data_R74 # _chem_comp.id R74 _chem_comp.name "N~2~-[(2H-1,3-benzodioxol-5-yl)acetyl]-N-[(pyridin-4-yl)methyl]-L-cysteinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R74 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VPM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R74 OB O1 O 0 1 N N N N N N -2.327 -9.780 -31.564 -2.351 -1.832 -1.388 OB R74 1 R74 CAA C1 C 0 1 Y N N N N N -5.161 -3.512 -25.141 6.028 -0.449 0.929 CAA R74 2 R74 CAB C2 C 0 1 Y N N N N N -5.083 -4.798 -24.927 5.263 -1.548 1.284 CAB R74 3 R74 CAC C3 C 0 1 Y N N N N N -5.233 -5.695 -25.970 4.099 -1.832 0.595 CAC R74 4 R74 CAD C4 C 0 1 Y N N N N N -5.473 -5.244 -27.259 3.695 -1.021 -0.449 CAD R74 5 R74 CAE C5 C 0 1 Y N N N N N -5.545 -3.860 -27.447 4.453 0.077 -0.809 CAE R74 6 R74 CAF C6 C 0 1 Y N N N N N -5.391 -3.038 -26.381 5.625 0.364 -0.127 CAF R74 7 R74 CAH C7 C 0 1 N N N N N N -5.470 -1.342 -24.916 7.295 1.387 0.945 CAH R74 8 R74 CAJ C8 C 0 1 N N N N N N -5.640 -6.193 -28.284 2.425 -1.336 -1.198 CAJ R74 9 R74 CAK C9 C 0 1 N N N N N N -4.294 -6.780 -28.702 1.266 -0.635 -0.537 CAK R74 10 R74 CAS C10 C 0 1 N N N N N N -4.770 -9.463 -32.921 -4.794 -1.106 -0.509 CAS R74 11 R74 CAT C11 C 0 1 Y N N N N N -5.052 -10.839 -32.899 -5.953 -0.405 0.151 CAT R74 12 R74 CAU C12 C 0 1 Y N N N N N -4.285 -11.734 -33.648 -6.342 -0.737 1.440 CAU R74 13 R74 CAV C13 C 0 1 Y N N N N N -4.537 -13.109 -33.646 -7.410 -0.073 2.013 CAV R74 14 R74 CAX C14 C 0 1 Y N N N N N -6.362 -12.709 -32.123 -7.710 1.211 0.124 CAX R74 15 R74 CAY C15 C 0 1 Y N N N N N -6.103 -11.338 -32.134 -6.652 0.591 -0.513 CAY R74 16 R74 CBB C16 C 0 1 N N N N N N -2.956 -10.013 -28.650 -1.206 1.340 -0.928 CBB R74 17 R74 CBC C17 C 0 1 N N R N N N -3.112 -8.760 -29.518 -1.105 -0.091 -0.396 CBC R74 18 R74 CBD C18 C 0 1 N N N N N N -3.267 -9.230 -30.983 -2.380 -0.832 -0.701 CBD R74 19 R74 NAQ N1 N 0 1 N N N N N N -4.474 -9.025 -31.544 -3.554 -0.385 -0.212 NAQ R74 20 R74 NAW N2 N 0 1 Y N N N N N -5.586 -13.595 -32.872 -8.056 0.866 1.349 NAW R74 21 R74 NBE N3 N 0 1 N N N N N N -4.332 -8.063 -29.103 0.022 -0.772 -1.038 NBE R74 22 R74 OAG O2 O 0 1 N N N N N N -5.436 -1.676 -26.329 6.538 1.367 -0.280 OAG R74 23 R74 OAI O3 O 0 1 N N N N N N -5.034 -2.533 -24.212 7.196 0.043 1.437 OAI R74 24 R74 OAM O4 O 0 1 N N N N N N -3.275 -6.075 -28.672 1.453 0.052 0.444 OAM R74 25 R74 SAZ S1 S 0 1 N N N N N N -2.732 -9.629 -26.865 0.329 2.233 -0.560 SAZ R74 26 R74 H1 H1 H 0 1 N N N N N N -4.900 -5.164 -23.928 5.576 -2.183 2.100 H1 R74 27 R74 H2 H2 H 0 1 N N N N N N -5.163 -6.756 -25.778 3.504 -2.689 0.873 H2 R74 28 R74 H3 H3 H 0 1 N N N N N N -5.721 -3.451 -28.431 4.136 0.708 -1.626 H3 R74 29 R74 H4 H4 H 0 1 N N N N N N -4.790 -0.503 -24.705 8.335 1.651 0.756 H4 R74 30 R74 H5 H5 H 0 1 N N N N N N -6.492 -1.071 -24.612 6.846 2.087 1.651 H5 R74 31 R74 H6 H6 H 0 1 N N N N N N -6.107 -5.707 -29.153 2.517 -0.994 -2.229 H6 R74 32 R74 H7 H7 H 0 1 N N N N N N -6.291 -7.003 -27.923 2.254 -2.412 -1.186 H7 R74 33 R74 H8 H8 H 0 1 N N N N N N -3.900 -9.273 -33.566 -4.722 -2.125 -0.130 H8 R74 34 R74 H9 H9 H 0 1 N N N N N N -5.640 -8.912 -33.307 -4.951 -1.130 -1.587 H9 R74 35 R74 H10 H10 H 0 1 N N N N N N -3.472 -11.352 -34.247 -5.818 -1.505 1.989 H10 R74 36 R74 H11 H11 H 0 1 N N N N N N -3.929 -13.781 -34.234 -7.719 -0.325 3.017 H11 R74 37 R74 H12 H12 H 0 1 N N N N N N -7.176 -13.091 -31.525 -8.259 1.988 -0.386 H12 R74 38 R74 H13 H13 H 0 1 N N N N N N -6.716 -10.666 -31.551 -6.374 0.878 -1.516 H13 R74 39 R74 H14 H14 H 0 1 N N N N N N -3.857 -10.633 -28.765 -1.363 1.316 -2.007 H14 R74 40 R74 H15 H15 H 0 1 N N N N N N -2.078 -10.575 -29.000 -2.045 1.847 -0.451 H15 R74 41 R74 H16 H16 H 0 1 N N N N N N -2.228 -8.113 -29.419 -0.948 -0.067 0.683 H16 R74 42 R74 H17 H17 H 0 1 N N N N N N -5.187 -8.565 -31.014 -3.577 0.414 0.337 H17 R74 43 R74 H18 H18 H 0 1 N N N N N N -5.206 -8.549 -29.118 -0.127 -1.322 -1.823 H18 R74 44 R74 H19 H19 H 0 1 N N N N N N -2.624 -10.815 -26.345 0.101 3.453 -1.077 H19 R74 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R74 CAU CAV DOUB Y N 1 R74 CAU CAT SING Y N 2 R74 CAV NAW SING Y N 3 R74 CAS CAT SING N N 4 R74 CAS NAQ SING N N 5 R74 CAT CAY DOUB Y N 6 R74 NAW CAX DOUB Y N 7 R74 CAY CAX SING Y N 8 R74 OB CBD DOUB N N 9 R74 NAQ CBD SING N N 10 R74 CBD CBC SING N N 11 R74 CBC NBE SING N N 12 R74 CBC CBB SING N N 13 R74 NBE CAK SING N N 14 R74 CAK OAM DOUB N N 15 R74 CAK CAJ SING N N 16 R74 CBB SAZ SING N N 17 R74 CAJ CAD SING N N 18 R74 CAE CAD DOUB Y N 19 R74 CAE CAF SING Y N 20 R74 CAD CAC SING Y N 21 R74 CAF OAG SING N N 22 R74 CAF CAA DOUB Y N 23 R74 OAG CAH SING N N 24 R74 CAC CAB DOUB Y N 25 R74 CAA CAB SING Y N 26 R74 CAA OAI SING N N 27 R74 CAH OAI SING N N 28 R74 CAB H1 SING N N 29 R74 CAC H2 SING N N 30 R74 CAE H3 SING N N 31 R74 CAH H4 SING N N 32 R74 CAH H5 SING N N 33 R74 CAJ H6 SING N N 34 R74 CAJ H7 SING N N 35 R74 CAS H8 SING N N 36 R74 CAS H9 SING N N 37 R74 CAU H10 SING N N 38 R74 CAV H11 SING N N 39 R74 CAX H12 SING N N 40 R74 CAY H13 SING N N 41 R74 CBB H14 SING N N 42 R74 CBB H15 SING N N 43 R74 CBC H16 SING N N 44 R74 NAQ H17 SING N N 45 R74 NBE H18 SING N N 46 R74 SAZ H19 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R74 SMILES ACDLabs 12.01 "O=C(C(CS)NC(Cc2ccc1OCOc1c2)=O)NCc3ccncc3" R74 InChI InChI 1.03 "InChI=1S/C18H19N3O4S/c22-17(8-13-1-2-15-16(7-13)25-11-24-15)21-14(10-26)18(23)20-9-12-3-5-19-6-4-12/h1-7,14,26H,8-11H2,(H,20,23)(H,21,22)/t14-/m0/s1" R74 InChIKey InChI 1.03 PDIUERQHFJXFMT-AWEZNQCLSA-N R74 SMILES_CANONICAL CACTVS 3.385 "SC[C@H](NC(=O)Cc1ccc2OCOc2c1)C(=O)NCc3ccncc3" R74 SMILES CACTVS 3.385 "SC[CH](NC(=O)Cc1ccc2OCOc2c1)C(=O)NCc3ccncc3" R74 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CC(=O)N[C@@H](CS)C(=O)NCc3ccncc3)OCO2" R74 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CC(=O)NC(CS)C(=O)NCc3ccncc3)OCO2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R74 "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(2H-1,3-benzodioxol-5-yl)acetyl]-N-[(pyridin-4-yl)methyl]-L-cysteinamide" R74 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[2-(1,3-benzodioxol-5-yl)ethanoylamino]-~{N}-(pyridin-4-ylmethyl)-3-sulfanyl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R74 "Create component" 2020-02-04 RCSB R74 "Modify formula" 2020-02-04 RCSB R74 "Initial release" 2020-08-05 RCSB R74 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R74 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom SAZ _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #