data_R6W # _chem_comp.id R6W _chem_comp.name "(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H40 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-10 _chem_comp.pdbx_modified_date 2020-11-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 668.783 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R6W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ACA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R6W C4 C1 C 0 1 Y N N 46.209 5.415 82.198 5.728 -0.873 1.511 C4 R6W 1 R6W C5 C2 C 0 1 Y N N 47.178 5.295 83.191 6.585 -1.362 0.556 C5 R6W 2 R6W C6 C3 C 0 1 Y N N 48.101 6.303 83.403 7.470 -2.401 0.864 C6 R6W 3 R6W C7 C4 C 0 1 N N S 47.436 4.162 84.165 6.826 -1.012 -0.891 C7 R6W 4 R6W C15 C5 C 0 1 Y N N 48.651 2.629 82.384 8.580 0.962 -0.628 C15 R6W 5 R6W C17 C6 C 0 1 Y N N 49.494 0.675 81.172 9.649 3.127 -0.661 C17 R6W 6 R6W C20 C7 C 0 1 N N N 46.784 1.245 85.319 5.136 1.344 -2.000 C20 R6W 7 R6W C24 C8 C 0 1 N N N 47.956 0.055 88.735 1.874 1.330 -0.115 C24 R6W 8 R6W C26 C9 C 0 1 N N N 49.402 -1.694 89.919 -0.516 1.348 0.615 C26 R6W 9 R6W C28 C10 C 0 1 N N N 50.582 -3.602 91.098 -2.905 1.365 1.344 C28 R6W 10 R6W C1 C11 C 0 1 Y N N 48.056 7.467 82.641 7.476 -2.939 2.154 C1 R6W 11 R6W C2 C12 C 0 1 Y N N 47.090 7.604 81.658 6.614 -2.445 3.108 C2 R6W 12 R6W C3 C13 C 0 1 Y N N 46.168 6.579 81.435 5.742 -1.409 2.795 C3 R6W 13 R6W N8 N1 N 0 1 N N N 48.597 4.710 84.926 7.887 -1.912 -1.359 N8 R6W 14 R6W C9 C14 C 0 1 N N N 48.990 5.926 84.520 8.255 -2.711 -0.343 C9 R6W 15 R6W O10 O1 O 0 1 N N N 49.911 6.587 84.990 9.115 -3.569 -0.411 O10 R6W 16 R6W C11 C15 C 0 1 Y N N 47.835 2.837 83.556 7.273 0.422 -1.011 C11 R6W 17 R6W C12 C16 C 0 1 Y N N 47.566 1.606 84.078 6.550 1.447 -1.488 C12 R6W 18 R6W N13 N2 N 0 1 Y N N 48.090 0.630 83.265 7.287 2.599 -1.443 N13 R6W 19 R6W C14 C17 C 0 1 Y N N 48.789 1.235 82.234 8.534 2.337 -0.922 C14 R6W 20 R6W C16 C18 C 0 1 Y N N 49.230 3.465 81.426 9.736 0.405 -0.077 C16 R6W 21 R6W C18 C19 C 0 1 Y N N 50.087 1.531 80.254 10.782 2.556 -0.125 C18 R6W 22 R6W C19 C20 C 0 1 Y N N 49.949 2.912 80.375 10.821 1.200 0.169 C19 R6W 23 R6W N21 N3 N 0 1 N N N 47.712 0.790 86.368 4.206 1.314 -0.863 N21 R6W 24 R6W O22 O2 O 0 1 N N N 45.228 6.734 80.462 4.896 -0.927 3.740 O22 R6W 25 R6W C23 C21 C 0 1 N N N 47.022 0.270 87.553 2.811 1.362 -1.324 C23 R6W 26 R6W C25 C22 C 0 1 N N N 48.817 -1.197 88.605 0.422 1.380 -0.594 C25 R6W 27 R6W C27 C23 C 0 1 N N N 50.309 -2.911 89.775 -1.968 1.398 0.135 C27 R6W 28 R6W C29 C24 C 0 1 Y N N 58.548 -5.355 94.184 -7.263 -2.899 -2.225 C29 R6W 29 R6W C30 C25 C 0 1 Y N N 58.568 -5.867 95.470 -6.377 -2.351 -3.126 C30 R6W 30 R6W C31 C26 C 0 1 Y N N 57.395 -5.910 96.224 -5.555 -1.296 -2.747 C31 R6W 31 R6W C32 C27 C 0 1 Y N N 56.188 -5.470 95.679 -5.624 -0.789 -1.453 C32 R6W 32 R6W C33 C28 C 0 1 Y N N 56.183 -4.954 94.383 -6.505 -1.332 -0.551 C33 R6W 33 R6W C34 C29 C 0 1 Y N N 57.352 -4.887 93.647 -7.340 -2.390 -0.926 C34 R6W 34 R6W C35 C30 C 0 1 N N S 55.039 -4.379 93.563 -6.825 -1.028 0.892 C35 R6W 35 R6W N36 N4 N 0 1 N N N 55.750 -4.034 92.303 -7.872 -1.977 1.288 N36 R6W 36 R6W C37 C31 C 0 1 N N N 57.065 -4.300 92.323 -8.168 -2.758 0.235 C37 R6W 37 R6W O38 O3 O 0 1 N N N 57.870 -4.118 91.413 -9.000 -3.645 0.242 O38 R6W 38 R6W C39 C32 C 0 1 Y N N 54.320 -3.168 94.130 -7.329 0.386 1.024 C39 R6W 39 R6W C40 C33 C 0 1 Y N N 53.004 -2.853 93.940 -6.647 1.435 1.510 C40 R6W 40 R6W N41 N5 N 0 1 Y N N 52.709 -1.670 94.579 -7.430 2.557 1.475 N41 R6W 41 R6W C42 C34 C 0 1 Y N N 53.866 -1.172 95.154 -8.665 2.249 0.951 C42 R6W 42 R6W C43 C35 C 0 1 Y N N 54.905 -2.088 94.885 -8.655 0.877 0.640 C43 R6W 43 R6W C44 C36 C 0 1 Y N N 56.185 -1.807 95.367 -9.787 0.280 0.082 C44 R6W 44 R6W C45 C37 C 0 1 Y N N 54.084 -0.001 95.872 -9.811 2.996 0.698 C45 R6W 45 R6W C46 C38 C 0 1 Y N N 55.363 0.245 96.352 -10.920 2.386 0.153 C46 R6W 46 R6W C47 C39 C 0 1 Y N N 56.404 -0.643 96.097 -10.900 1.034 -0.163 C47 R6W 47 R6W C48 C40 C 0 1 N N N 51.925 -3.590 93.196 -5.230 1.384 2.020 C48 R6W 48 R6W N49 N6 N 0 1 N N N 51.596 -2.880 91.925 -4.299 1.413 0.884 N49 R6W 49 R6W O50 O4 O 0 1 N N N 57.478 -6.431 97.484 -4.684 -0.761 -3.639 O50 R6W 50 R6W H1 H1 H 0 1 N N N 45.501 4.618 82.023 5.048 -0.071 1.267 H1 R6W 51 R6W H2 H2 H 0 1 N N N 46.569 4.029 84.829 5.917 -1.171 -1.471 H2 R6W 52 R6W H3 H3 H 0 1 N N N 49.577 -0.396 81.065 9.627 4.184 -0.882 H3 R6W 53 R6W H4 H4 H 0 1 N N N 46.233 2.128 85.675 4.914 2.205 -2.629 H4 R6W 54 R6W H5 H5 H 0 1 N N N 46.073 0.439 85.083 5.027 0.430 -2.583 H5 R6W 55 R6W H6 H6 H 0 1 N N N 48.620 0.928 88.818 2.039 0.412 0.449 H6 R6W 56 R6W H7 H7 H 0 1 N N N 47.349 -0.032 89.648 2.076 2.190 0.524 H7 R6W 57 R6W H8 H8 H 0 1 N N N 49.987 -0.878 90.367 -0.350 0.429 1.178 H8 R6W 58 R6W H9 H9 H 0 1 N N N 48.571 -1.960 90.589 -0.314 2.207 1.254 H9 R6W 59 R6W H10 H10 H 0 1 N N N 49.642 -3.661 91.666 -2.740 0.447 1.908 H10 R6W 60 R6W H11 H11 H 0 1 N N N 50.952 -4.618 90.895 -2.704 2.225 1.983 H11 R6W 61 R6W H12 H12 H 0 1 N N N 48.770 8.258 82.815 8.155 -3.741 2.402 H12 R6W 62 R6W H13 H13 H 0 1 N N N 47.050 8.505 81.063 6.619 -2.862 4.104 H13 R6W 63 R6W H14 H14 H 0 1 N N N 49.042 4.215 85.672 8.260 -1.928 -2.254 H14 R6W 64 R6W H15 H15 H 0 1 N N N 47.984 -0.356 83.396 6.977 3.470 -1.735 H15 R6W 65 R6W H16 H16 H 0 1 N N N 49.119 4.537 81.503 9.773 -0.649 0.155 H16 R6W 66 R6W H17 H17 H 0 1 N N N 50.662 1.122 79.437 11.647 3.171 0.075 H17 R6W 67 R6W H18 H18 H 0 1 N N N 50.407 3.560 79.642 11.717 0.768 0.590 H18 R6W 68 R6W H19 H19 H 0 1 N N N 48.289 0.066 85.991 4.368 0.504 -0.284 H19 R6W 69 R6W H21 H21 H 0 1 N N N 44.677 5.961 80.428 5.261 -0.199 4.260 H21 R6W 70 R6W H22 H22 H 0 1 N N N 46.242 0.987 87.848 2.610 0.503 -1.963 H22 R6W 71 R6W H23 H23 H 0 1 N N N 46.556 -0.692 87.294 2.646 2.281 -1.887 H23 R6W 72 R6W H24 H24 H 0 1 N N N 48.196 -1.999 88.179 0.257 2.299 -1.158 H24 R6W 73 R6W H25 H25 H 0 1 N N N 49.648 -0.974 87.920 0.220 0.521 -1.233 H25 R6W 74 R6W H26 H26 H 0 1 N N N 49.827 -3.630 89.096 -2.133 2.316 -0.428 H26 R6W 75 R6W H27 H27 H 0 1 N N N 51.267 -2.586 89.344 -2.169 0.538 -0.504 H27 R6W 76 R6W H28 H28 H 0 1 N N N 59.456 -5.319 93.600 -7.900 -3.718 -2.524 H28 R6W 77 R6W H29 H29 H 0 1 N N N 59.493 -6.234 95.890 -6.321 -2.742 -4.131 H29 R6W 78 R6W H30 H30 H 0 1 N N N 55.274 -5.528 96.251 -4.984 0.030 -1.158 H30 R6W 79 R6W H31 H31 H 0 1 N N N 54.304 -5.173 93.365 -5.938 -1.168 1.510 H31 R6W 80 R6W H32 H32 H 0 1 N N N 55.288 -3.638 91.509 -8.284 -2.029 2.164 H32 R6W 81 R6W H33 H33 H 0 1 N N N 51.807 -1.241 94.621 -7.155 3.437 1.774 H33 R6W 82 R6W H34 H34 H 0 1 N N N 57.000 -2.489 95.174 -9.782 -0.773 -0.156 H34 R6W 83 R6W H35 H35 H 0 1 N N N 53.280 0.698 96.051 -9.832 4.051 0.928 H35 R6W 84 R6W H36 H36 H 0 1 N N N 55.553 1.137 96.931 -11.808 2.968 -0.042 H36 R6W 85 R6W H37 H37 H 0 1 N N N 57.394 -0.426 96.470 -11.775 0.572 -0.595 H37 R6W 86 R6W H38 H38 H 0 1 N N N 51.024 -3.646 93.824 -5.045 2.244 2.664 H38 R6W 87 R6W H39 H39 H 0 1 N N N 52.274 -4.607 92.964 -5.081 0.466 2.588 H39 R6W 88 R6W H40 H40 H 0 1 N N N 52.434 -2.783 91.388 -4.461 2.224 0.305 H40 R6W 89 R6W H42 H42 H 0 1 N N N 56.622 -6.406 97.894 -5.050 -0.030 -4.156 H42 R6W 90 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R6W C18 C19 DOUB Y N 1 R6W C18 C17 SING Y N 2 R6W C19 C16 SING Y N 3 R6W O22 C3 SING N N 4 R6W C17 C14 DOUB Y N 5 R6W C16 C15 DOUB Y N 6 R6W C3 C2 DOUB Y N 7 R6W C3 C4 SING Y N 8 R6W C2 C1 SING Y N 9 R6W C4 C5 DOUB Y N 10 R6W C14 C15 SING Y N 11 R6W C14 N13 SING Y N 12 R6W C15 C11 SING Y N 13 R6W C1 C6 DOUB Y N 14 R6W C5 C6 SING Y N 15 R6W C5 C7 SING N N 16 R6W N13 C12 SING Y N 17 R6W C6 C9 SING N N 18 R6W C11 C12 DOUB Y N 19 R6W C11 C7 SING N N 20 R6W C12 C20 SING N N 21 R6W C7 N8 SING N N 22 R6W C9 N8 SING N N 23 R6W C9 O10 DOUB N N 24 R6W C20 N21 SING N N 25 R6W N21 C23 SING N N 26 R6W C23 C24 SING N N 27 R6W C25 C24 SING N N 28 R6W C25 C26 SING N N 29 R6W C27 C26 SING N N 30 R6W C27 C28 SING N N 31 R6W C28 N49 SING N N 32 R6W O38 C37 DOUB N N 33 R6W N49 C48 SING N N 34 R6W N36 C37 SING N N 35 R6W N36 C35 SING N N 36 R6W C37 C34 SING N N 37 R6W C48 C40 SING N N 38 R6W C35 C39 SING N N 39 R6W C35 C33 SING N N 40 R6W C34 C29 DOUB Y N 41 R6W C34 C33 SING Y N 42 R6W C40 C39 DOUB Y N 43 R6W C40 N41 SING Y N 44 R6W C39 C43 SING Y N 45 R6W C29 C30 SING Y N 46 R6W C33 C32 DOUB Y N 47 R6W N41 C42 SING Y N 48 R6W C43 C42 DOUB Y N 49 R6W C43 C44 SING Y N 50 R6W C42 C45 SING Y N 51 R6W C44 C47 DOUB Y N 52 R6W C30 C31 DOUB Y N 53 R6W C32 C31 SING Y N 54 R6W C45 C46 DOUB Y N 55 R6W C47 C46 SING Y N 56 R6W C31 O50 SING N N 57 R6W C4 H1 SING N N 58 R6W C7 H2 SING N N 59 R6W C17 H3 SING N N 60 R6W C20 H4 SING N N 61 R6W C20 H5 SING N N 62 R6W C24 H6 SING N N 63 R6W C24 H7 SING N N 64 R6W C26 H8 SING N N 65 R6W C26 H9 SING N N 66 R6W C28 H10 SING N N 67 R6W C28 H11 SING N N 68 R6W C1 H12 SING N N 69 R6W C2 H13 SING N N 70 R6W N8 H14 SING N N 71 R6W N13 H15 SING N N 72 R6W C16 H16 SING N N 73 R6W C18 H17 SING N N 74 R6W C19 H18 SING N N 75 R6W N21 H19 SING N N 76 R6W O22 H21 SING N N 77 R6W C23 H22 SING N N 78 R6W C23 H23 SING N N 79 R6W C25 H24 SING N N 80 R6W C25 H25 SING N N 81 R6W C27 H26 SING N N 82 R6W C27 H27 SING N N 83 R6W C29 H28 SING N N 84 R6W C30 H29 SING N N 85 R6W C32 H30 SING N N 86 R6W C35 H31 SING N N 87 R6W N36 H32 SING N N 88 R6W N41 H33 SING N N 89 R6W C44 H34 SING N N 90 R6W C45 H35 SING N N 91 R6W C46 H36 SING N N 92 R6W C47 H37 SING N N 93 R6W C48 H38 SING N N 94 R6W C48 H39 SING N N 95 R6W N49 H40 SING N N 96 R6W O50 H42 SING N N 97 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R6W InChI InChI 1.03 "InChI=1S/C40H40N6O4/c47-23-13-15-25-29(19-23)37(45-39(25)49)35-27-9-3-5-11-31(27)43-33(35)21-41-17-7-1-2-8-18-42-22-34-36(28-10-4-6-12-32(28)44-34)38-30-20-24(48)14-16-26(30)40(50)46-38/h3-6,9-16,19-20,37-38,41-44,47-48H,1-2,7-8,17-18,21-22H2,(H,45,49)(H,46,50)/t37-,38-/m0/s1" R6W InChIKey InChI 1.03 LWNXLGGZVHNJBW-UWXQCODUSA-N R6W SMILES_CANONICAL CACTVS 3.385 "Oc1ccc2C(=O)N[C@@H](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[C@H]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38" R6W SMILES CACTVS 3.385 "Oc1ccc2C(=O)N[CH](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[CH]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38" R6W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)[C@@H]5c6cc(ccc6C(=O)N5)O)[C@@H]7c8cc(ccc8C(=O)N7)O" R6W SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)C5c6cc(ccc6C(=O)N5)O)C7c8cc(ccc8C(=O)N7)O" # _pdbx_chem_comp_identifier.comp_id R6W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R6W "Create component" 2020-09-10 PDBE R6W "Initial release" 2020-11-18 RCSB ##