56 R4B H13 H13 H 0 1 N N N -9.482 26.624 -1.645 -3.264 0.437 -0.239 H12 0YL 57 R4B H14 H14 H 0 1 N N N -10.157 25.036 -2.145 -3.171 -0.544 -1.721 H11 0YL 58 R4B H15 H15 H 0 1 N N N -6.805 24.454 0.198 -2.860 -0.943 2.227 H31 0YL 59 R4B H16 H16 H 0 1 N N N -8.161 25.773 2.398 -4.670 -3.548 -1.418 H13 0YL 60 R4B H17 H17 H 0 1 N N N -9.564 26.822 4.148 -7.062 -4.124 -1.317 H14 0YL 61 R4B H18 H18 H 0 1 N N N -12.975 26.532 1.580 -7.481 -1.760 2.210 H15 0YL 62 R4B H19 H19 H 0 1 N N N -11.567 25.507 -0.191 -5.086 -1.193 2.114 H16 0YL 63 R4B H20 H20 H 0 1 N N N -7.150 27.674 -3.633 -2.044 2.168 0.285 H ALA 64 R4B H21 H21 H 0 1 N N N -9.537 28.308 -5.286 -0.450 3.861 -1.483 HA ALA 65 R4B H22 H22 H 0 1 N N N -8.869 29.916 -3.534 -2.412 5.153 -2.276 HB1 ALA 66 R4B H23 H23 H 0 1 N N N -7.295 30.146 -4.368 -2.501 3.460 -2.817 HB2 ALA 67 R4B H24 H24 H 0 1 N N N -8.822 30.622 -5.185 -3.498 4.011 -1.450 HB3 ALA 68 R4B H25 H25 H 0 1 N N N -9.448 29.034 -7.406 -1.200 6.366 -0.833 H ALA 69 R4B H26 H26 H 0 1 N N N -7.367 28.031 -9.101 -2.083 6.489 1.947 HA ALA 70 R4B H27 H27 H 0 1 N N N -9.647 28.547 -9.925 0.722 7.365 1.122 HB1 ALA 71 R4B H28 H28 H 0 1 N N N -9.364 30.292 -9.610 -0.021 7.630 2.718 HB2 ALA 72 R4B H29 H29 H 0 1 N N N -8.392 29.434 -10.854 0.333 5.976 2.165 HB3 ALA 73 R4B H30 H30 H 0 1 N N N -6.506 31.983 -8.143 -1.733 9.074 2.626 HN1 NH2 74 R4B H31 H31 H 0 1 N N N -8.122 31.379 -7.991 -2.216 10.131 1.413 HN2 NH2 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R4B C32 C31 SING N N 1 R4B O10 C35 DOUB N N 2 R4B C31 C35 SING N N 3 R4B C31 N3 SING N N 4 R4B C35 N4 SING N N 5 R4B CL1 C1 SING N N 6 R4B C1 C3 DOUB Y N 7 R4B C1 C2 SING Y N 8 R4B C3 C4 SING Y N 9 R4B N3 C30 SING N N 10 R4B C2 C6 DOUB Y N 11 R4B C10 C11 DOUB Y N 12 R4B C10 C7 SING Y N 13 R4B C4 C5 DOUB Y N 14 R4B C6 C5 SING Y N 15 R4B C6 C7 SING N N 16 R4B C11 C12 SING Y N 17 R4B C7 C8 DOUB Y N 18 R4B O7 C30 DOUB N N 19 R4B C30 C26 SING N N 20 R4B C12 C13 SING N N 21 R4B C12 C9 DOUB Y N 22 R4B N1 C13 DOUB Y N 23 R4B N1 O1 SING Y N 24 R4B C8 C9 SING Y N 25 R4B C13 C14 SING Y N 26 R4B O1 C15 SING Y N 27 R4B C26 C27 SING N N 28 R4B C26 N2 SING N N 29 R4B O4 C25 DOUB N N 30 R4B C14 C15 DOUB Y N 31 R4B C15 C16 SING N N 32 R4B N2 C25 SING N N 33 R4B C25 C17 SING N N 34 R4B C16 C17 SING N N 35 R4B C17 C18 SING N N 36 R4B C18 P1 SING N N 37 R4B P1 O3 DOUB N N 38 R4B P1 O2 SING N N 39 R4B P1 C19 SING N N 40 R4B C24 C19 DOUB Y N 41 R4B C24 C23 SING Y N 42 R4B C19 C20 SING Y N 43 R4B C23 C22 DOUB Y N 44 R4B C20 C21 DOUB Y N 45 R4B C22 C21 SING Y N 46 R4B C22 BR1 SING N N 47 R4B C17 H1 SING N N 48 R4B C16 H2 SING N N 49 R4B C16 H3 SING N N 50 R4B C14 H4 SING N N 51 R4B C11 H5 SING N N 52 R4B C10 H6 SING N N 53 R4B C8 H7 SING N N 54 R4B C9 H8 SING N N 55 R4B C2 H9 SING N N 56 R4B C3 H10 SING N N 57 R4B C4 H11 SING N N 58 R4B C5 H12 SING N N 59 R4B C18 H13 SING N N 60 R4B C18 H14 SING N N 61 R4B O2 H15 SING N N 62 R4B C20 H16 SING N N 63 R4B C21 H17 SING N N 64 R4B C23 H18 SING N N 65 R4B C24 H19 SING N N 66 R4B N2 H20 SING N N 67 R4B C26 H21 SING N N 68 R4B C27 H22 SING N N 69 R4B C27 H23 SING N N 70 R4B C27 H24 SING N N 71 R4B N3 H25 SING N N 72 R4B C31 H26 SING N N 73 R4B C32 H27 SING N N 74 R4B C32 H28 SING N N 75 R4B C32 H29 SING N N 76 R4B N4 H30 SING N N 77 R4B N4 H31 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R4B SMILES ACDLabs 12.01 "O=C(N)C(NC(=O)C(NC(=O)C(CP(=O)(O)c1ccc(Br)cc1)Cc4onc(c3ccc(c2cccc(Cl)c2)cc3)c4)C)C" R4B InChI InChI 1.03 "InChI=1S/C31H31BrClN4O6P/c1-18(29(34)38)35-30(39)19(2)36-31(40)23(17-44(41,42)27-12-10-24(32)11-13-27)15-26-16-28(37-43-26)21-8-6-20(7-9-21)22-4-3-5-25(33)14-22/h3-14,16,18-19,23H,15,17H2,1-2H3,(H2,34,38)(H,35,39)(H,36,40)(H,41,42)/t18-,19-,23+/m0/s1" R4B InChIKey InChI 1.03 LIUMDGLYGBIKBM-SFYKDHMMSA-N R4B SMILES_CANONICAL CACTVS 3.370 "C[C@H](NC(=O)[C@H](C)NC(=O)[C@H](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4)C(N)=O" R4B SMILES CACTVS 3.370 "C[CH](NC(=O)[CH](C)NC(=O)[CH](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4)C(N)=O" R4B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N)NC(=O)[C@H](C)NC(=O)[C@H](Cc1cc(no1)c2ccc(cc2)c3cccc(c3)Cl)CP(=O)(c4ccc(cc4)Br)O" R4B SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)N)NC(=O)C(C)NC(=O)C(Cc1cc(no1)c2ccc(cc2)c3cccc(c3)Cl)CP(=O)(c4ccc(cc4)Br)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R4B "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alanyl-L-alaninamide" R4B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S)-3-[[(2S)-1-[[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-2-[[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]methyl]-3-oxidanylidene-propyl]-(4-bromophenyl)phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R4B "Create component" 2012-10-04 RCSB R4B "Initial release" 2013-02-01 RCSB R4B "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R4B _pdbx_chem_comp_synonyms.name RXP470B _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##