data_R78
#
_chem_comp.id R78
_chem_comp.name "4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H39 N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 521.654
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R78
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2RKU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R78 N1 N1 N 0 1 Y N N -42.799 11.946 18.089 1.137 -0.766 0.437 N1 R78 1
R78 N3 N3 N 0 1 N N N -44.066 13.857 14.715 5.137 -0.304 -0.236 N3 R78 2
R78 C4 C4 C 0 1 Y N N -41.864 12.424 17.247 1.908 -1.838 0.569 C4 R78 3
R78 C5 C5 C 0 1 N N R -43.096 14.370 13.723 5.948 -1.142 0.652 C5 R78 4
R78 C6 C6 C 0 1 N N N -41.676 14.291 14.116 5.456 -2.566 0.618 C6 R78 5
R78 C7 C7 C 0 1 Y N N -46.323 11.511 18.720 -0.571 1.332 0.083 C7 R78 6
R78 C8 C8 C 0 1 N N N -45.535 13.959 14.560 5.530 1.108 -0.131 C8 R78 7
R78 C10 C10 C 0 1 N N N -42.855 11.855 12.869 7.491 -1.464 -1.286 C10 R78 8
R78 C13 C13 C 0 1 N N N -47.345 14.939 13.303 6.743 2.893 -1.227 C13 R78 9
R78 C15 C15 C 0 1 N N N -46.339 12.777 14.034 4.474 2.013 -0.799 C15 R78 10
R78 C17 C17 C 0 1 Y N N -48.269 10.524 19.709 -2.722 2.181 0.742 C17 R78 11
R78 C20 C20 C 0 1 Y N N -47.118 12.296 17.889 -1.163 0.151 -0.351 C20 R78 12
R78 C21 C21 C 0 1 N N N -50.558 11.055 19.015 -4.775 0.809 0.424 C21 R78 13
R78 C22 C22 C 0 1 N N N -52.779 10.979 18.112 -6.795 -0.520 0.120 C22 R78 14
R78 C24 C24 C 0 1 N N N -54.958 12.016 17.568 -8.995 -0.154 -1.003 C24 R78 15
R78 C28 C28 C 0 1 N N N -54.593 9.741 16.807 -8.637 -2.201 0.245 C28 R78 16
R78 O2 O2 O 0 1 N N N -50.980 10.651 20.097 -5.462 1.691 0.900 O2 R78 17
R78 N6 N6 N 0 1 N N N -51.346 11.234 17.972 -5.346 -0.337 0.003 N6 R78 18
R78 C29 C29 C 0 1 N N N -53.094 9.863 17.120 -7.119 -2.015 0.184 C29 R78 19
R78 N7 N7 N 0 1 N N N -55.215 11.044 16.488 -9.253 -1.599 -0.945 N7 R78 20
R78 C30 C30 C 0 1 N N N -56.679 10.890 16.405 -10.694 -1.879 -0.990 C30 R78 21
R78 C23 C23 C 0 1 N N N -53.454 12.260 17.662 -7.488 0.093 -1.100 C23 R78 22
R78 C18 C18 C 0 1 Y N N -49.075 11.281 18.871 -3.316 0.992 0.306 C18 R78 23
R78 C16 C16 C 0 1 Y N N -46.890 10.625 19.633 -1.357 2.349 0.630 C16 R78 24
R78 O3 O3 O 0 1 N N N -46.052 9.869 20.433 -0.776 3.503 1.054 O3 R78 25
R78 C31 C31 C 0 1 N N N -46.485 8.779 21.267 -1.640 4.500 1.604 C31 R78 26
R78 C19 C19 C 0 1 Y N N -48.523 12.172 17.939 -2.525 -0.021 -0.241 C19 R78 27
R78 N5 N5 N 0 1 N N N -44.955 11.536 18.739 0.808 1.500 -0.025 N5 R78 28
R78 C1 C1 C 0 1 Y N N -44.115 12.047 17.824 1.652 0.407 0.101 C1 R78 29
R78 N2 N2 N 0 1 Y N N -44.537 12.678 16.725 2.949 0.567 -0.119 N2 R78 30
R78 C2 C2 C 0 1 Y N N -43.626 13.212 15.872 3.783 -0.460 -0.006 C2 R78 31
R78 C14 C14 C 0 1 N N N -47.560 13.439 13.415 5.246 3.148 -1.496 C14 R78 32
R78 C12 C12 C 0 1 N N N -45.918 15.195 13.766 6.824 1.373 -0.940 C12 R78 33
R78 C9 C9 C 0 1 N N N -43.150 13.344 12.547 7.408 -1.099 0.197 C9 R78 34
R78 O1 O1 O 0 1 N N N -40.835 14.806 13.336 6.240 -3.487 0.711 O1 R78 35
R78 N4 N4 N 0 1 N N N -41.299 13.661 15.235 4.132 -2.808 0.482 N4 R78 36
R78 C11 C11 C 0 1 N N N -39.881 13.523 15.624 3.615 -4.178 0.474 C11 R78 37
R78 C3 C3 C 0 1 Y N N -42.267 13.088 16.113 3.267 -1.712 0.350 C3 R78 38
R78 H4 H4 H 0 1 N N N -40.814 12.288 17.459 1.482 -2.792 0.844 H4 R78 39
R78 H5 H5 H 0 1 N N N -43.366 15.421 13.540 5.878 -0.761 1.671 H5 R78 40
R78 H8 H8 H 0 1 N N N -45.829 14.002 15.619 5.666 1.388 0.913 H8 R78 41
R78 H10 H10 H 0 1 N N N -42.785 11.283 11.932 7.245 -2.518 -1.415 H10 R78 42
R78 H10A H10A H 0 0 N N N -41.904 11.780 13.416 6.785 -0.855 -1.850 H10A R78 43
R78 H10B H10B H 0 0 N N N -43.667 11.446 13.488 8.502 -1.280 -1.650 H10B R78 44
R78 H13 H13 H 0 1 N N N -47.481 15.274 12.264 7.337 3.148 -2.104 H13 R78 45
R78 H13A H13A H 0 0 N N N -48.071 15.495 13.915 7.077 3.463 -0.359 H13A R78 46
R78 H15 H15 H 0 1 N N N -45.771 12.198 13.291 3.905 1.443 -1.534 H15 R78 47
R78 H15A H15A H 0 0 N N N -46.596 12.049 14.818 3.804 2.425 -0.045 H15A R78 48
R78 H17 H17 H 0 1 N N N -48.720 9.852 20.425 -3.331 2.966 1.165 H17 R78 49
R78 H20 H20 H 0 1 N N N -46.661 12.998 17.208 -0.552 -0.633 -0.774 H20 R78 50
R78 H22 H22 H 0 1 N N N -53.099 10.699 19.127 -7.152 -0.030 1.026 H22 R78 51
R78 H24 H24 H 0 1 N N N -55.474 12.962 17.346 -9.490 0.268 -1.877 H24 R78 52
R78 H24A H24A H 0 0 N N N -55.333 11.620 18.524 -9.383 0.320 -0.102 H24A R78 53
R78 H28 H28 H 0 1 N N N -54.714 9.076 15.939 -8.871 -3.265 0.276 H28 R78 54
R78 H28A H28A H 0 0 N N N -55.091 9.343 17.703 -9.026 -1.717 1.140 H28A R78 55
R78 HN6 HN6 H 0 1 N N N -50.968 11.540 17.098 -4.798 -1.041 -0.377 HN6 R78 56
R78 H29 H29 H 0 1 N N N -52.562 10.075 16.181 -6.727 -2.511 -0.703 H29 R78 57
R78 H29A H29A H 0 0 N N N -52.774 8.915 17.577 -6.663 -2.448 1.075 H29A R78 58
R78 H30 H30 H 0 1 N N N -57.102 10.852 17.420 -11.111 -1.486 -1.917 H30 R78 59
R78 H30A H30A H 0 0 N N N -57.107 11.745 15.861 -10.857 -2.956 -0.945 H30A R78 60
R78 H30B H30B H 0 0 N N N -56.920 9.958 15.872 -11.183 -1.402 -0.140 H30B R78 61
R78 H23 H23 H 0 1 N N N -53.253 13.060 18.389 -7.296 1.165 -1.128 H23 R78 62
R78 H23A H23A H 0 0 N N N -53.063 12.564 16.680 -7.101 -0.370 -2.009 H23A R78 63
R78 H31 H31 H 0 1 N N N -46.595 7.871 20.656 -2.374 4.799 0.855 H31 R78 64
R78 H31A H31A H 0 0 N N N -45.739 8.602 22.055 -2.155 4.095 2.475 H31A R78 65
R78 H31B H31B H 0 0 N N N -47.452 9.031 21.727 -1.051 5.368 1.901 H31B R78 66
R78 H19 H19 H 0 1 N N N -49.155 12.747 17.278 -2.982 -0.939 -0.579 H19 R78 67
R78 HN5 HN5 H 0 1 N N N -44.524 11.119 19.539 1.179 2.382 -0.187 HN5 R78 68
R78 H14 H14 H 0 1 N N N -48.437 13.245 14.050 4.950 4.111 -1.079 H14 R78 69
R78 H14A H14A H 0 0 N N N -47.722 13.024 12.409 5.051 3.128 -2.568 H14A R78 70
R78 H12 H12 H 0 1 N N N -45.863 16.098 14.392 7.706 1.138 -0.345 H12 R78 71
R78 H12A H12A H 0 0 N N N -45.236 15.368 12.920 6.822 0.804 -1.870 H12A R78 72
R78 H9 H9 H 0 1 N N N -44.170 13.384 12.138 7.806 -0.095 0.347 H9 R78 73
R78 H9A H9A H 0 1 N N N -42.340 13.651 11.869 7.991 -1.812 0.780 H9A R78 74
R78 H11 H11 H 0 1 N N N -39.254 13.489 14.721 4.443 -4.879 0.589 H11 R78 75
R78 H11A H11A H 0 0 N N N -39.585 14.383 16.243 2.914 -4.307 1.298 H11A R78 76
R78 H11B H11B H 0 0 N N N -39.747 12.594 16.198 3.106 -4.369 -0.471 H11B R78 77
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R78 N1 C4 DOUB Y N 1
R78 N1 C1 SING Y N 2
R78 N3 C5 SING N N 3
R78 N3 C8 SING N N 4
R78 N3 C2 SING N N 5
R78 C4 C3 SING Y N 6
R78 C5 C6 SING N N 7
R78 C5 C9 SING N N 8
R78 C6 O1 DOUB N N 9
R78 C6 N4 SING N N 10
R78 C7 C20 DOUB Y N 11
R78 C7 C16 SING Y N 12
R78 C7 N5 SING N N 13
R78 C8 C15 SING N N 14
R78 C8 C12 SING N N 15
R78 C10 C9 SING N N 16
R78 C13 C14 SING N N 17
R78 C13 C12 SING N N 18
R78 C15 C14 SING N N 19
R78 C17 C18 SING Y N 20
R78 C17 C16 DOUB Y N 21
R78 C20 C19 SING Y N 22
R78 C21 O2 DOUB N N 23
R78 C21 N6 SING N N 24
R78 C21 C18 SING N N 25
R78 C22 N6 SING N N 26
R78 C22 C29 SING N N 27
R78 C22 C23 SING N N 28
R78 C24 N7 SING N N 29
R78 C24 C23 SING N N 30
R78 C28 C29 SING N N 31
R78 C28 N7 SING N N 32
R78 N7 C30 SING N N 33
R78 C18 C19 DOUB Y N 34
R78 C16 O3 SING N N 35
R78 O3 C31 SING N N 36
R78 N5 C1 SING N N 37
R78 C1 N2 DOUB Y N 38
R78 N2 C2 SING Y N 39
R78 C2 C3 DOUB Y N 40
R78 N4 C11 SING N N 41
R78 N4 C3 SING N N 42
R78 C4 H4 SING N N 43
R78 C5 H5 SING N N 44
R78 C8 H8 SING N N 45
R78 C10 H10 SING N N 46
R78 C10 H10A SING N N 47
R78 C10 H10B SING N N 48
R78 C13 H13 SING N N 49
R78 C13 H13A SING N N 50
R78 C15 H15 SING N N 51
R78 C15 H15A SING N N 52
R78 C17 H17 SING N N 53
R78 C20 H20 SING N N 54
R78 C22 H22 SING N N 55
R78 C24 H24 SING N N 56
R78 C24 H24A SING N N 57
R78 C28 H28 SING N N 58
R78 C28 H28A SING N N 59
R78 N6 HN6 SING N N 60
R78 C29 H29 SING N N 61
R78 C29 H29A SING N N 62
R78 C30 H30 SING N N 63
R78 C30 H30A SING N N 64
R78 C30 H30B SING N N 65
R78 C23 H23 SING N N 66
R78 C23 H23A SING N N 67
R78 C31 H31 SING N N 68
R78 C31 H31A SING N N 69
R78 C31 H31B SING N N 70
R78 C19 H19 SING N N 71
R78 N5 HN5 SING N N 72
R78 C14 H14 SING N N 73
R78 C14 H14A SING N N 74
R78 C12 H12 SING N N 75
R78 C12 H12A SING N N 76
R78 C9 H9 SING N N 77
R78 C9 H9A SING N N 78
R78 C11 H11 SING N N 79
R78 C11 H11A SING N N 80
R78 C11 H11B SING N N 81
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R78 SMILES ACDLabs 10.04 "O=C5N(c1c(nc(nc1)Nc3ccc(C(=O)NC2CCN(C)CC2)cc3OC)N(C4CCCC4)C5CC)C"
R78 SMILES_CANONICAL CACTVS 3.341 "CC[C@H]1N(C2CCCC2)c3nc(Nc4ccc(cc4OC)C(=O)NC5CCN(C)CC5)ncc3N(C)C1=O"
R78 SMILES CACTVS 3.341 "CC[CH]1N(C2CCCC2)c3nc(Nc4ccc(cc4OC)C(=O)NC5CCN(C)CC5)ncc3N(C)C1=O"
R78 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@H]1C(=O)N(c2cnc(nc2N1C3CCCC3)Nc4ccc(cc4OC)C(=O)NC5CCN(CC5)C)C"
R78 SMILES "OpenEye OEToolkits" 1.5.0 "CCC1C(=O)N(c2cnc(nc2N1C3CCCC3)Nc4ccc(cc4OC)C(=O)NC5CCN(CC5)C)C"
R78 InChI InChI 1.03 "InChI=1S/C28H39N7O3/c1-5-22-27(37)34(3)23-17-29-28(32-25(23)35(22)20-8-6-7-9-20)31-21-11-10-18(16-24(21)38-4)26(36)30-19-12-14-33(2)15-13-19/h10-11,16-17,19-20,22H,5-9,12-15H2,1-4H3,(H,30,36)(H,29,31,32)/t22-/m1/s1"
R78 InChIKey InChI 1.03 XQVVPGYIWAGRNI-JOCHJYFZSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R78 "SYSTEMATIC NAME" ACDLabs 10.04 "4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide"
R78 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-7H-pteridin-2-yl]amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R78 "Create component" 2007-12-18 RCSB
R78 "Modify aromatic_flag" 2011-06-04 RCSB
R78 "Modify descriptor" 2011-06-04 RCSB
##