data_R4L
#
_chem_comp.id R4L
_chem_comp.name "11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C35 H44 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-03
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 624.776
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R4L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4B99
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R4L CAP CAP C 0 1 N N N -46.577 1.994 -11.545 -5.338 -1.164 2.602 CAP R4L 1
R4L CAN CAN C 0 1 N N N -46.537 0.788 -10.606 -5.743 -2.646 2.687 CAN R4L 2
R4L CAO CAO C 0 1 N N N -46.369 1.535 -9.278 -6.817 -2.872 1.602 CAO R4L 3
R4L CAQ CAQ C 0 1 N N N -45.610 2.828 -9.616 -6.558 -1.746 0.571 CAQ R4L 4
R4L CBO CBO C 0 1 N N N -45.274 2.604 -11.076 -6.179 -0.542 1.469 CBO R4L 5
R4L NBT NBT N 0 1 N N N -44.924 3.790 -11.937 -5.383 0.430 0.714 NBT R4L 6
R4L CBK CBK C 0 1 Y N N -44.630 5.027 -11.500 -5.778 1.761 0.639 CBK R4L 7
R4L CAK CAK C 0 1 Y N N -43.733 5.094 -10.431 -5.906 2.514 1.798 CAK R4L 8
R4L CAG CAG C 0 1 Y N N -43.329 6.323 -9.927 -6.260 3.846 1.723 CAG R4L 9
R4L CAF CAF C 0 1 Y N N -43.787 7.488 -10.514 -6.489 4.440 0.493 CAF R4L 10
R4L CAJ CAJ C 0 1 Y N N -44.637 7.430 -11.605 -6.381 3.704 -0.667 CAJ R4L 11
R4L CBJ CBJ C 0 1 Y N N -45.055 6.198 -12.108 -6.042 2.348 -0.607 CBJ R4L 12
R4L CBI CBI C 0 1 N N N -45.932 6.295 -13.188 -6.018 1.549 -1.838 CBI R4L 13
R4L OAE OAE O 0 1 N N N -46.733 7.241 -13.207 -6.865 1.797 -2.674 OAE R4L 14
R4L NBS NBS N 0 1 N N N -45.966 5.412 -14.212 -5.157 0.582 -2.120 NBS R4L 15
R4L CAC CAC C 0 1 N N N -47.018 5.619 -15.261 -5.336 -0.105 -3.401 CAC R4L 16
R4L C5 C5 C 0 1 Y N N -45.191 4.310 -14.306 -4.097 0.151 -1.322 C5 R4L 17
R4L C6 C6 C 0 1 Y N N -44.837 3.896 -15.591 -2.884 -0.188 -1.905 C6 R4L 18
R4L N1 N1 N 0 1 Y N N -44.050 2.745 -15.744 -1.903 -0.641 -1.137 N1 R4L 19
R4L C4 C4 C 0 1 Y N N -44.738 3.548 -13.244 -4.220 0.038 0.068 C4 R4L 20
R4L N3 N3 N 0 1 Y N N -43.967 2.466 -13.453 -3.202 -0.440 0.776 N3 R4L 21
R4L C2 C2 C 0 1 Y N N -43.635 2.052 -14.678 -2.067 -0.776 0.169 C2 R4L 22
R4L NBB NBB N 0 1 N N N -42.901 0.957 -14.884 -1.024 -1.280 0.933 NBB R4L 23
R4L CBF CBF C 0 1 Y N N -42.555 0.089 -13.900 0.218 -1.516 0.346 CBF R4L 24
R4L CBH CBH C 0 1 Y N N -42.735 -1.259 -14.186 1.020 -2.562 0.808 CBH R4L 25
R4L CAM CAM C 0 1 Y N N -42.376 -2.251 -13.266 2.250 -2.797 0.228 CAM R4L 26
R4L OBC OBC O 0 1 N N N -43.301 -1.504 -15.403 0.588 -3.350 1.829 OBC R4L 27
R4L CAA CAA C 0 1 N N N -43.546 -2.879 -15.705 1.459 -4.401 2.250 CAA R4L 28
R4L CAI CAI C 0 1 Y N N -41.976 0.444 -12.689 0.655 -0.713 -0.701 CAI R4L 29
R4L CAH CAH C 0 1 Y N N -41.618 -0.543 -11.777 1.882 -0.943 -1.284 CAH R4L 30
R4L CBE CBE C 0 1 Y N N -41.830 -1.892 -12.048 2.690 -1.985 -0.822 CBE R4L 31
R4L CBD CBD C 0 1 N N N -41.407 -2.862 -11.126 4.005 -2.232 -1.446 CBD R4L 32
R4L OAD OAD O 0 1 N N N -40.390 -3.504 -11.424 4.330 -3.364 -1.750 OAD R4L 33
R4L NBQ NBQ N 0 1 N N N -41.990 -3.010 -9.921 4.844 -1.204 -1.678 NBQ R4L 34
R4L CAU CAU C 0 1 N N N -41.422 -4.013 -8.980 6.193 -1.444 -2.209 CAU R4L 35
R4L CAS CAS C 0 1 N N N -42.448 -4.991 -8.547 7.213 -0.769 -1.287 CAS R4L 36
R4L CAT CAT C 0 1 N N N -43.191 -2.267 -9.541 4.426 0.179 -1.411 CAT R4L 37
R4L CAR CAR C 0 1 N N N -44.214 -3.309 -9.145 5.462 0.840 -0.496 CAR R4L 38
R4L CBN CBN C 0 1 N N N -43.559 -4.102 -7.959 6.853 0.710 -1.131 CBN R4L 39
R4L NBR NBR N 0 1 N N N -44.464 -4.795 -7.015 7.849 1.368 -0.274 NBR R4L 40
R4L CAX CAX C 0 1 N N N -45.529 -3.928 -6.474 7.603 2.815 -0.197 CAX R4L 41
R4L CAV CAV C 0 1 N N N -46.931 -4.216 -7.056 8.704 3.473 0.638 CAV R4L 42
R4L NBP NBP N 0 1 N N N -47.340 -5.640 -6.950 8.723 2.873 1.979 NBP R4L 43
R4L CAB CAB C 0 1 N N N -48.280 -6.007 -8.030 7.476 3.158 2.701 CAB R4L 44
R4L CAW CAW C 0 1 N N N -46.214 -6.567 -6.956 8.969 1.426 1.902 CAW R4L 45
R4L CAY CAY C 0 1 N N N -45.128 -5.878 -7.785 7.868 0.768 1.068 CAY R4L 46
R4L HAP1 HAP1 H 0 0 N N N -46.554 1.707 -12.607 -5.554 -0.664 3.546 HAP1 R4L 47
R4L HAP2 HAP2 H 0 0 N N N -47.443 2.647 -11.361 -4.276 -1.081 2.369 HAP2 R4L 48
R4L HAN1 HAN1 H 0 0 N N N -47.470 0.207 -10.639 -4.879 -3.282 2.495 HAN1 R4L 49
R4L HAN2 HAN2 H 0 0 N N N -45.685 0.126 -10.819 -6.156 -2.865 3.672 HAN2 R4L 50
R4L HBO HBO H 0 1 N N N -44.475 1.852 -11.151 -7.075 -0.070 1.873 HBO R4L 51
R4L HAO1 HAO1 H 0 0 N N N -47.352 1.770 -8.844 -6.690 -3.851 1.138 HAO1 R4L 52
R4L HAO2 HAO2 H 0 0 N N N -45.791 0.926 -8.567 -7.815 -2.777 2.028 HAO2 R4L 53
R4L HAQ1 HAQ1 H 0 0 N N N -46.246 3.715 -9.481 -5.733 -2.010 -0.090 HAQ1 R4L 54
R4L HAQ2 HAQ2 H 0 0 N N N -44.701 2.932 -9.005 -7.460 -1.532 -0.002 HAQ2 R4L 55
R4L HAK HAK H 0 1 N N N -43.351 4.183 -9.994 -5.727 2.057 2.760 HAK R4L 56
R4L HAG HAG H 0 1 N N N -42.660 6.369 -9.080 -6.361 4.427 2.628 HAG R4L 57
R4L HAF HAF H 0 1 N N N -43.481 8.446 -10.120 -6.752 5.486 0.442 HAF R4L 58
R4L HAJ HAJ H 0 1 N N N -44.978 8.343 -12.069 -6.560 4.174 -1.623 HAJ R4L 59
R4L HAC1 HAC1 H 0 0 N N N -46.931 4.835 -16.028 -6.191 0.322 -3.926 HAC1 R4L 60
R4L HAC2 HAC2 H 0 0 N N N -48.014 5.569 -14.796 -4.439 0.018 -4.008 HAC2 R4L 61
R4L HAC3 HAC3 H 0 0 N N N -46.881 6.605 -15.728 -5.512 -1.166 -3.223 HAC3 R4L 62
R4L H6 H6 H 0 1 N N N -45.165 4.454 -16.456 -2.742 -0.084 -2.970 H6 R4L 63
R4L HBB HBB H 0 1 N N N -42.589 0.765 -15.814 -1.159 -1.467 1.875 HBB R4L 64
R4L HAI HAI H 0 1 N N N -41.804 1.484 -12.456 0.031 0.092 -1.059 HAI R4L 65
R4L HAM HAM H 0 1 N N N -42.525 -3.293 -13.507 2.871 -3.605 0.584 HAM R4L 66
R4L HAA1 HAA1 H 0 0 N N N -44.001 -2.960 -16.703 1.641 -5.078 1.416 HAA1 R4L 67
R4L HAA2 HAA2 H 0 0 N N N -42.596 -3.433 -15.689 2.405 -3.977 2.587 HAA2 R4L 68
R4L HAA3 HAA3 H 0 0 N N N -44.230 -3.303 -14.955 0.996 -4.951 3.070 HAA3 R4L 69
R4L HAH HAH H 0 1 N N N -41.166 -0.257 -10.839 2.219 -0.318 -2.097 HAH R4L 70
R4L HAU1 HAU1 H 0 0 N N N -40.604 -4.551 -9.481 6.386 -2.516 -2.245 HAU1 R4L 71
R4L HAU2 HAU2 H 0 0 N N N -41.029 -3.491 -8.095 6.272 -1.023 -3.211 HAU2 R4L 72
R4L HAT1 HAT1 H 0 0 N N N -42.976 -1.600 -8.693 4.364 0.729 -2.350 HAT1 R4L 73
R4L HAT2 HAT2 H 0 0 N N N -43.559 -1.673 -10.391 3.453 0.178 -0.920 HAT2 R4L 74
R4L HAS1 HAS1 H 0 0 N N N -42.821 -5.575 -9.401 7.197 -1.253 -0.310 HAS1 R4L 75
R4L HAS2 HAS2 H 0 0 N N N -42.045 -5.674 -7.785 8.210 -0.857 -1.720 HAS2 R4L 76
R4L HBN HBN H 0 1 N N N -43.034 -3.339 -7.365 6.846 1.187 -2.111 HBN R4L 77
R4L HAR1 HAR1 H 0 0 N N N -45.147 -2.828 -8.818 5.215 1.893 -0.368 HAR1 R4L 78
R4L HAR2 HAR2 H 0 0 N N N -44.425 -3.982 -9.989 5.459 0.344 0.475 HAR2 R4L 79
R4L HAX1 HAX1 H 0 0 N N N -45.571 -4.071 -5.384 7.606 3.238 -1.201 HAX1 R4L 80
R4L HAX2 HAX2 H 0 0 N N N -45.270 -2.882 -6.697 6.635 2.995 0.271 HAX2 R4L 81
R4L HAY1 HAY1 H 0 0 N N N -45.586 -5.447 -8.687 6.903 0.925 1.550 HAY1 R4L 82
R4L HAY2 HAY2 H 0 0 N N N -44.374 -6.624 -8.077 8.064 -0.301 0.985 HAY2 R4L 83
R4L HAV1 HAV1 H 0 0 N N N -47.665 -3.602 -6.513 9.669 3.316 0.156 HAV1 R4L 84
R4L HAV2 HAV2 H 0 0 N N N -46.931 -3.933 -8.119 8.509 4.542 0.720 HAV2 R4L 85
R4L HAB1 HAB1 H 0 0 N N N -48.564 -7.064 -7.926 6.633 2.746 2.146 HAB1 R4L 86
R4L HAB2 HAB2 H 0 0 N N N -49.179 -5.377 -7.963 7.517 2.702 3.690 HAB2 R4L 87
R4L HAB3 HAB3 H 0 0 N N N -47.796 -5.852 -9.006 7.353 4.236 2.802 HAB3 R4L 88
R4L HAW1 HAW1 H 0 0 N N N -45.859 -6.749 -5.931 9.937 1.246 1.434 HAW1 R4L 89
R4L HAW2 HAW2 H 0 0 N N N -46.504 -7.522 -7.418 8.966 1.003 2.907 HAW2 R4L 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R4L CAP CAN SING N N 1
R4L CAP CBO SING N N 2
R4L CAN CAO SING N N 3
R4L CAO CAQ SING N N 4
R4L CAQ CBO SING N N 5
R4L CBO NBT SING N N 6
R4L NBT CBK SING N N 7
R4L NBT C4 SING N N 8
R4L CBK CAK SING Y N 9
R4L CBK CBJ DOUB Y N 10
R4L CAK CAG DOUB Y N 11
R4L CAG CAF SING Y N 12
R4L CAF CAJ DOUB Y N 13
R4L CAJ CBJ SING Y N 14
R4L CBJ CBI SING N N 15
R4L CBI OAE DOUB N N 16
R4L CBI NBS SING N N 17
R4L NBS CAC SING N N 18
R4L NBS C5 SING N N 19
R4L C5 C6 DOUB Y N 20
R4L C5 C4 SING Y N 21
R4L C6 N1 SING Y N 22
R4L N1 C2 DOUB Y N 23
R4L C4 N3 DOUB Y N 24
R4L N3 C2 SING Y N 25
R4L C2 NBB SING N N 26
R4L NBB CBF SING N N 27
R4L CBF CBH SING Y N 28
R4L CBF CAI DOUB Y N 29
R4L CBH CAM DOUB Y N 30
R4L CBH OBC SING N N 31
R4L CAM CBE SING Y N 32
R4L OBC CAA SING N N 33
R4L CAI CAH SING Y N 34
R4L CAH CBE DOUB Y N 35
R4L CBE CBD SING N N 36
R4L CBD OAD DOUB N N 37
R4L CBD NBQ SING N N 38
R4L NBQ CAU SING N N 39
R4L NBQ CAT SING N N 40
R4L CAU CAS SING N N 41
R4L CAS CBN SING N N 42
R4L CAT CAR SING N N 43
R4L CAR CBN SING N N 44
R4L CBN NBR SING N N 45
R4L NBR CAX SING N N 46
R4L NBR CAY SING N N 47
R4L CAX CAV SING N N 48
R4L CAV NBP SING N N 49
R4L NBP CAB SING N N 50
R4L NBP CAW SING N N 51
R4L CAW CAY SING N N 52
R4L CAP HAP1 SING N N 53
R4L CAP HAP2 SING N N 54
R4L CAN HAN1 SING N N 55
R4L CAN HAN2 SING N N 56
R4L CBO HBO SING N N 57
R4L CAO HAO1 SING N N 58
R4L CAO HAO2 SING N N 59
R4L CAQ HAQ1 SING N N 60
R4L CAQ HAQ2 SING N N 61
R4L CAK HAK SING N N 62
R4L CAG HAG SING N N 63
R4L CAF HAF SING N N 64
R4L CAJ HAJ SING N N 65
R4L CAC HAC1 SING N N 66
R4L CAC HAC2 SING N N 67
R4L CAC HAC3 SING N N 68
R4L C6 H6 SING N N 69
R4L NBB HBB SING N N 70
R4L CAI HAI SING N N 71
R4L CAM HAM SING N N 72
R4L CAA HAA1 SING N N 73
R4L CAA HAA2 SING N N 74
R4L CAA HAA3 SING N N 75
R4L CAH HAH SING N N 76
R4L CAU HAU1 SING N N 77
R4L CAU HAU2 SING N N 78
R4L CAT HAT1 SING N N 79
R4L CAT HAT2 SING N N 80
R4L CAS HAS1 SING N N 81
R4L CAS HAS2 SING N N 82
R4L CBN HBN SING N N 83
R4L CAR HAR1 SING N N 84
R4L CAR HAR2 SING N N 85
R4L CAX HAX1 SING N N 86
R4L CAX HAX2 SING N N 87
R4L CAY HAY1 SING N N 88
R4L CAY HAY2 SING N N 89
R4L CAV HAV1 SING N N 90
R4L CAV HAV2 SING N N 91
R4L CAB HAB1 SING N N 92
R4L CAB HAB2 SING N N 93
R4L CAB HAB3 SING N N 94
R4L CAW HAW1 SING N N 95
R4L CAW HAW2 SING N N 96
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R4L SMILES ACDLabs 12.01 "O=C2c7ccccc7N(c1nc(ncc1N2C)Nc3ccc(cc3OC)C(=O)N5CCC(N4CCN(CC4)C)CC5)C6CCCC6"
R4L InChI InChI 1.03
"InChI=1S/C35H44N8O3/c1-39-18-20-41(21-19-39)25-14-16-42(17-15-25)33(44)24-12-13-28(31(22-24)46-3)37-35-36-23-30-32(38-35)43(26-8-4-5-9-26)29-11-7-6-10-27(29)34(45)40(30)2/h6-7,10-13,22-23,25-26H,4-5,8-9,14-21H2,1-3H3,(H,36,37,38)"
R4L InChIKey InChI 1.03 OXSKLFUMHBJZNS-UHFFFAOYSA-N
R4L SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
R4L SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
R4L SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCCC7"
R4L SMILES "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCCC7"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R4L "SYSTEMATIC NAME" ACDLabs 12.01 "11-cyclopentyl-2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
R4L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R4L "Create component" 2012-09-03 EBI
R4L "Initial release" 2012-09-14 RCSB
R4L "Modify descriptor" 2014-09-05 RCSB
#