data_R72 # _chem_comp.id R72 _chem_comp.name "4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H42 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-10 _chem_comp.pdbx_modified_date 2020-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R72 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ACD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R72 C18 C1 C 0 1 N N R -44.356 35.773 26.625 1.026 -0.900 0.243 C18 R72 1 R72 C14 C2 C 0 1 Y N N -44.501 31.674 24.381 -3.824 -1.346 0.571 C14 R72 2 R72 C11 C3 C 0 1 Y N N -42.866 30.417 23.049 -6.222 -1.474 0.783 C11 R72 3 R72 C17 C4 C 0 1 N N N -44.586 34.365 27.127 -0.118 -1.863 -0.082 C17 R72 4 R72 C10 C5 C 0 1 Y N N -45.609 30.905 23.710 -3.847 -0.082 1.166 C10 R72 5 R72 C15 C6 C 0 1 N N N -44.979 32.692 25.398 -2.542 -1.943 0.149 C15 R72 6 R72 C19 C7 C 0 1 N N N -45.262 36.018 25.409 0.747 0.461 -0.402 C19 R72 7 R72 C22 C8 C 0 1 N N N -42.900 35.923 26.243 2.339 -1.461 -0.308 C22 R72 8 R72 C20 C9 C 0 1 N N N -44.931 37.320 24.606 1.923 1.400 -0.123 C20 R72 9 R72 C24 C10 C 0 1 Y N N -41.655 38.109 25.935 4.656 -1.064 -0.384 C24 R72 10 R72 C26 C11 C 0 1 Y N N -40.145 39.365 27.314 5.883 -2.792 -1.290 C26 R72 11 R72 C01 C12 C 0 1 N N N -44.379 24.194 21.928 -11.285 1.128 -0.810 C01 R72 12 R72 C02 C13 C 0 1 N N N -43.200 24.739 22.768 -10.112 2.032 -1.195 C02 R72 13 R72 C03 C14 C 0 1 N N N -42.528 23.679 23.649 -10.525 2.939 -2.356 C03 R72 14 R72 C04 C15 C 0 1 N N N -42.158 25.285 21.790 -9.712 2.891 0.008 C04 R72 15 R72 C05 C16 C 0 1 N N N -42.627 26.611 21.164 -9.244 1.980 1.146 C05 R72 16 R72 C07 C17 C 0 1 N N N -43.511 28.633 21.366 -7.537 0.392 1.799 C07 R72 17 R72 C08 C18 C 0 1 Y N N -43.821 29.717 22.421 -6.232 -0.222 1.366 C08 R72 18 R72 C09 C19 C 0 1 Y N N -45.282 30.003 22.784 -5.047 0.470 1.558 C09 R72 19 R72 C12 C20 C 0 1 Y N N -43.237 31.469 24.103 -5.024 -2.045 0.382 C12 R72 20 R72 C21 C21 C 0 1 N N N -43.419 37.473 24.354 3.210 0.772 -0.663 C21 R72 21 R72 C28 C22 C 0 1 Y N N -40.240 39.795 24.985 7.032 -0.922 -0.586 C28 R72 22 R72 C30 C23 C 0 1 N N N -39.865 41.947 23.815 8.235 1.095 0.177 C30 R72 23 R72 C31 C24 C 0 1 Y N N -41.129 42.459 23.105 9.651 1.608 0.247 C31 R72 24 R72 C32 C25 C 0 1 Y N N -42.112 43.006 23.823 10.178 2.327 -0.809 C32 R72 25 R72 C33 C26 C 0 1 Y N N -43.323 43.594 23.109 11.477 2.797 -0.745 C33 R72 26 R72 C34 C27 C 0 1 Y N N -43.345 43.579 21.775 12.248 2.547 0.375 C34 R72 27 R72 C35 C28 C 0 1 Y N N -42.186 42.969 20.969 11.720 1.828 1.431 C35 R72 28 R72 C36 C29 C 0 1 Y N N -41.126 42.468 21.582 10.420 1.363 1.370 C36 R72 29 R72 C37 C30 C 0 1 Y N N -41.160 38.894 24.789 5.831 -0.342 -0.193 C37 R72 30 R72 C40 C31 C 0 1 N N N -44.100 27.074 22.797 -8.473 0.309 -0.434 C40 R72 31 R72 C41 C32 C 0 1 N N N -43.837 25.813 23.650 -8.919 1.171 -1.618 C41 R72 32 R72 N06 N1 N 0 1 N N N -43.095 27.536 22.023 -8.101 1.178 0.693 N06 R72 33 R72 N16 N2 N 0 1 N N N -43.988 33.448 26.173 -1.390 -1.270 0.337 N16 R72 34 R72 N23 N3 N 0 1 N N N -42.673 37.136 25.539 3.433 -0.527 -0.014 N23 R72 35 R72 N25 N4 N 0 1 Y N N -41.190 38.308 27.100 4.725 -2.276 -0.931 N25 R72 36 R72 N27 N5 N 0 1 Y N N -39.682 40.072 26.317 7.016 -2.139 -1.127 N27 R72 37 R72 N29 N6 N 0 1 N N N -39.762 40.527 23.793 8.230 -0.243 -0.418 N29 R72 38 R72 O13 O1 O 0 1 N N N -42.259 32.223 24.794 -5.013 -3.275 -0.190 O13 R72 39 R72 O38 O2 O 0 1 N N N -44.660 36.675 27.666 1.130 -0.744 1.660 O38 R72 40 R72 O39 O3 O 0 1 N N N -46.198 32.848 25.529 -2.526 -3.043 -0.369 O39 R72 41 R72 H1 H1 H 0 1 N N N -41.828 30.239 22.812 -7.149 -2.010 0.640 H1 R72 42 R72 H2 H2 H 0 1 N N N -45.665 34.169 27.208 -0.141 -2.051 -1.156 H2 R72 43 R72 H3 H3 H 0 1 N N N -44.115 34.238 28.113 0.037 -2.803 0.448 H3 R72 44 R72 H4 H4 H 0 1 N N N -46.642 31.080 23.972 -2.926 0.461 1.319 H4 R72 45 R72 H5 H5 H 0 1 N N N -46.301 36.087 25.763 0.628 0.336 -1.478 H5 R72 46 R72 H6 H6 H 0 1 N N N -45.163 35.160 24.728 -0.166 0.883 0.019 H6 R72 47 R72 H7 H7 H 0 1 N N N -42.609 35.077 25.603 2.547 -2.423 0.161 H7 R72 48 R72 H8 H8 H 0 1 N N N -42.288 35.919 27.157 2.253 -1.594 -1.386 H8 R72 49 R72 H9 H9 H 0 1 N N N -45.286 38.190 25.178 1.750 2.356 -0.615 H9 R72 50 R72 H10 H10 H 0 1 N N N -45.451 37.282 23.637 2.018 1.555 0.952 H10 R72 51 R72 H11 H11 H 0 1 N N N -39.769 39.544 28.310 5.904 -3.777 -1.731 H11 R72 52 R72 H12 H12 H 0 1 N N N -45.152 23.791 22.599 -11.567 0.516 -1.666 H12 R72 53 R72 H13 H13 H 0 1 N N N -44.806 25.008 21.324 -10.990 0.482 0.017 H13 R72 54 R72 H14 H14 H 0 1 N N N -44.017 23.395 21.264 -12.133 1.742 -0.507 H14 R72 55 R72 H15 H15 H 0 1 N N N -43.262 23.274 24.360 -11.373 3.554 -2.053 H15 R72 56 R72 H16 H16 H 0 1 N N N -42.144 22.866 23.016 -9.689 3.583 -2.629 H16 R72 57 R72 H17 H17 H 0 1 N N N -41.695 24.137 24.203 -10.807 2.327 -3.212 H17 R72 58 R72 H18 H18 H 0 1 N N N -41.995 24.548 20.990 -8.902 3.562 -0.277 H18 R72 59 R72 H19 H19 H 0 1 N N N -41.214 25.456 22.329 -10.570 3.476 0.339 H19 R72 60 R72 H20 H20 H 0 1 N N N -41.773 27.051 20.628 -8.945 2.589 1.999 H20 R72 61 R72 H21 H21 H 0 1 N N N -43.430 26.380 20.448 -10.059 1.318 1.440 H21 R72 62 R72 H22 H22 H 0 1 N N N -42.721 28.986 20.686 -8.236 -0.397 2.077 H22 R72 63 R72 H23 H23 H 0 1 N N N -44.417 28.403 20.787 -7.365 1.044 2.656 H23 R72 64 R72 H24 H24 H 0 1 N N N -46.066 29.460 22.277 -5.064 1.447 2.019 H24 R72 65 R72 H25 H25 H 0 1 N N N -43.119 36.803 23.535 3.120 0.630 -1.740 H25 R72 66 R72 H26 H26 H 0 1 N N N -43.202 38.514 24.074 4.052 1.432 -0.453 H26 R72 67 R72 H27 H27 H 0 1 N N N -38.983 42.372 23.314 7.816 1.048 1.182 H27 R72 68 R72 H28 H28 H 0 1 N N N -39.889 42.282 24.862 7.635 1.768 -0.435 H28 R72 69 R72 H29 H29 H 0 1 N N N -42.050 43.032 24.901 9.576 2.522 -1.684 H29 R72 70 R72 H30 H30 H 0 1 N N N -44.145 44.013 23.670 11.889 3.359 -1.570 H30 R72 71 R72 H31 H31 H 0 1 N N N -44.190 44.002 21.253 13.262 2.914 0.425 H31 R72 72 R72 H32 H32 H 0 1 N N N -42.238 42.949 19.890 12.321 1.637 2.308 H32 R72 73 R72 H33 H33 H 0 1 N N N -40.288 42.079 21.022 10.007 0.801 2.194 H33 R72 74 R72 H34 H34 H 0 1 N N N -41.556 38.724 23.799 5.810 0.644 0.247 H34 R72 75 R72 H35 H35 H 0 1 N N N -44.380 27.883 23.487 -9.292 -0.345 -0.133 H35 R72 76 R72 H36 H36 H 0 1 N N N -44.948 26.849 22.133 -7.615 -0.295 -0.728 H36 R72 77 R72 H37 H37 H 0 1 N N N -44.788 25.439 24.058 -9.211 0.527 -2.447 H37 R72 78 R72 H38 H38 H 0 1 N N N -43.156 26.063 24.477 -8.097 1.815 -1.929 H38 R72 79 R72 H40 H40 H 0 1 N N N -43.001 33.342 26.056 -1.403 -0.392 0.750 H40 R72 80 R72 H41 H41 H 0 1 N N N -40.288 40.200 23.008 9.063 -0.655 -0.695 H41 R72 81 R72 H42 H42 H 0 1 N N N -42.686 32.817 25.400 -5.100 -3.261 -1.153 H42 R72 82 R72 H43 H43 H 0 1 N N N -44.090 36.507 28.407 0.332 -0.390 2.076 H43 R72 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R72 C35 C36 DOUB Y N 1 R72 C35 C34 SING Y N 2 R72 C05 C04 SING N N 3 R72 C05 N06 SING N N 4 R72 C07 N06 SING N N 5 R72 C07 C08 SING N N 6 R72 C36 C31 SING Y N 7 R72 C34 C33 DOUB Y N 8 R72 C04 C02 SING N N 9 R72 C01 C02 SING N N 10 R72 N06 C40 SING N N 11 R72 C08 C09 DOUB Y N 12 R72 C08 C11 SING Y N 13 R72 C02 C03 SING N N 14 R72 C02 C41 SING N N 15 R72 C09 C10 SING Y N 16 R72 C40 C41 SING N N 17 R72 C11 C12 DOUB Y N 18 R72 C31 C30 SING N N 19 R72 C31 C32 DOUB Y N 20 R72 C33 C32 SING Y N 21 R72 C10 C14 DOUB Y N 22 R72 N29 C30 SING N N 23 R72 N29 C28 SING N N 24 R72 C12 C14 SING Y N 25 R72 C12 O13 SING N N 26 R72 C21 C20 SING N N 27 R72 C21 N23 SING N N 28 R72 C14 C15 SING N N 29 R72 C20 C19 SING N N 30 R72 C37 C28 DOUB Y N 31 R72 C37 C24 SING Y N 32 R72 C28 N27 SING Y N 33 R72 C15 O39 DOUB N N 34 R72 C15 N16 SING N N 35 R72 C19 C18 SING N N 36 R72 N23 C24 SING N N 37 R72 N23 C22 SING N N 38 R72 C24 N25 DOUB Y N 39 R72 N16 C17 SING N N 40 R72 C22 C18 SING N N 41 R72 N27 C26 DOUB Y N 42 R72 C18 C17 SING N N 43 R72 C18 O38 SING N N 44 R72 N25 C26 SING Y N 45 R72 C11 H1 SING N N 46 R72 C17 H2 SING N N 47 R72 C17 H3 SING N N 48 R72 C10 H4 SING N N 49 R72 C19 H5 SING N N 50 R72 C19 H6 SING N N 51 R72 C22 H7 SING N N 52 R72 C22 H8 SING N N 53 R72 C20 H9 SING N N 54 R72 C20 H10 SING N N 55 R72 C26 H11 SING N N 56 R72 C01 H12 SING N N 57 R72 C01 H13 SING N N 58 R72 C01 H14 SING N N 59 R72 C03 H15 SING N N 60 R72 C03 H16 SING N N 61 R72 C03 H17 SING N N 62 R72 C04 H18 SING N N 63 R72 C04 H19 SING N N 64 R72 C05 H20 SING N N 65 R72 C05 H21 SING N N 66 R72 C07 H22 SING N N 67 R72 C07 H23 SING N N 68 R72 C09 H24 SING N N 69 R72 C21 H25 SING N N 70 R72 C21 H26 SING N N 71 R72 C30 H27 SING N N 72 R72 C30 H28 SING N N 73 R72 C32 H29 SING N N 74 R72 C33 H30 SING N N 75 R72 C34 H31 SING N N 76 R72 C35 H32 SING N N 77 R72 C36 H33 SING N N 78 R72 C37 H34 SING N N 79 R72 C40 H35 SING N N 80 R72 C40 H36 SING N N 81 R72 C41 H37 SING N N 82 R72 C41 H38 SING N N 83 R72 N16 H40 SING N N 84 R72 N29 H41 SING N N 85 R72 O13 H42 SING N N 86 R72 O38 H43 SING N N 87 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R72 InChI InChI 1.03 "InChI=1S/C32H42N6O3/c1-31(2)12-15-37(16-13-31)20-25-9-10-26(27(39)17-25)30(40)34-21-32(41)11-6-14-38(22-32)29-18-28(35-23-36-29)33-19-24-7-4-3-5-8-24/h3-5,7-10,17-18,23,39,41H,6,11-16,19-22H2,1-2H3,(H,34,40)(H,33,35,36)/t32-/m1/s1" R72 InChIKey InChI 1.03 PWYRDVXYAOGDNK-JGCGQSQUSA-N R72 SMILES_CANONICAL CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(c(O)c2)C(=O)NC[C@]3(O)CCCN(C3)c4cc(NCc5ccccc5)ncn4" R72 SMILES CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(c(O)c2)C(=O)NC[C]3(O)CCCN(C3)c4cc(NCc5ccccc5)ncn4" R72 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)C(=O)NC[C@@]3(CCCN(C3)c4cc(ncn4)NCc5ccccc5)O)C" R72 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(c(c2)O)C(=O)NCC3(CCCN(C3)c4cc(ncn4)NCc5ccccc5)O)C" # _pdbx_chem_comp_identifier.comp_id R72 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-oxidanyl-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R72 "Create component" 2020-09-10 PDBE R72 "Initial release" 2020-10-28 RCSB ##