data_R4T # _chem_comp.id R4T _chem_comp.name "9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 F2 N10 O8 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2020-09-02 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 696.541 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R4T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7A90 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R4T C1 C1 C 0 1 Y N N -16.005 21.457 -7.886 -7.307 -0.084 -0.052 C1 R4T 1 R4T C2 C2 C 0 1 Y N N -15.555 20.122 -7.633 -8.088 -0.829 0.856 C2 R4T 2 R4T C3 C3 C 0 1 Y N N -14.270 19.757 -8.220 -9.434 -0.490 1.002 C3 R4T 3 R4T C4 C4 C 0 1 Y N N -17.462 20.473 -6.697 -6.078 -1.645 0.906 C4 R4T 4 R4T C5 C5 C 0 1 N N R -19.521 22.759 -8.951 -2.690 0.631 -0.064 C5 R4T 5 R4T C6 C6 C 0 1 N N R -18.118 23.194 -8.784 -4.189 0.983 -0.043 C6 R4T 6 R4T N1 N1 N 0 1 Y N N -15.277 22.287 -8.605 -7.877 0.901 -0.732 N1 R4T 7 R4T N2 N2 N 0 1 Y N N -17.144 21.605 -7.299 -6.047 -0.624 0.004 N2 R4T 8 R4T N3 N3 N 0 1 Y N N -16.495 19.566 -6.894 -7.274 -1.764 1.404 N3 R4T 9 R4T O1 O1 O 0 1 N N N -19.143 22.763 -6.764 -3.935 -1.250 -0.868 O1 R4T 10 R4T C7 C7 C 0 1 N N R -17.877 22.870 -7.355 -4.881 -0.183 -0.766 C7 R4T 11 R4T C8 C8 C 0 1 N N R -20.127 23.180 -7.650 -2.609 -0.728 -0.774 C8 R4T 12 R4T C9 C9 C 0 1 N N N -21.425 22.498 -7.301 -1.731 -1.685 0.036 C9 R4T 13 R4T C10 C10 C 0 1 Y N N -21.899 14.121 -8.707 9.144 -1.202 -0.548 C10 R4T 14 R4T C11 C11 C 0 1 Y N N -21.457 16.002 -9.921 7.306 0.078 -0.051 C11 R4T 15 R4T C12 C12 C 0 1 Y N N -20.121 15.553 -10.173 8.090 0.824 0.852 C12 R4T 16 R4T C13 C13 C 0 1 Y N N -19.754 14.268 -9.587 9.436 0.483 0.996 C13 R4T 17 R4T C14 C14 C 0 1 Y N N -20.474 17.458 -11.111 6.084 1.648 0.900 C14 R4T 18 R4T C15 C15 C 0 1 N N R -22.761 19.519 -8.858 2.686 -0.624 -0.063 C15 R4T 19 R4T O2 O2 O 0 1 N N N -21.230 21.161 -6.909 -0.624 -2.108 -0.762 O2 R4T 20 R4T C17 C16 C 0 1 N N R -22.870 17.872 -10.452 4.880 0.183 -0.764 C17 R4T 21 R4T C18 C17 C 0 1 N N R -23.184 20.121 -10.159 2.609 0.735 -0.776 C18 R4T 22 R4T C19 C18 C 0 1 N N N -22.504 21.421 -10.512 1.735 1.696 0.032 C19 R4T 23 R4T C16 C19 C 0 1 N N R -23.193 18.116 -9.023 4.184 -0.977 -0.035 C16 R4T 24 R4T N4 N4 N 0 1 Y N N -20.681 13.642 -8.887 9.913 -0.524 0.285 N4 R4T 25 R4T N N5 N 0 1 Y N N -13.644 20.685 -8.920 -9.915 0.512 0.285 N R4T 26 R4T C C20 C 0 1 Y N N -14.124 21.902 -9.100 -9.152 1.180 -0.561 C R4T 27 R4T O O3 O 0 1 N N N -22.025 18.933 -6.327 0.779 -2.299 1.328 O R4T 28 R4T N11 N6 N 1 1 N N N -13.630 18.434 -8.093 -10.255 -1.194 1.887 N11 R4T 29 R4T F6 F1 F 0 1 N N N -24.512 18.020 -8.877 4.412 -2.181 -0.709 F6 R4T 30 R4T F9 F2 F 0 1 N N N -18.027 24.513 -8.928 -4.416 2.182 -0.726 F9 R4T 31 R4T N5 N7 N 0 1 Y N N -22.285 15.273 -9.202 7.870 -0.916 -0.723 N5 R4T 32 R4T N6 N8 N 0 1 Y N N -21.605 17.141 -10.508 6.048 0.623 0.002 N6 R4T 33 R4T N7 N9 N 0 1 Y N N -19.565 16.492 -10.914 7.281 1.765 1.397 N7 R4T 34 R4T N9 N10 N 1 1 N N N -18.431 13.628 -9.714 10.261 1.188 1.877 N9 R4T 35 R4T O10 O4 O 0 1 N N N -20.087 23.360 -10.064 -1.959 1.618 -0.794 O10 R4T 36 R4T O22 O5 O 0 1 N N N -18.937 22.020 -11.481 -0.776 2.296 1.330 O22 R4T 37 R4T O5 O6 O 0 1 N N N -22.766 19.138 -11.044 3.937 1.252 -0.871 O5 R4T 38 R4T O7 O7 O 0 1 N N N -23.362 20.085 -7.745 1.957 -1.611 -0.796 O7 R4T 39 R4T O8 O8 O 0 1 N N N -21.164 21.226 -10.895 0.623 2.112 -0.763 O8 R4T 40 R4T P P1 P 0 1 N N R -22.430 20.252 -6.564 0.802 -2.517 -0.136 P R4T 41 R4T P1 P2 P 0 1 N N R -20.255 22.426 -11.243 -0.801 2.520 -0.132 P1 R4T 42 R4T S3 S1 S 0 1 N N N -23.488 21.022 -5.095 1.190 -4.562 -0.540 S3 R4T 43 R4T S4 S2 S 0 1 N N N -21.025 23.484 -12.714 -1.188 4.567 -0.527 S4 R4T 44 R4T H4 H1 H 0 1 N N N -18.366 20.304 -6.131 -5.234 -2.264 1.168 H4 R4T 45 R4T H5 H2 H 0 1 N N N -19.560 21.663 -9.033 -2.306 0.552 0.953 H5 R4T 46 R4T H6 H3 H 0 1 N N N -17.442 22.627 -9.441 -4.547 1.058 0.984 H6 R4T 47 R4T H7 H4 H 0 1 N N N -17.287 23.671 -6.885 -5.193 0.132 -1.762 H7 R4T 48 R4T H8 H5 H 0 1 N N N -20.259 24.272 -7.629 -2.190 -0.599 -1.772 H8 R4T 49 R4T H91 H6 H 0 1 N N N -21.902 23.044 -6.474 -1.364 -1.174 0.927 H91 R4T 50 R4T H92 H7 H 0 1 N N N -22.084 22.517 -8.182 -2.319 -2.554 0.332 H92 R4T 51 R4T H10 H8 H 0 1 N N N -22.604 13.542 -8.130 9.576 -2.017 -1.109 H10 R4T 52 R4T H14 H9 H 0 1 N N N -20.306 18.361 -11.679 5.242 2.272 1.160 H14 R4T 53 R4T H15 H10 H 0 1 N N N -21.665 19.560 -8.777 2.297 -0.542 0.952 H15 R4T 54 R4T H17 H11 H 0 1 N N N -23.671 17.281 -10.920 5.189 -0.138 -1.759 H17 R4T 55 R4T H18 H12 H 0 1 N N N -24.276 20.251 -10.179 2.190 0.605 -1.774 H18 R4T 56 R4T H192 H13 H 0 0 N N N -22.530 22.085 -9.636 1.372 1.191 0.928 H192 R4T 57 R4T H191 H14 H 0 0 N N N -23.047 21.891 -11.345 2.323 2.568 0.320 H191 R4T 58 R4T H16 H15 H 0 1 N N N -22.623 17.442 -8.366 4.538 -1.045 0.993 H16 R4T 59 R4T H H16 H 0 1 N N N -13.545 22.608 -9.677 -9.588 1.991 -1.126 H R4T 60 R4T H111 H17 H 0 0 N N N -12.761 18.435 -8.587 -10.224 -0.756 2.796 H111 R4T 61 R4T H113 H18 H 0 0 N N N -13.464 18.236 -7.127 -11.204 -1.187 1.543 H113 R4T 62 R4T HN92 H19 H 0 0 N N N -18.432 12.759 -9.219 10.231 0.753 2.787 HN92 R4T 63 R4T HN9 H20 H 0 1 N N N -18.233 13.462 -10.680 11.208 1.180 1.531 HN9 R4T 64 R4T HS3 H21 H 0 1 N N N -23.529 20.038 -4.247 0.163 -5.189 0.060 HS3 R4T 65 R4T HS4 H22 H 0 1 N N N -20.041 23.523 -13.563 -0.159 5.191 0.074 HS4 R4T 66 R4T HN91 HN91 H 0 0 N N N -17.731 14.230 -9.329 9.938 2.142 1.950 HN91 R4T 67 R4T H112 H112 H 0 0 N N N -14.232 17.734 -8.478 -9.931 -2.146 1.961 H112 R4T 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R4T S4 P1 SING N N 1 R4T O22 P1 DOUB N N 2 R4T P1 O8 SING N N 3 R4T P1 O10 SING N N 4 R4T C14 N7 DOUB Y N 5 R4T C14 N6 SING Y N 6 R4T O5 C17 SING N N 7 R4T O5 C18 SING N N 8 R4T N7 C12 SING Y N 9 R4T O8 C19 SING N N 10 R4T C19 C18 SING N N 11 R4T N6 C17 SING N N 12 R4T N6 C11 SING Y N 13 R4T C17 C16 SING N N 14 R4T C12 C11 DOUB Y N 15 R4T C12 C13 SING Y N 16 R4T C18 C15 SING N N 17 R4T O10 C5 SING N N 18 R4T C11 N5 SING Y N 19 R4T N9 C13 SING N N 20 R4T C13 N4 DOUB Y N 21 R4T N5 C10 DOUB Y N 22 R4T C N DOUB Y N 23 R4T C N1 SING Y N 24 R4T C16 F6 SING N N 25 R4T C16 C15 SING N N 26 R4T C5 C6 SING N N 27 R4T C5 C8 SING N N 28 R4T F9 C6 SING N N 29 R4T N C3 SING Y N 30 R4T N4 C10 SING Y N 31 R4T C15 O7 SING N N 32 R4T C6 C7 SING N N 33 R4T N1 C1 DOUB Y N 34 R4T C3 N11 SING N N 35 R4T C3 C2 DOUB Y N 36 R4T C1 C2 SING Y N 37 R4T C1 N2 SING Y N 38 R4T O7 P SING N N 39 R4T C8 C9 SING N N 40 R4T C8 O1 SING N N 41 R4T C2 N3 SING Y N 42 R4T C7 N2 SING N N 43 R4T C7 O1 SING N N 44 R4T C9 O2 SING N N 45 R4T N2 C4 SING Y N 46 R4T O2 P SING N N 47 R4T N3 C4 DOUB Y N 48 R4T P O DOUB N N 49 R4T P S3 SING N N 50 R4T C4 H4 SING N N 51 R4T C5 H5 SING N N 52 R4T C6 H6 SING N N 53 R4T C7 H7 SING N N 54 R4T C8 H8 SING N N 55 R4T C9 H91 SING N N 56 R4T C9 H92 SING N N 57 R4T C10 H10 SING N N 58 R4T C14 H14 SING N N 59 R4T C15 H15 SING N N 60 R4T C17 H17 SING N N 61 R4T C18 H18 SING N N 62 R4T C19 H192 SING N N 63 R4T C19 H191 SING N N 64 R4T C16 H16 SING N N 65 R4T C H SING N N 66 R4T N11 H111 SING N N 67 R4T N11 H113 SING N N 68 R4T N9 HN92 SING N N 69 R4T N9 HN9 SING N N 70 R4T S3 HS3 SING N N 71 R4T S4 HS4 SING N N 72 R4T HN91 N9 SING N N 73 R4T N11 H112 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R4T InChI InChI 1.03 "InChI=1S/C20H22F2N10O8P2S2/c21-9-13-7(37-19(9)31-5-29-11-15(23)25-3-27-17(11)31)1-35-41(33,43)40-14-8(2-36-42(34,44)39-13)38-20(10(14)22)32-6-30-12-16(24)26-4-28-18(12)32/h3-10,13-14,19-20H,1-2H2,(H,33,43)(H,34,44)(H2,23,25,27)(H2,24,26,28)/t7-,8-,9-,10-,13-,14-,19-,20-,41-,42-/m1/s1" R4T InChIKey InChI 1.03 IAOSONHXVQMOMS-WLDRUBBVSA-N R4T SMILES_CANONICAL CACTVS 3.385 "[NH3+]c1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](S)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P@](S)(=O)O[C@H]4[C@H]3F)n6cnc7c([NH3+])ncnc67" R4T SMILES CACTVS 3.385 "[NH3+]c1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](S)(=O)O[CH]4[CH]3F)n6cnc7c([NH3+])ncnc67" R4T SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O[C@@H]5[C@@H](CO[P@](=O)(O4)S)O[C@H]([C@@H]5F)n6cnc7c6ncnc7[NH3+])S)F)[NH3+]" R4T SMILES "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)S)OC(C5F)n6cnc7c6ncnc7[NH3+])S)F)[NH3+]" # _pdbx_chem_comp_identifier.comp_id R4T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "[9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-azaniumylpurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-yl]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R4T "Create component" 2020-09-02 PDBE R4T "Modify atom id" 2021-09-29 PDBE R4T "Initial release" 2021-10-06 RCSB ##