data_R4I # _chem_comp.id R4I _chem_comp.name "(8~{S})-6-[2-(2,3-dihydroindol-1-yl)-2-oxidanylidene-ethyl]-4-(4-methylphenyl)-2-oxidanylidene-8-propyl-1,5,7,8-tetrahydro-1,6-naphthyridine-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H30 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2022-12-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R4I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R4I C5 C1 C 0 1 N N N -55.694 22.176 -34.949 4.487 -1.075 -0.430 C5 R4I 1 R4I C6 C2 C 0 1 N N N -56.280 22.536 -36.144 4.060 0.269 -0.289 C6 R4I 2 R4I C7 C3 C 0 1 N N S -56.531 18.551 -34.796 1.303 -2.973 -0.735 C7 R4I 3 R4I C8 C4 C 0 1 N N N -56.444 17.539 -35.927 -0.087 -2.492 -1.149 C8 R4I 4 R4I C10 C5 C 0 1 N N N -57.780 19.203 -37.280 0.303 -0.210 -0.488 C10 R4I 5 R4I C13 C6 C 0 1 N N N -59.938 17.015 -33.863 2.472 -5.055 2.286 C13 R4I 6 R4I C15 C7 C 0 1 N N N -56.166 23.891 -36.551 5.010 1.328 -0.130 C15 R4I 7 R4I C17 C8 C 0 1 Y N N -57.536 21.945 -38.117 2.188 1.923 -0.165 C17 R4I 8 R4I C20 C9 C 0 1 Y N N -58.614 22.673 -40.572 1.262 4.519 0.103 C20 R4I 9 R4I C21 C10 C 0 1 Y N N -59.362 21.951 -39.662 2.011 4.166 -1.006 C21 R4I 10 R4I C22 C11 C 0 1 Y N N -58.828 21.587 -38.436 2.475 2.874 -1.146 C22 R4I 11 R4I C24 C12 C 0 1 N N N -56.715 17.334 -38.285 -1.931 -1.129 -0.364 C24 R4I 12 R4I C28 C13 C 0 1 N N N -58.919 16.520 -41.313 -4.170 1.140 1.820 C28 R4I 13 R4I C29 C14 C 0 1 N N N -58.351 16.732 -42.696 -5.664 1.286 1.488 C29 R4I 14 R4I C30 C15 C 0 1 Y N N -56.867 16.568 -42.452 -5.872 0.411 0.272 C30 R4I 15 R4I C35 C16 C 0 1 Y N N -55.826 16.406 -43.338 -7.006 0.145 -0.470 C35 R4I 16 R4I C34 C17 C 0 1 Y N N -54.534 16.278 -42.876 -6.941 -0.705 -1.558 C34 R4I 17 R4I C33 C18 C 0 1 Y N N -54.291 16.311 -41.521 -5.736 -1.290 -1.903 C33 R4I 18 R4I C32 C19 C 0 1 Y N N -55.336 16.470 -40.630 -4.602 -1.029 -1.164 C32 R4I 19 R4I C31 C20 C 0 1 Y N N -56.624 16.602 -41.090 -4.660 -0.171 -0.064 C31 R4I 20 R4I N27 N1 N 0 1 N N N -57.765 16.760 -40.450 -3.639 0.223 0.807 N27 R4I 21 R4I C25 C21 C 0 1 N N N -57.888 17.082 -39.182 -2.356 -0.181 0.727 C25 R4I 22 R4I O26 O1 O 0 1 N N N -59.004 17.201 -38.699 -1.543 0.220 1.533 O26 R4I 23 R4I N9 N2 N 0 1 N N N -57.327 17.824 -37.053 -0.496 -1.413 -0.234 N9 R4I 24 R4I C11 C22 C 0 1 N N N -57.761 18.414 -33.921 1.206 -3.715 0.600 C11 R4I 25 R4I C12 C23 C 0 1 N N N -58.416 17.030 -34.094 2.569 -4.313 0.951 C12 R4I 26 R4I C2 C24 C 0 1 N N N -57.042 20.274 -36.482 1.774 -0.534 -0.468 C2 R4I 27 R4I C3 C25 C 0 1 N N N -56.450 19.954 -35.287 2.237 -1.796 -0.586 C3 R4I 28 R4I N4 N3 N 0 1 N N N -55.783 20.877 -34.516 3.577 -2.051 -0.575 N4 R4I 29 R4I O14 O2 O 0 1 N N N -55.097 22.989 -34.250 5.677 -1.342 -0.425 O14 R4I 30 R4I N16 N4 N 0 1 N N N -56.075 24.972 -36.874 5.764 2.168 -0.004 N16 R4I 31 R4I C1 C26 C 0 1 N N N -56.956 21.593 -36.908 2.683 0.536 -0.308 C1 R4I 32 R4I C18 C27 C 0 1 Y N N -56.793 22.655 -39.037 1.438 2.287 0.954 C18 R4I 33 R4I C19 C28 C 0 1 Y N N -57.324 23.026 -40.257 0.979 3.582 1.081 C19 R4I 34 R4I C23 C29 C 0 1 N N N -59.198 23.079 -41.916 0.758 5.932 0.249 C23 R4I 35 R4I H2 H2 H 0 1 N N N -55.658 18.382 -34.149 1.692 -3.648 -1.497 H2 R4I 36 R4I H3 H3 H 0 1 N N N -56.706 16.549 -35.525 -0.055 -2.114 -2.171 H3 R4I 37 R4I H4 H4 H 0 1 N N N -55.408 17.523 -36.296 -0.796 -3.317 -1.085 H4 R4I 38 R4I H5 H5 H 0 1 N N N -57.655 19.430 -38.349 0.038 0.197 -1.464 H5 R4I 39 R4I H6 H6 H 0 1 N N N -58.846 19.258 -37.016 0.087 0.532 0.281 H6 R4I 40 R4I H7 H7 H 0 1 N N N -60.321 15.994 -34.006 1.735 -5.854 2.204 H7 R4I 41 R4I H8 H8 H 0 1 N N N -60.156 17.348 -32.838 3.444 -5.481 2.536 H8 R4I 42 R4I H9 H9 H 0 1 N N N -60.424 17.693 -34.580 2.169 -4.359 3.067 H9 R4I 43 R4I H10 H10 H 0 1 N N N -60.374 21.667 -39.909 2.228 4.902 -1.766 H10 R4I 44 R4I H11 H11 H 0 1 N N N -59.423 21.024 -37.732 3.059 2.600 -2.011 H11 R4I 45 R4I H12 H12 H 0 1 N N N -56.153 16.406 -38.103 -2.495 -2.058 -0.277 H12 R4I 46 R4I H13 H13 H 0 1 N N N -56.044 18.090 -38.718 -2.126 -0.676 -1.336 H13 R4I 47 R4I H14 H14 H 0 1 N N N -59.727 17.236 -41.102 -3.672 2.107 1.753 H14 R4I 48 R4I H15 H15 H 0 1 N N N -59.297 15.494 -41.193 -4.042 0.718 2.816 H15 R4I 49 R4I H16 H16 H 0 1 N N N -58.585 17.738 -43.075 -6.274 0.932 2.319 H16 R4I 50 R4I H17 H17 H 0 1 N N N -58.726 15.977 -43.403 -5.903 2.323 1.255 H17 R4I 51 R4I H18 H18 H 0 1 N N N -56.023 16.379 -44.400 -7.946 0.603 -0.200 H18 R4I 52 R4I H19 H19 H 0 1 N N N -53.718 16.153 -43.572 -7.828 -0.911 -2.138 H19 R4I 53 R4I H20 H20 H 0 1 N N N -53.280 16.212 -41.153 -5.684 -1.955 -2.752 H20 R4I 54 R4I H21 H21 H 0 1 N N N -55.139 16.491 -39.568 -3.664 -1.489 -1.438 H21 R4I 55 R4I H23 H23 H 0 1 N N N -57.469 18.544 -32.868 0.902 -3.018 1.381 H23 R4I 56 R4I H24 H24 H 0 1 N N N -58.487 19.192 -34.199 0.469 -4.513 0.518 H24 R4I 57 R4I H25 H25 H 0 1 N N N -58.220 16.682 -35.119 3.307 -3.514 1.032 H25 R4I 58 R4I H26 H26 H 0 1 N N N -57.952 16.337 -33.376 2.873 -5.009 0.169 H26 R4I 59 R4I H27 H27 H 0 1 N N N -55.775 22.926 -38.799 1.216 1.557 1.718 H27 R4I 60 R4I H28 H28 H 0 1 N N N -56.729 23.590 -40.959 0.395 3.865 1.944 H28 R4I 61 R4I H29 H29 H 0 1 N N N -58.994 22.293 -42.658 1.500 6.529 0.779 H29 R4I 62 R4I H30 H30 H 0 1 N N N -60.285 23.217 -41.817 0.586 6.360 -0.739 H30 R4I 63 R4I H31 H31 H 0 1 N N N -58.738 24.022 -42.246 -0.176 5.928 0.811 H31 R4I 64 R4I H1 H1 H 0 1 N N N -55.367 20.604 -33.649 3.882 -2.967 -0.674 H1 R4I 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R4I C35 C34 DOUB Y N 1 R4I C35 C30 SING Y N 2 R4I C34 C33 SING Y N 3 R4I C29 C30 SING N N 4 R4I C29 C28 SING N N 5 R4I C30 C31 DOUB Y N 6 R4I C23 C20 SING N N 7 R4I C33 C32 DOUB Y N 8 R4I C28 N27 SING N N 9 R4I C31 C32 SING Y N 10 R4I C31 N27 SING N N 11 R4I C20 C19 DOUB Y N 12 R4I C20 C21 SING Y N 13 R4I N27 C25 SING N N 14 R4I C19 C18 SING Y N 15 R4I C21 C22 DOUB Y N 16 R4I C25 O26 DOUB N N 17 R4I C25 C24 SING N N 18 R4I C18 C17 DOUB Y N 19 R4I C22 C17 SING Y N 20 R4I C24 N9 SING N N 21 R4I C17 C1 SING N N 22 R4I C10 N9 SING N N 23 R4I C10 C2 SING N N 24 R4I N9 C8 SING N N 25 R4I C1 C2 SING N N 26 R4I C1 C6 DOUB N N 27 R4I N16 C15 TRIP N N 28 R4I C15 C6 SING N N 29 R4I C2 C3 DOUB N N 30 R4I C6 C5 SING N N 31 R4I C8 C7 SING N N 32 R4I C3 C7 SING N N 33 R4I C3 N4 SING N N 34 R4I C5 N4 SING N N 35 R4I C5 O14 DOUB N N 36 R4I C7 C11 SING N N 37 R4I C12 C11 SING N N 38 R4I C12 C13 SING N N 39 R4I C7 H2 SING N N 40 R4I C8 H3 SING N N 41 R4I C8 H4 SING N N 42 R4I C10 H5 SING N N 43 R4I C10 H6 SING N N 44 R4I C13 H7 SING N N 45 R4I C13 H8 SING N N 46 R4I C13 H9 SING N N 47 R4I C21 H10 SING N N 48 R4I C22 H11 SING N N 49 R4I C24 H12 SING N N 50 R4I C24 H13 SING N N 51 R4I C28 H14 SING N N 52 R4I C28 H15 SING N N 53 R4I C29 H16 SING N N 54 R4I C29 H17 SING N N 55 R4I C35 H18 SING N N 56 R4I C34 H19 SING N N 57 R4I C33 H20 SING N N 58 R4I C32 H21 SING N N 59 R4I C11 H23 SING N N 60 R4I C11 H24 SING N N 61 R4I C12 H25 SING N N 62 R4I C12 H26 SING N N 63 R4I C18 H27 SING N N 64 R4I C19 H28 SING N N 65 R4I C23 H29 SING N N 66 R4I C23 H30 SING N N 67 R4I C23 H31 SING N N 68 R4I N4 H1 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R4I InChI InChI 1.06 "InChI=1S/C29H30N4O2/c1-3-6-22-16-32(18-26(34)33-14-13-20-7-4-5-8-25(20)33)17-24-27(21-11-9-19(2)10-12-21)23(15-30)29(35)31-28(22)24/h4-5,7-12,22H,3,6,13-14,16-18H2,1-2H3,(H,31,35)/t22-/m0/s1" R4I InChIKey InChI 1.06 TVUOEVCKUGISBU-QFIPXVFZSA-N R4I SMILES_CANONICAL CACTVS 3.385 "CCC[C@H]1CN(CC(=O)N2CCc3ccccc23)CC4=C1NC(=O)C(=C4c5ccc(C)cc5)C#N" R4I SMILES CACTVS 3.385 "CCC[CH]1CN(CC(=O)N2CCc3ccccc23)CC4=C1NC(=O)C(=C4c5ccc(C)cc5)C#N" R4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@H]1CN(CC2=C1NC(=O)C(=C2c3ccc(cc3)C)C#N)CC(=O)N4CCc5c4cccc5" R4I SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1CN(CC2=C1NC(=O)C(=C2c3ccc(cc3)C)C#N)CC(=O)N4CCc5c4cccc5" # _pdbx_chem_comp_identifier.comp_id R4I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(8~{S})-6-[2-(2,3-dihydroindol-1-yl)-2-oxidanylidene-ethyl]-4-(4-methylphenyl)-2-oxidanylidene-8-propyl-1,5,7,8-tetrahydro-1,6-naphthyridine-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R4I "Create component" 2022-11-23 PDBE R4I "Initial release" 2022-12-28 RCSB R4I "Modify aromatic_flag" 2022-12-29 PDBE #