data_R52 # _chem_comp.id R52 _chem_comp.name 5-O-phosphono-D-ribose _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces R51 _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R52 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VVP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R52 O2 O2 O 0 1 N N N 24.355 -6.124 14.255 -5.273 -0.060 -0.632 O2 R52 1 R52 C1 C1 C 0 1 N N N 25.392 -6.776 14.215 -4.414 -0.664 -0.037 C1 R52 2 R52 O3 O3 O 0 1 N N N 24.297 -8.894 13.776 -3.323 1.460 0.188 O3 R52 3 R52 C3 C3 C 0 1 N N R 26.766 -8.790 13.557 -1.941 -0.498 -0.127 C3 R52 4 R52 O4 O4 O 0 1 N N N 27.039 -9.565 12.376 -1.832 -1.887 0.189 O4 R52 5 R52 C2 C2 C 0 1 N N R 26.840 -9.670 14.804 -0.723 0.248 0.422 C2 R52 6 R52 O5 O5 O 0 1 N N N 26.662 -8.830 15.951 -0.832 1.637 0.107 O5 R52 7 R52 C5 C5 C 0 1 N N N 28.178 -10.404 14.895 0.550 -0.320 -0.209 C5 R52 8 R52 C4 C4 C 0 1 N N R 25.409 -8.073 13.418 -3.214 0.070 0.504 C4 R52 9 R52 O6 O6 O 0 1 N N N 28.296 -11.131 16.138 1.693 0.294 0.389 O6 R52 10 R52 P1 P1 P 0 1 N N N 29.495 -12.197 16.353 3.204 -0.065 -0.035 P1 R52 11 R52 O9 O9 O 0 1 N N N 29.587 -12.991 15.072 3.418 -1.524 0.093 O9 R52 12 R52 O7 O7 O 0 1 N N N 29.028 -13.027 17.546 3.454 0.382 -1.561 O7 R52 13 R52 O8 O8 O 0 1 N N N 30.750 -11.390 16.592 4.232 0.715 0.929 O8 R52 14 R52 H4 H4 H 0 1 N N N 25.297 -7.840 12.349 -3.170 -0.054 1.586 H4 R52 15 R52 H3 H3 H 0 1 N N N 24.324 -9.076 14.708 -3.368 1.645 -0.760 H3 R52 16 R52 HA HA H 0 1 N N N 27.535 -8.012 13.671 -1.985 -0.373 -1.209 HA R52 17 R52 HB HB H 0 1 N N N 27.099 -8.987 11.624 -1.788 -2.073 1.137 HB R52 18 R52 H2 H2 H 0 1 N N N 26.052 -10.435 14.755 -0.679 0.123 1.504 H2 R52 19 R52 H5 H5 H 0 1 N N N 26.623 -9.367 16.734 -0.877 1.823 -0.841 H5 R52 20 R52 H5C1 1H5C H 0 0 N N N 28.251 -11.115 14.059 0.588 -1.397 -0.044 H5C1 R52 21 R52 H5C2 2H5C H 0 0 N N N 28.987 -9.660 14.850 0.546 -0.117 -1.280 H5C2 R52 22 R52 H7 H7 H 0 1 N N N 28.931 -13.935 17.282 3.331 1.328 -1.719 H7 R52 23 R52 H8 H8 H 0 1 N N N 31.181 -11.221 15.762 5.163 0.544 0.730 H8 R52 24 R52 HC HC H 0 1 N N N 26.276 -6.437 14.735 -4.507 -1.730 0.111 HC R52 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R52 O2 C1 DOUB N N 1 R52 C1 C4 SING N N 2 R52 O3 C4 SING N N 3 R52 C3 O4 SING N N 4 R52 C3 C2 SING N N 5 R52 C3 C4 SING N N 6 R52 C2 O5 SING N N 7 R52 C2 C5 SING N N 8 R52 C5 O6 SING N N 9 R52 O6 P1 SING N N 10 R52 P1 O9 DOUB N N 11 R52 P1 O7 SING N N 12 R52 P1 O8 SING N N 13 R52 C4 H4 SING N N 14 R52 O3 H3 SING N N 15 R52 C3 HA SING N N 16 R52 O4 HB SING N N 17 R52 C2 H2 SING N N 18 R52 O5 H5 SING N N 19 R52 C5 H5C1 SING N N 20 R52 C5 H5C2 SING N N 21 R52 O7 H7 SING N N 22 R52 O8 H8 SING N N 23 R52 C1 HC SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R52 SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)C=O" R52 SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)C=O" R52 SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)C=O" R52 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@H](C=O)O)O)O)OP(=O)(O)O" R52 SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C=O)O)O)O)OP(=O)(O)O" R52 InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1" R52 InChIKey InChI 1.03 PPQRONHOSHZGFQ-LMVFSUKVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R52 "SYSTEMATIC NAME" ACDLabs 10.04 5-O-phosphono-D-ribose R52 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R)-2,3,4-trihydroxy-5-oxo-pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R52 "Create component" 2008-06-10 EBI R52 "Modify descriptor" 2011-06-04 RCSB #