data_R6R # _chem_comp.id R6R _chem_comp.name "3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H24 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.517 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R6R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BR7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R6R N1 N1 N 0 1 N N N N N N 27.476 21.743 4.609 4.370 -0.655 -0.218 N1 R6R 1 R6R C5 C1 C 0 1 N N N N N N 29.668 20.675 4.373 6.307 0.778 0.168 C5 R6R 2 R6R C6 C2 C 0 1 N N N N N N 28.179 20.548 4.076 5.259 0.326 -0.856 C6 R6R 3 R6R C7 C3 C 0 1 N N N N N N 31.492 22.031 3.555 8.233 -0.604 0.776 C7 R6R 4 R6R C10 C4 C 0 1 Y N N N N N 33.287 23.841 3.508 10.061 -0.107 -0.842 C10 R6R 5 R6R C13 C5 C 0 1 Y N N N N N 32.146 25.069 1.282 9.808 2.612 -0.355 C13 R6R 6 R6R C15 C6 C 0 1 N N N N N N 26.346 21.560 5.294 3.036 -0.465 -0.204 C15 R6R 7 R6R C20 C7 C 0 1 Y N N N N N 22.376 20.111 6.310 -1.408 -1.029 -0.137 C20 R6R 8 R6R C21 C8 C 0 1 Y N N N N N 20.975 20.188 6.279 -2.748 -1.241 -0.525 C21 R6R 9 R6R C22 C9 C 0 1 Y N N N N N 20.259 19.951 7.461 -3.673 -0.266 -0.300 C22 R6R 10 R6R C24 C10 C 0 1 Y N N N N N 22.314 19.593 8.670 -2.058 1.212 0.704 C24 R6R 11 R6R C26 C11 C 0 1 N N N N N N 18.076 19.888 6.543 -6.009 0.037 0.042 C26 R6R 12 R6R C11 C12 C 0 1 Y N N N N N 33.873 24.989 2.968 10.871 0.792 -1.503 C11 R6R 13 R6R C12 C13 C 0 1 Y N N N N N 33.302 25.603 1.854 10.746 2.149 -1.261 C12 R6R 14 R6R C14 C14 C 0 1 Y N N N N N 31.566 23.921 1.824 8.987 1.723 0.308 C14 R6R 15 R6R C9 C15 C 0 1 Y N N N N N 32.130 23.300 2.939 9.109 0.354 0.069 C9 R6R 16 R6R O8 O1 O 0 1 N N N N N N 32.196 21.081 3.901 8.717 -1.564 1.346 O8 R6R 17 R6R N4 N2 N 0 1 N N N N N N 30.174 21.933 3.764 6.899 -0.415 0.791 N4 R6R 18 R6R C3 C16 C 0 1 N N N N N N 29.218 23.031 3.387 6.010 -1.403 1.427 C3 R6R 19 R6R C2 C17 C 0 1 N N N N N N 28.036 23.106 4.372 4.962 -1.850 0.400 C2 R6R 20 R6R O28 O2 O 0 1 N N N N N N 25.716 22.513 5.756 2.558 0.522 -0.721 O28 R6R 21 R6R C16 C18 C 0 1 N N N N N N 25.854 20.124 5.485 2.137 -1.480 0.455 C16 R6R 22 R6R N17 N3 N 0 1 Y N N N N N 24.504 20.077 6.064 0.743 -1.048 0.336 N17 R6R 23 R6R N18 N4 N 0 1 Y N N N N N 24.334 19.816 7.252 0.247 0.190 0.761 N18 R6R 24 R6R C27 C19 C 0 1 Y N N N N N 23.346 20.270 5.409 -0.246 -1.775 -0.203 C27 R6R 25 R6R C19 C20 C 0 1 Y N N N N N 23.028 19.821 7.501 -1.047 0.246 0.502 C19 R6R 26 R6R C23 C21 C 0 1 Y N N N N N 20.931 19.668 8.650 -3.327 0.948 0.309 C23 R6R 27 R6R N25 N5 N 0 1 N N N N N N 18.934 19.989 7.563 -5.001 -0.483 -0.687 N25 R6R 28 R6R O29 O3 O 0 1 N N N N N N 18.367 19.814 5.351 -5.770 0.611 1.087 O29 R6R 29 R6R C31 C22 C 0 1 Y N N N N N 16.633 19.960 6.989 -7.404 -0.090 -0.429 C31 R6R 30 R6R C30 C23 C 0 1 Y N N N N N 16.290 19.434 8.226 -8.449 0.448 0.324 C30 R6R 31 R6R C35 C24 C 0 1 Y N N N N N 15.676 20.561 6.193 -7.681 -0.743 -1.631 C35 R6R 32 R6R C34 C25 C 0 1 Y N N N N N 14.356 20.621 6.638 -8.986 -0.858 -2.065 C34 R6R 33 R6R C33 C26 C 0 1 Y N N N N N 14.007 20.092 7.873 -10.018 -0.327 -1.312 C33 R6R 34 R6R C32 C27 C 0 1 Y N N N N N 14.980 19.496 8.672 -9.750 0.326 -0.122 C32 R6R 35 R6R N36 N6 N 2 1 N N N N N N 14.659 18.961 9.847 -10.860 0.895 0.675 N36 R6R 36 R6R O38 O4 O 0 1 N N N N N N 15.663 18.444 10.708 -12.008 0.788 0.283 O38 R6R 37 R6R O37 O5 O 0 1 N N N N N N 13.302 18.838 10.221 -10.625 1.470 1.723 O37 R6R 38 R6R H1 H1 H 0 1 N N N N N N 30.205 19.815 3.945 7.084 1.353 -0.334 H1 R6R 39 R6R H2 H2 H 0 1 N N N N N N 29.827 20.701 5.461 5.831 1.393 0.931 H2 R6R 40 R6R H3 H3 H 0 1 N N N N N N 28.024 20.483 2.989 5.756 -0.133 -1.711 H3 R6R 41 R6R H4 H4 H 0 1 N N N N N N 27.783 19.642 4.557 4.676 1.186 -1.187 H4 R6R 42 R6R H5 H5 H 0 1 N N N N N N 33.731 23.368 4.371 10.160 -1.166 -1.032 H5 R6R 43 R6R H6 H6 H 0 1 N N N N N N 31.701 25.544 0.420 9.715 3.672 -0.171 H6 R6R 44 R6R H7 H7 H 0 1 N N N N N N 20.458 20.426 5.361 -3.038 -2.168 -0.996 H7 R6R 45 R6R H8 H8 H 0 1 N N N N N N 22.833 19.359 9.588 -1.820 2.156 1.171 H8 R6R 46 R6R H9 H9 H 0 1 N N N N N N 34.767 25.400 3.413 11.606 0.437 -2.211 H9 R6R 47 R6R H10 H10 H 0 1 N N N N N N 33.753 26.490 1.434 11.382 2.849 -1.781 H10 R6R 48 R6R H11 H11 H 0 1 N N N N N N 30.673 23.510 1.377 8.256 2.086 1.015 H11 R6R 49 R6R H12 H12 H 0 1 N N N N N N 29.754 23.992 3.396 6.594 -2.264 1.754 H12 R6R 50 R6R H13 H13 H 0 1 N N N N N N 28.830 22.837 2.376 5.512 -0.949 2.284 H13 R6R 51 R6R H14 H14 H 0 1 N N N N N N 28.385 23.527 5.327 4.184 -2.428 0.899 H14 R6R 52 R6R H15 H15 H 0 1 N N N N N N 27.252 23.753 3.951 5.439 -2.460 -0.367 H15 R6R 53 R6R H16 H16 H 0 1 N N N N N N 25.839 19.621 4.507 2.261 -2.447 -0.034 H16 R6R 54 R6R H17 H17 H 0 1 N N N N N N 26.547 19.598 6.157 2.402 -1.570 1.508 H17 R6R 55 R6R H18 H18 H 0 1 N N N N N N 23.225 20.507 4.362 -0.151 -2.769 -0.617 H18 R6R 56 R6R H19 H19 H 0 1 N N N N N N 20.371 19.507 9.559 -4.092 1.694 0.468 H19 R6R 57 R6R H20 H20 H 0 1 N N N N N N 18.547 20.102 8.478 -5.196 -1.007 -1.479 H20 R6R 58 R6R H21 H21 H 0 1 N N N N N N 17.047 18.974 8.844 -8.241 0.957 1.253 H21 R6R 59 R6R H22 H22 H 0 1 N N N N N N 15.948 20.980 5.236 -6.877 -1.157 -2.220 H22 R6R 60 R6R H23 H23 H 0 1 N N N N N N 13.601 21.082 6.018 -9.202 -1.363 -2.995 H23 R6R 61 R6R H24 H24 H 0 1 N N N N N N 12.983 20.142 8.214 -11.037 -0.419 -1.656 H24 R6R 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R6R C13 C14 DOUB Y N 1 R6R C13 C12 SING Y N 2 R6R C14 C9 SING Y N 3 R6R C12 C11 DOUB Y N 4 R6R C9 C10 DOUB Y N 5 R6R C9 C7 SING N N 6 R6R C11 C10 SING Y N 7 R6R C3 N4 SING N N 8 R6R C3 C2 SING N N 9 R6R C7 N4 SING N N 10 R6R C7 O8 DOUB N N 11 R6R N4 C5 SING N N 12 R6R C6 C5 SING N N 13 R6R C6 N1 SING N N 14 R6R C2 N1 SING N N 15 R6R N1 C15 SING N N 16 R6R C15 C16 SING N N 17 R6R C15 O28 DOUB N N 18 R6R O29 C26 DOUB N N 19 R6R C27 N17 SING Y N 20 R6R C27 C20 DOUB Y N 21 R6R C16 N17 SING N N 22 R6R N17 N18 SING Y N 23 R6R C35 C34 DOUB Y N 24 R6R C35 C31 SING Y N 25 R6R C21 C20 SING Y N 26 R6R C21 C22 DOUB Y N 27 R6R C20 C19 SING Y N 28 R6R C26 C31 SING N N 29 R6R C26 N25 SING N N 30 R6R C34 C33 SING Y N 31 R6R C31 C30 DOUB Y N 32 R6R N18 C19 DOUB Y N 33 R6R C22 N25 SING N N 34 R6R C22 C23 SING Y N 35 R6R C19 C24 SING Y N 36 R6R C33 C32 DOUB Y N 37 R6R C30 C32 SING Y N 38 R6R C23 C24 DOUB Y N 39 R6R C32 N36 SING N N 40 R6R N36 O37 DOUB N N 41 R6R N36 O38 DOUB N N 42 R6R C5 H1 SING N N 43 R6R C5 H2 SING N N 44 R6R C6 H3 SING N N 45 R6R C6 H4 SING N N 46 R6R C10 H5 SING N N 47 R6R C13 H6 SING N N 48 R6R C21 H7 SING N N 49 R6R C24 H8 SING N N 50 R6R C11 H9 SING N N 51 R6R C12 H10 SING N N 52 R6R C14 H11 SING N N 53 R6R C3 H12 SING N N 54 R6R C3 H13 SING N N 55 R6R C2 H14 SING N N 56 R6R C2 H15 SING N N 57 R6R C16 H16 SING N N 58 R6R C16 H17 SING N N 59 R6R C27 H18 SING N N 60 R6R C23 H19 SING N N 61 R6R N25 H20 SING N N 62 R6R C30 H21 SING N N 63 R6R C35 H22 SING N N 64 R6R C34 H23 SING N N 65 R6R C33 H24 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R6R InChI InChI 1.06 "InChI=1S/C27H24N6O5/c34-25(30-11-13-31(14-12-30)27(36)19-5-2-1-3-6-19)18-32-17-21-15-22(9-10-24(21)29-32)28-26(35)20-7-4-8-23(16-20)33(37)38/h1-10,15-17H,11-14,18H2,(H,28,35)" R6R InChIKey InChI 1.06 TUROMDAKFFLACO-UHFFFAOYSA-N R6R SMILES_CANONICAL CACTVS 3.385 "O=C(Cn1cc2cc(NC(=O)c3cccc(c3)[N](=O)=O)ccc2n1)N4CCN(CC4)C(=O)c5ccccc5" R6R SMILES CACTVS 3.385 "O=C(Cn1cc2cc(NC(=O)c3cccc(c3)[N](=O)=O)ccc2n1)N4CCN(CC4)C(=O)c5ccccc5" R6R SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2CCN(CC2)C(=O)Cn3cc4cc(ccc4n3)NC(=O)c5cccc(c5)N(=O)=O" R6R SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2CCN(CC2)C(=O)Cn3cc4cc(ccc4n3)NC(=O)c5cccc(c5)N(=O)=O" # _pdbx_chem_comp_identifier.comp_id R6R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R6R "Create component" 2022-11-23 PDBE R6R "Initial release" 2024-01-31 RCSB #