data_R4J # _chem_comp.id R4J _chem_comp.name "[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 Cl2 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-29 _chem_comp.pdbx_modified_date 2020-04-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R4J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VN6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R4J C2 C1 C 0 1 Y N N 26.654 -2.079 27.441 -1.946 -3.100 1.312 C2 R4J 1 R4J C3 C2 C 0 1 Y N N 26.403 -1.253 28.525 -1.017 -2.999 0.295 C3 R4J 2 R4J C4 C3 C 0 1 Y N N 26.004 0.080 28.344 -0.701 -1.755 -0.243 C4 R4J 3 R4J C5 C4 C 0 1 Y N N 25.756 0.957 29.516 0.297 -1.651 -1.334 C5 R4J 4 R4J C6 C5 C 0 1 Y N N 24.552 1.670 29.661 0.051 -2.220 -2.582 C6 R4J 5 R4J C7 C6 C 0 1 Y N N 24.379 2.486 30.783 1.008 -2.101 -3.574 C7 R4J 6 R4J C11 C7 C 0 1 Y N N 28.659 1.222 32.213 3.634 0.281 -0.555 C11 R4J 7 R4J C16 C8 C 0 1 N N N 30.769 2.367 32.877 4.206 2.012 1.127 C16 R4J 8 R4J C18 C9 C 0 1 N N N 29.637 0.683 34.454 5.756 0.096 0.715 C18 R4J 9 R4J C24 C10 C 0 1 N N N 25.847 0.552 24.689 -2.772 0.670 1.575 C24 R4J 10 R4J C27 C11 C 0 1 N N N 26.966 2.917 25.093 -3.373 1.505 -0.718 C27 R4J 11 R4J O28 O1 O 0 1 N N N 27.949 2.493 24.513 -3.194 0.961 -1.787 O28 R4J 12 R4J C30 C12 C 0 1 N N N 28.137 5.118 25.543 -5.596 2.197 -1.489 C30 R4J 13 R4J C31 C13 C 0 1 N N N 28.633 5.413 26.976 -6.909 1.742 -0.842 C31 R4J 14 R4J C33 C14 C 0 1 N N N 26.278 4.937 27.817 -6.115 2.333 1.372 C33 R4J 15 R4J C34 C15 C 0 1 N N N 25.834 4.820 26.349 -4.770 2.813 0.816 C34 R4J 16 R4J CL1 CL1 CL 0 0 N N N 27.155 -3.712 27.740 -2.333 -4.653 1.985 CL1 R4J 17 R4J N8 N1 N 0 1 Y N N 25.316 2.607 31.709 2.136 -1.467 -3.365 N8 R4J 18 R4J C9 C16 C 0 1 Y N N 26.502 1.948 31.627 2.435 -0.895 -2.182 C9 R4J 19 R4J C10 C17 C 0 1 Y N N 27.623 1.971 32.544 3.631 -0.165 -1.797 C10 R4J 20 R4J S12 S1 S 0 1 Y N N 28.346 0.405 30.700 2.150 -0.141 0.278 S12 R4J 21 R4J C13 C18 C 0 1 Y N N 26.749 1.108 30.527 1.515 -0.970 -1.135 C13 R4J 22 R4J C14 C19 C 0 1 N N S 29.945 1.077 32.999 4.764 1.063 0.064 C14 R4J 23 R4J O15 O2 O 0 1 N N N 30.710 0.015 32.433 5.431 1.820 -0.948 O15 R4J 24 R4J O17 O3 O 0 1 N N N 30.215 3.425 33.663 5.277 2.753 1.714 O17 R4J 25 R4J CL19 CL2 CL 0 0 N N N 31.117 0.566 35.474 7.108 1.031 1.456 CL19 R4J 26 R4J C20 C20 C 0 1 Y N N 25.848 0.581 27.028 -1.328 -0.599 0.247 C20 R4J 27 R4J O21 O4 O 0 1 N N N 25.465 1.810 26.611 -1.166 0.702 -0.117 O21 R4J 28 R4J C22 C21 C 0 1 N N R 25.745 2.018 25.212 -2.297 1.466 0.337 C22 R4J 29 R4J C25 C22 C 0 1 Y N N 26.095 -0.264 25.943 -2.262 -0.725 1.265 C25 R4J 30 R4J C26 C23 C 0 1 Y N N 26.497 -1.583 26.142 -2.563 -1.959 1.799 C26 R4J 31 R4J N29 N2 N 0 1 N N N 26.968 4.193 25.618 -4.533 2.146 -0.473 N29 R4J 32 R4J N32 N3 N 0 1 N N N 27.512 5.747 27.884 -7.161 2.544 0.362 N32 R4J 33 R4J H1 H1 H 0 1 N N N 26.516 -1.642 29.526 -0.535 -3.888 -0.083 H1 R4J 34 R4J H2 H2 H 0 1 N N N 23.773 1.588 28.917 -0.873 -2.746 -2.772 H2 R4J 35 R4J H3 H3 H 0 1 N N N 23.455 3.033 30.897 0.822 -2.540 -4.543 H3 R4J 36 R4J H4 H4 H 0 1 N N N 31.795 2.168 33.220 3.499 2.700 0.663 H4 R4J 37 R4J H5 H5 H 0 1 N N N 30.789 2.679 31.822 3.697 1.434 1.899 H5 R4J 38 R4J H6 H6 H 0 1 N N N 28.969 1.441 34.889 5.247 -0.481 1.487 H6 R4J 39 R4J H7 H7 H 0 1 N N N 29.132 -0.294 34.454 6.154 -0.580 -0.042 H7 R4J 40 R4J H8 H8 H 0 1 N N N 24.911 0.244 24.200 -2.317 1.058 2.486 H8 R4J 41 R4J H9 H9 H 0 1 N N N 26.682 0.446 23.981 -3.860 0.679 1.650 H9 R4J 42 R4J H10 H10 H 0 1 N N N 28.944 4.647 24.962 -5.345 1.532 -2.315 H10 R4J 43 R4J H11 H11 H 0 1 N N N 27.835 6.057 25.056 -5.703 3.217 -1.856 H11 R4J 44 R4J H12 H12 H 0 1 N N N 29.153 4.525 27.363 -7.728 1.878 -1.548 H12 R4J 45 R4J H13 H13 H 0 1 N N N 29.331 6.262 26.944 -6.834 0.689 -0.569 H13 R4J 46 R4J H14 H14 H 0 1 N N N 25.485 5.424 28.404 -6.051 1.273 1.614 H14 R4J 47 R4J H15 H15 H 0 1 N N N 26.473 3.934 28.224 -6.359 2.898 2.272 H15 R4J 48 R4J H16 H16 H 0 1 N N N 25.619 5.816 25.936 -4.798 3.892 0.670 H16 R4J 49 R4J H17 H17 H 0 1 N N N 24.936 4.189 26.272 -3.973 2.558 1.515 H17 R4J 50 R4J H18 H18 H 0 1 N N N 27.612 2.566 33.445 4.454 0.000 -2.476 H18 R4J 51 R4J H19 H19 H 0 1 N N N 31.520 -0.086 32.918 4.861 2.454 -1.403 H19 R4J 52 R4J H20 H20 H 0 1 N N N 30.748 4.205 33.565 4.996 3.376 2.398 H20 R4J 53 R4J H21 H21 H 0 1 N N N 24.890 2.506 24.722 -1.997 2.475 0.618 H21 R4J 54 R4J H22 H22 H 0 1 N N N 26.688 -2.223 25.293 -3.285 -2.037 2.599 H22 R4J 55 R4J H23 H23 H 0 1 N N N 27.860 5.677 28.819 -7.251 3.522 0.133 H23 R4J 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R4J O28 C27 DOUB N N 1 R4J C24 C22 SING N N 2 R4J C24 C25 SING N N 3 R4J C27 C22 SING N N 4 R4J C27 N29 SING N N 5 R4J C22 O21 SING N N 6 R4J C30 N29 SING N N 7 R4J C30 C31 SING N N 8 R4J N29 C34 SING N N 9 R4J C25 C26 DOUB Y N 10 R4J C25 C20 SING Y N 11 R4J C26 C2 SING Y N 12 R4J C34 C33 SING N N 13 R4J O21 C20 SING N N 14 R4J C31 N32 SING N N 15 R4J C20 C4 DOUB Y N 16 R4J C2 CL1 SING N N 17 R4J C2 C3 DOUB Y N 18 R4J C33 N32 SING N N 19 R4J C4 C3 SING Y N 20 R4J C4 C5 SING N N 21 R4J C5 C6 DOUB Y N 22 R4J C5 C13 SING Y N 23 R4J C6 C7 SING Y N 24 R4J C13 S12 SING Y N 25 R4J C13 C9 DOUB Y N 26 R4J S12 C11 SING Y N 27 R4J C7 N8 DOUB Y N 28 R4J C9 N8 SING Y N 29 R4J C9 C10 SING Y N 30 R4J C11 C10 DOUB Y N 31 R4J C11 C14 SING N N 32 R4J O15 C14 SING N N 33 R4J C16 C14 SING N N 34 R4J C16 O17 SING N N 35 R4J C14 C18 SING N N 36 R4J C18 CL19 SING N N 37 R4J C3 H1 SING N N 38 R4J C6 H2 SING N N 39 R4J C7 H3 SING N N 40 R4J C16 H4 SING N N 41 R4J C16 H5 SING N N 42 R4J C18 H6 SING N N 43 R4J C18 H7 SING N N 44 R4J C24 H8 SING N N 45 R4J C24 H9 SING N N 46 R4J C30 H10 SING N N 47 R4J C30 H11 SING N N 48 R4J C31 H12 SING N N 49 R4J C31 H13 SING N N 50 R4J C33 H14 SING N N 51 R4J C33 H15 SING N N 52 R4J C34 H16 SING N N 53 R4J C34 H17 SING N N 54 R4J C10 H18 SING N N 55 R4J O15 H19 SING N N 56 R4J O17 H20 SING N N 57 R4J C22 H21 SING N N 58 R4J C26 H22 SING N N 59 R4J N32 H23 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R4J SMILES ACDLabs 12.01 "c4(Cl)cc(c1ccnc2cc(C(CO)(CCl)O)sc12)c3OC(Cc3c4)C(N5CCNCC5)=O" R4J InChI InChI 1.03 "InChI=1S/C23H23Cl2N3O4S/c24-11-23(31,12-29)19-10-17-21(33-19)15(1-2-27-17)16-9-14(25)7-13-8-18(32-20(13)16)22(30)28-5-3-26-4-6-28/h1-2,7,9-10,18,26,29,31H,3-6,8,11-12H2/t18-,23+/m1/s1" R4J InChIKey InChI 1.03 QPYNPPDGRISUAE-JPYJTQIMSA-N R4J SMILES_CANONICAL CACTVS 3.385 "OC[C@@](O)(CCl)c1sc2c(c1)nccc2c3cc(Cl)cc4C[C@@H](Oc34)C(=O)N5CCNCC5" R4J SMILES CACTVS 3.385 "OC[C](O)(CCl)c1sc2c(c1)nccc2c3cc(Cl)cc4C[CH](Oc34)C(=O)N5CCNCC5" R4J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc2cc(sc2c1c3cc(cc4c3O[C@H](C4)C(=O)N5CCNCC5)Cl)[C@@](CO)(CCl)O" R4J SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc2cc(sc2c1c3cc(cc4c3OC(C4)C(=O)N5CCNCC5)Cl)C(CO)(CCl)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R4J "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R)-5-chloro-7-{2-[(2S)-1-chloro-2,3-dihydroxypropan-2-yl]thieno[3,2-b]pyridin-7-yl}-2,3-dihydro-1-benzofuran-2-yl](piperazin-1-yl)methanone" R4J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-5-chloranyl-7-[2-[(2~{S})-1-chloranyl-2,3-bis(oxidanyl)propan-2-yl]thieno[3,2-b]pyridin-7-yl]-2,3-dihydro-1-benzofuran-2-yl]-piperazin-1-yl-methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R4J "Create component" 2020-01-29 RCSB R4J "Initial release" 2020-04-29 RCSB ##