data_R4F # _chem_comp.id R4F _chem_comp.name " 1-(2-methylprop-2-enoyl)-1H-indole-3-carbaldehyde, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 215.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DC6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R4F C13 C1 C 0 1 Y N N N N N -4.346 17.257 -7.082 -3.287 -1.754 0.084 C13 R4F 1 R4F C15 C2 C 0 1 Y N N N N N -3.237 17.151 -9.220 -0.926 -2.189 0.038 C15 R4F 2 R4F O01 O1 O 0 1 N N N N N N -2.555 16.533 -12.056 1.896 -1.795 -0.045 O01 R4F 3 R4F C02 C3 C 0 1 N N N N N N -3.584 15.891 -12.154 1.740 -0.597 -0.078 C02 R4F 4 R4F C03 C4 C 0 1 N N N N N N -3.938 15.191 -13.461 2.937 0.317 -0.136 C03 R4F 5 R4F C04 C5 C 0 1 N N N N N N -3.404 13.764 -13.462 3.378 0.671 1.286 C04 R4F 6 R4F C05 C6 C 0 1 N N N N N N -3.406 15.944 -14.684 4.082 -0.387 -0.865 C05 R4F 7 R4F N06 N1 N 0 1 Y N N N N N -4.461 15.793 -10.983 0.496 -0.079 -0.062 N06 R4F 8 R4F C07 C7 C 0 1 Y N N N N N -5.704 15.067 -10.950 0.206 1.250 -0.097 C07 R4F 9 R4F C08 C8 C 0 1 Y N N N N N -6.278 15.183 -9.680 -1.147 1.426 -0.059 C08 R4F 10 R4F C09 C9 C 0 1 N N N N N N -7.562 14.565 -9.286 -1.863 2.701 -0.078 C09 R4F 11 R4F O10 O2 O 0 1 N N N N N N -7.713 13.980 -8.223 -1.244 3.744 -0.132 O10 R4F 12 R4F C11 C10 C 0 1 Y N N N N N -5.380 16.006 -8.877 -1.747 0.077 -0.006 C11 R4F 13 R4F C12 C11 C 0 1 Y N N N N N -5.394 16.471 -7.556 -3.054 -0.396 0.041 C12 R4F 14 R4F C14 C12 C 0 1 Y N N N N N -3.270 17.595 -7.913 -2.226 -2.646 0.085 C14 R4F 15 R4F C16 C13 C 0 1 Y N N N N N -4.291 16.359 -9.694 -0.672 -0.824 -0.010 C16 R4F 16 R4F H1 H1 H 0 1 N N N N N N -4.363 17.610 -6.061 -4.301 -2.125 0.121 H1 R4F 17 R4F H2 H2 H 0 1 N N N N N N -2.412 17.410 -9.867 -0.105 -2.891 0.040 H2 R4F 18 R4F H3 H3 H 0 1 N N N N N N -5.034 15.146 -13.539 2.671 1.229 -0.671 H3 R4F 19 R4F H4 H4 H 0 1 N N N N N N -3.789 13.227 -12.582 3.643 -0.240 1.821 H4 R4F 20 R4F H5 H5 H 0 1 N N N N N N -3.733 13.250 -14.377 4.243 1.333 1.244 H5 R4F 21 R4F H6 H6 H 0 1 N N N N N N -2.305 13.784 -13.428 2.561 1.173 1.805 H6 R4F 22 R4F H7 H7 H 0 1 N N N N N N -3.794 16.973 -14.679 3.768 -0.639 -1.878 H7 R4F 23 R4F H8 H8 H 0 1 N N N N N N -2.307 15.967 -14.651 4.948 0.274 -0.907 H8 R4F 24 R4F H9 H9 H 0 1 N N N N N N -3.735 15.433 -15.601 4.348 -1.299 -0.329 H9 R4F 25 R4F H10 H10 H 0 1 N N N N N N -6.128 14.518 -11.778 0.936 2.045 -0.139 H10 R4F 26 R4F H11 H11 H 0 1 N N N N N N -8.400 14.633 -9.964 -2.942 2.714 -0.044 H11 R4F 27 R4F H12 H12 H 0 1 N N N N N N -6.218 16.220 -6.904 -3.882 0.298 0.044 H12 R4F 28 R4F H13 H13 H 0 1 N N N N N N -2.464 18.204 -7.530 -2.419 -3.708 0.123 H13 R4F 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R4F C05 C03 SING N N 1 R4F C04 C03 SING N N 2 R4F C03 C02 SING N N 3 R4F C02 O01 DOUB N N 4 R4F C02 N06 SING N N 5 R4F N06 C07 SING Y N 6 R4F N06 C16 SING Y N 7 R4F C07 C08 DOUB Y N 8 R4F C16 C15 DOUB Y N 9 R4F C16 C11 SING Y N 10 R4F C08 C09 SING N N 11 R4F C08 C11 SING Y N 12 R4F C09 O10 DOUB N N 13 R4F C15 C14 SING Y N 14 R4F C11 C12 DOUB Y N 15 R4F C14 C13 DOUB Y N 16 R4F C12 C13 SING Y N 17 R4F C13 H1 SING N N 18 R4F C15 H2 SING N N 19 R4F C03 H3 SING N N 20 R4F C04 H4 SING N N 21 R4F C04 H5 SING N N 22 R4F C04 H6 SING N N 23 R4F C05 H7 SING N N 24 R4F C05 H8 SING N N 25 R4F C05 H9 SING N N 26 R4F C07 H10 SING N N 27 R4F C09 H11 SING N N 28 R4F C12 H12 SING N N 29 R4F C14 H13 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R4F SMILES ACDLabs 12.01 "CC(C)C(=O)n1cc(C=O)c2ccccc21" R4F InChI InChI 1.03 "InChI=1S/C13H13NO2/c1-9(2)13(16)14-7-10(8-15)11-5-3-4-6-12(11)14/h3-9H,1-2H3" R4F InChIKey InChI 1.03 GAZDTEOBGBWWLL-UHFFFAOYSA-N R4F SMILES_CANONICAL CACTVS 3.385 "CC(C)C(=O)n1cc(C=O)c2ccccc12" R4F SMILES CACTVS 3.385 "CC(C)C(=O)n1cc(C=O)c2ccccc12" R4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2)C=O" R4F SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2)C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R4F "SYSTEMATIC NAME" ACDLabs 12.01 "1-(2-methylpropanoyl)-1H-indole-3-carbaldehyde" R4F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(2-methylpropanoyl)indole-3-carbaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R4F "Create component" 2022-06-16 RCSB R4F "Modify name" 2022-06-16 RCSB R4F "Initial release" 2022-10-12 RCSB R4F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R4F _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C05 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #