data_R73 # _chem_comp.id R73 _chem_comp.name "~{N}-[2,3-dimethyl-6-(1~{H}-pyrazol-5-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H15 F3 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R73 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R73 C5 C1 C 0 1 Y N N N N N -5.294 -10.060 -21.411 4.035 0.938 0.091 C5 R73 1 R73 C6 C2 C 0 1 Y N N N N N -5.227 -9.159 -22.477 4.567 2.153 -0.310 C6 R73 2 R73 C7 C3 C 0 1 Y N N N N N -5.811 -7.904 -22.354 3.719 3.142 -0.785 C7 R73 3 R73 C8 C4 C 0 1 Y N N N N N -6.451 -7.561 -21.174 2.360 2.876 -0.844 C8 R73 4 R73 C15 C5 C 0 1 Y N N N N N -8.973 -8.009 -16.637 -2.265 0.941 0.134 C15 R73 5 R73 C17 C6 C 0 1 Y N N N N N -10.210 -9.282 -15.132 -4.124 -0.613 0.086 C17 R73 6 R73 C20 C7 C 0 1 Y N N N N N -8.625 -11.568 -17.410 -0.921 -2.554 -0.284 C20 R73 7 R73 C21 C8 C 0 1 Y N N N N N -9.407 -12.633 -17.569 -1.007 -3.780 0.313 C21 R73 8 R73 C22 C9 C 0 1 Y N N N N N -8.698 -13.566 -18.202 0.084 -4.539 -0.111 C22 R73 9 R73 C26 C10 C 0 1 Y N N N N N -11.064 -7.772 -13.894 -5.836 0.705 0.322 C26 R73 10 R73 F1 F1 F 0 1 N N N N N N -5.681 -12.258 -21.328 4.214 -1.303 0.854 F1 R73 11 R73 C2 C11 C 0 1 N N N N N N -4.725 -11.349 -21.494 4.951 -0.138 0.615 C2 R73 12 R73 F3 F2 F 0 1 N N N N N N -3.831 -11.497 -20.557 5.948 -0.402 -0.330 F3 R73 13 R73 F4 F3 F 0 1 N N N N N N -4.140 -11.560 -22.675 5.542 0.293 1.808 F4 R73 14 R73 N10 N1 N 0 1 Y N N N N N -5.926 -9.691 -20.280 2.741 0.712 0.025 N10 R73 15 R73 C9 C12 C 0 1 Y N N N N N -6.485 -8.474 -20.127 1.896 1.631 -0.424 C9 R73 16 R73 C11 C13 C 0 1 N N N N N N -7.149 -8.153 -18.939 0.446 1.332 -0.481 C11 R73 17 R73 O12 O1 O 0 1 N N N N N N -7.195 -6.998 -18.518 -0.332 2.170 -0.891 O12 R73 18 R73 N13 N2 N 0 1 N N N N N N -7.742 -9.228 -18.383 -0.009 0.129 -0.076 N13 R73 19 R73 C14 C14 C 0 1 Y N N N N N -8.530 -9.171 -17.290 -1.384 -0.114 -0.020 C14 R73 20 R73 C16 C15 C 0 1 Y N N N N N -9.788 -8.094 -15.581 -3.631 0.700 0.191 C16 R73 21 R73 N28 N3 N 0 1 Y N N N N N -10.324 -7.154 -14.801 -4.739 1.511 0.339 N28 R73 22 R73 C29 C16 C 0 1 N N N N N N -10.138 -5.692 -14.908 -4.734 2.968 0.487 C29 R73 23 R73 C27 C17 C 0 1 N N N N N N -11.865 -7.096 -12.787 -7.260 1.183 0.455 C27 R73 24 R73 N25 N4 N 0 1 Y N N N N N -11.001 -9.076 -14.081 -5.478 -0.536 0.175 N25 R73 25 R73 C18 C18 C 0 1 Y N N N N N -9.835 -10.421 -15.718 -3.233 -1.677 -0.064 C18 R73 26 R73 C19 C19 C 0 1 Y N N N N N -8.985 -10.413 -16.824 -1.868 -1.430 -0.120 C19 R73 27 R73 N24 N5 N 0 1 Y N N N N N -7.439 -11.819 -17.949 0.203 -2.556 -1.056 N24 R73 28 R73 N23 N6 N 0 1 Y N N N N N -7.487 -13.071 -18.441 0.804 -3.815 -0.929 N23 R73 29 R73 H1 H1 H 0 1 N N N N N N -4.724 -9.436 -23.392 5.631 2.329 -0.251 H1 R73 30 R73 H2 H2 H 0 1 N N N N N N -5.766 -7.201 -23.173 4.109 4.097 -1.103 H2 R73 31 R73 H3 H3 H 0 1 N N N N N N -6.919 -6.593 -21.069 1.671 3.623 -1.209 H3 R73 32 R73 H4 H4 H 0 1 N N N N N N -8.653 -7.040 -16.991 -1.891 1.950 0.215 H4 R73 33 R73 H5 H5 H 0 1 N N N N N N -10.433 -12.724 -17.243 -1.781 -4.103 0.994 H5 R73 34 R73 H6 H6 H 0 1 N N N N N N -9.046 -14.552 -18.474 0.298 -5.555 0.187 H6 R73 35 R73 H7 H7 H 0 1 N N N N N N -7.589 -10.121 -18.806 0.617 -0.567 0.176 H7 R73 36 R73 H8 H8 H 0 1 N N N N N N -10.714 -5.190 -14.117 -4.794 3.434 -0.497 H8 R73 37 R73 H9 H9 H 0 1 N N N N N N -9.071 -5.449 -14.796 -5.591 3.275 1.086 H9 R73 38 R73 H10 H10 H 0 1 N N N N N N -10.490 -5.349 -15.892 -3.815 3.280 0.981 H10 R73 39 R73 H11 H11 H 0 1 N N N N N N -12.372 -7.861 -12.181 -7.663 1.401 -0.534 H11 R73 40 R73 H12 H12 H 0 1 N N N N N N -11.186 -6.513 -12.147 -7.860 0.407 0.929 H12 R73 41 R73 H13 H13 H 0 1 N N N N N N -12.614 -6.426 -13.234 -7.285 2.085 1.065 H13 R73 42 R73 H14 H14 H 0 1 N N N N N N -10.195 -11.363 -15.330 -3.604 -2.689 -0.134 H14 R73 43 R73 H15 H15 H 0 1 N N N N N N -6.657 -11.196 -17.983 0.526 -1.820 -1.598 H15 R73 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R73 F4 C2 SING N N 1 R73 C6 C7 DOUB Y N 2 R73 C6 C5 SING Y N 3 R73 C7 C8 SING Y N 4 R73 C2 C5 SING N N 5 R73 C2 F1 SING N N 6 R73 C2 F3 SING N N 7 R73 C5 N10 DOUB Y N 8 R73 C8 C9 DOUB Y N 9 R73 N10 C9 SING Y N 10 R73 C9 C11 SING N N 11 R73 C11 O12 DOUB N N 12 R73 C11 N13 SING N N 13 R73 N23 C22 DOUB Y N 14 R73 N23 N24 SING Y N 15 R73 N13 C14 SING N N 16 R73 C22 C21 SING Y N 17 R73 N24 C20 SING Y N 18 R73 C21 C20 DOUB Y N 19 R73 C20 C19 SING N N 20 R73 C14 C19 DOUB Y N 21 R73 C14 C15 SING Y N 22 R73 C19 C18 SING Y N 23 R73 C15 C16 DOUB Y N 24 R73 C18 C17 DOUB Y N 25 R73 C16 C17 SING Y N 26 R73 C16 N28 SING Y N 27 R73 C17 N25 SING Y N 28 R73 C29 N28 SING N N 29 R73 N28 C26 SING Y N 30 R73 N25 C26 DOUB Y N 31 R73 C26 C27 SING N N 32 R73 C6 H1 SING N N 33 R73 C7 H2 SING N N 34 R73 C8 H3 SING N N 35 R73 C15 H4 SING N N 36 R73 C21 H5 SING N N 37 R73 C22 H6 SING N N 38 R73 N13 H7 SING N N 39 R73 C29 H8 SING N N 40 R73 C29 H9 SING N N 41 R73 C29 H10 SING N N 42 R73 C27 H11 SING N N 43 R73 C27 H12 SING N N 44 R73 C27 H13 SING N N 45 R73 C18 H14 SING N N 46 R73 N24 H15 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R73 InChI InChI 1.06 "InChI=1S/C19H15F3N6O/c1-10-24-15-8-11(12-6-7-23-27-12)14(9-16(15)28(10)2)26-18(29)13-4-3-5-17(25-13)19(20,21)22/h3-9H,1-2H3,(H,23,27)(H,26,29)" R73 InChIKey InChI 1.06 XYHNIXWLZJJZRG-UHFFFAOYSA-N R73 SMILES_CANONICAL CACTVS 3.385 "Cn1c(C)nc2cc(c3[nH]ncc3)c(NC(=O)c4cccc(n4)C(F)(F)F)cc12" R73 SMILES CACTVS 3.385 "Cn1c(C)nc2cc(c3[nH]ncc3)c(NC(=O)c4cccc(n4)C(F)(F)F)cc12" R73 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)c4ccn[nH]4" R73 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)c4ccn[nH]4" # _pdbx_chem_comp_identifier.comp_id R73 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2,3-dimethyl-6-(1~{H}-pyrazol-5-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R73 "Create component" 2022-11-23 PDBE R73 "Modify formula" 2023-05-15 PDBE R73 "Initial release" 2024-01-31 RCSB #