data_R6U # _chem_comp.id R6U _chem_comp.name "(1,3-dimethylimidazol-1-ium-2-yl)-tris(oxidanyl)ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N2 O3 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-01-04 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R6U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R6U RU RU1 RU 0 0 N N N N N N -28.832 29.480 18.686 -0.987 0.012 -0.005 RU R6U 1 R6U O1 O1 O 0 1 N N N N N N -30.935 28.958 18.838 -1.594 -0.004 -1.742 O1 R6U 2 R6U O2 O2 O 0 1 N N N N N N -28.739 29.269 17.468 -1.589 1.531 0.841 O2 R6U 3 R6U O3 O3 O 0 1 N N N N N N -29.296 31.278 18.272 -1.617 -1.474 0.878 O3 R6U 4 R6U C33 C1 C 0 1 N N N N N N -25.917 31.641 20.014 1.330 2.456 -0.029 C33 R6U 5 R6U N4 N1 N 0 1 Y N N N N N -25.928 30.926 18.905 1.783 1.063 -0.009 N4 R6U 6 R6U C29 C2 C 0 1 Y N N N N N -26.836 30.078 18.440 1.003 -0.006 0.002 C29 R6U 7 R6U C32 C3 C 0 1 Y N N N N N -24.849 30.976 18.123 3.067 0.649 -0.004 C32 R6U 8 R6U C31 C4 C 0 1 Y N N N N N -25.079 30.202 17.090 3.055 -0.699 0.015 C31 R6U 9 R6U N3 N2 N 1 1 Y N N N N N -26.326 29.627 17.232 1.763 -1.089 0.019 N3 R6U 10 R6U C30 C5 C 0 1 N N N N N N -26.691 28.807 16.230 1.285 -2.474 0.038 C30 R6U 11 R6U H1 H1 H 0 1 N N N N N N -31.222 29.057 19.738 -1.314 -0.777 -2.250 H1 R6U 12 R6U H2 H2 H 0 1 N N N N N N -28.494 28.363 17.321 -1.306 1.605 1.763 H2 R6U 13 R6U H3 H3 H 0 1 N N N N N N -29.448 31.760 19.077 -2.582 -1.530 0.914 H3 R6U 14 R6U H4 H4 H 0 1 N N N N N N -26.867 31.500 20.551 1.214 2.815 0.994 H4 R6U 15 R6U H5 H5 H 0 1 N N N N N N -25.083 31.314 20.652 2.066 3.070 -0.547 H5 R6U 16 R6U H6 H6 H 0 1 N N N N N N -25.792 32.705 19.763 0.374 2.520 -0.547 H6 R6U 17 R6U H7 H7 H 0 1 N N N N N N -23.952 31.548 18.307 3.943 1.280 -0.014 H7 R6U 18 R6U H8 H8 H 0 1 N N N N N N -24.403 30.041 16.263 3.919 -1.347 0.026 H8 R6U 19 R6U H9 H9 H 0 1 N N N N N N -27.693 28.401 16.434 1.164 -2.802 1.070 H9 R6U 20 R6U H10 H10 H 0 1 N N N N N N -26.709 29.369 15.285 0.326 -2.534 -0.477 H10 R6U 21 R6U H11 H11 H 0 1 N N N N N N -25.970 27.980 16.152 2.008 -3.115 -0.466 H11 R6U 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R6U C30 N3 SING N N 1 R6U C31 N3 SING Y N 2 R6U C31 C32 DOUB Y N 3 R6U N3 C29 DOUB Y N 4 R6U O2 RU SING N N 5 R6U C32 N4 SING Y N 6 R6U O3 RU SING N N 7 R6U C29 RU SING N N 8 R6U C29 N4 SING Y N 9 R6U RU O1 SING N N 10 R6U N4 C33 SING N N 11 R6U O1 H1 SING N N 12 R6U O2 H2 SING N N 13 R6U O3 H3 SING N N 14 R6U C33 H4 SING N N 15 R6U C33 H5 SING N N 16 R6U C33 H6 SING N N 17 R6U C32 H7 SING N N 18 R6U C31 H8 SING N N 19 R6U C30 H9 SING N N 20 R6U C30 H10 SING N N 21 R6U C30 H11 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R6U InChI InChI 1.06 "InChI=1S/C5H8N2.3H2O.Ru/c1-6-3-4-7(2)5-6;;;;/h3-4H,1-2H3;3*1H2;/q+1;;;;+3/p-3" R6U InChIKey InChI 1.06 NXUITYSMOYFBJL-UHFFFAOYSA-K R6U SMILES_CANONICAL CACTVS 3.385 "Cn1cc[n+](C)c1[Ru](O)(O)O" R6U SMILES CACTVS 3.385 "Cn1cc[n+](C)c1[Ru](O)(O)O" R6U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)O)C" R6U SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)O)C" # _pdbx_chem_comp_identifier.comp_id R6U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1,3-dimethylimidazol-1-ium-2-yl)-tris(oxidanyl)ruthenium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R6U "Create component" 2023-01-04 PDBE R6U "Initial release" 2024-01-10 RCSB #