data_R7I # _chem_comp.id R7I _chem_comp.name "inosine diphosphate ribose" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 N4 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-20 _chem_comp.pdbx_modified_date 2018-11-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R7I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HOZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R7I O1B O1 O 0 1 N N N 16.176 0.420 -9.412 3.644 1.127 2.962 O1B R7I 1 R7I PB P1 P 0 1 N N N 15.330 0.696 -10.605 3.558 1.170 1.355 PB R7I 2 R7I O2B O2 O 0 1 N N N 15.692 0.189 -11.960 4.159 2.430 0.863 O2B R7I 3 R7I O5D O3 O 0 1 N N N 13.842 0.251 -10.280 4.360 -0.083 0.740 O5D R7I 4 R7I C5D C1 C 0 1 N N N 13.526 -1.117 -10.497 5.773 -0.247 0.879 C5D R7I 5 R7I C4D C2 C 0 1 N N R 12.060 -1.255 -10.195 6.208 -1.537 0.182 C4D R7I 6 R7I C3D C3 C 0 1 N N S 11.492 -2.668 -10.340 7.710 -1.784 0.425 C3D R7I 7 R7I O3D O4 O 0 1 N N N 10.632 -2.882 -9.225 7.916 -3.068 1.016 O3D R7I 8 R7I C2D C4 C 0 1 N N R 10.784 -2.581 -11.692 8.337 -1.730 -0.989 C2D R7I 9 R7I O2D O5 O 0 1 N N N 9.853 -3.627 -11.910 8.506 -3.045 -1.523 O2D R7I 10 R7I C1D C5 C 0 1 N N S 10.198 -1.178 -11.541 7.269 -0.942 -1.789 C1D R7I 11 R7I O1D O6 O 0 1 N N N 9.213 -1.202 -10.535 7.353 -1.250 -3.181 O1D R7I 12 R7I O4D O7 O 0 1 N N N 11.318 -0.418 -11.124 6.017 -1.413 -1.238 O4D R7I 13 R7I O3A O8 O 0 1 N N N 15.083 2.278 -10.735 2.016 1.097 0.897 O3A R7I 14 R7I PA P2 P 0 1 N N N 15.634 3.552 -9.927 0.824 2.175 0.806 PA R7I 15 R7I O2A O9 O 0 1 N N N 14.909 4.722 -10.523 1.332 3.421 0.189 O2A R7I 16 R7I O1A O10 O 0 1 N N N 17.149 3.549 -9.919 0.276 2.495 2.286 O1A R7I 17 R7I "O5'" O11 O 0 1 N N N 15.104 3.288 -8.435 -0.372 1.579 -0.092 "O5'" R7I 18 R7I "C5'" C6 C 0 1 N N N 13.678 3.200 -8.194 -1.530 2.336 -0.448 "C5'" R7I 19 R7I "C4'" C7 C 0 1 N N R 13.259 4.275 -7.224 -2.461 1.473 -1.301 "C4'" R7I 20 R7I "O4'" O12 O 0 1 N N N 13.927 4.066 -5.958 -2.984 0.391 -0.512 "O4'" R7I 21 R7I "C3'" C8 C 0 1 N N S 13.612 5.717 -7.592 -3.662 2.313 -1.780 "C3'" R7I 22 R7I "O3'" O13 O 0 1 N N N 12.700 6.292 -8.523 -3.704 2.357 -3.207 "O3'" R7I 23 R7I "C2'" C9 C 0 1 N N R 13.533 6.384 -6.218 -4.896 1.561 -1.224 "C2'" R7I 24 R7I "O2'" O14 O 0 1 N N N 12.205 6.656 -5.828 -5.950 1.529 -2.188 "O2'" R7I 25 R7I "C1'" C10 C 0 1 N N R 14.112 5.306 -5.309 -4.327 0.140 -0.978 "C1'" R7I 26 R7I N9 N1 N 0 1 Y N N 15.530 5.457 -5.008 -5.107 -0.557 0.047 N9 R7I 27 R7I C4 C11 C 0 1 Y N N 16.075 6.431 -4.216 -6.211 -1.336 -0.167 C4 R7I 28 R7I N3 N2 N 0 1 N N N 15.405 7.440 -3.600 -6.901 -1.704 -1.256 N3 R7I 29 R7I C2 C12 C 0 1 N N N 16.208 8.220 -2.921 -7.946 -2.478 -1.165 C2 R7I 30 R7I N1 N3 N 0 1 N N N 17.539 8.054 -2.826 -8.392 -2.953 0.025 N1 R7I 31 R7I C8 C13 C 0 1 Y N N 16.573 4.656 -5.423 -4.862 -0.553 1.388 C8 R7I 32 R7I N7 N4 N 0 1 Y N N 17.732 5.060 -4.948 -5.753 -1.278 2.001 N7 R7I 33 R7I C5 C14 C 0 1 Y N N 17.429 6.181 -4.185 -6.616 -1.790 1.092 C5 R7I 34 R7I C6 C15 C 0 1 N N N 18.285 7.037 -3.436 -7.754 -2.630 1.173 C6 R7I 35 R7I O1 O15 O 0 1 N N N 19.512 6.962 -3.307 -8.147 -3.052 2.247 O1 R7I 36 R7I H1 H1 H 0 1 N N N 16.928 -0.100 -9.670 3.267 0.327 3.354 H1 R7I 37 R7I H2 H2 H 0 1 N N N 13.729 -1.395 -11.542 6.284 0.602 0.424 H2 R7I 38 R7I H3 H3 H 0 1 N N N 14.117 -1.757 -9.825 6.030 -0.301 1.937 H3 R7I 39 R7I H4 H4 H 0 1 N N N 11.877 -0.911 -9.166 5.628 -2.378 0.562 H4 R7I 40 R7I H5 H5 H 0 1 N N N 12.306 -3.406 -10.380 8.127 -1.002 1.059 H5 R7I 41 R7I H6 H6 H 0 1 N N N 11.149 -2.923 -8.429 8.844 -3.276 1.191 H6 R7I 42 R7I H7 H7 H 0 1 N N N 11.541 -2.567 -12.490 9.286 -1.194 -0.973 H7 R7I 43 R7I H8 H8 H 0 1 N N N 10.316 -4.452 -11.990 8.812 -3.061 -2.440 H8 R7I 44 R7I H9 H9 H 0 1 N N N 9.798 -0.826 -12.503 7.381 0.130 -1.625 H9 R7I 45 R7I H10 H10 H 0 1 N N N 8.842 -0.333 -10.433 6.707 -0.783 -3.728 H10 R7I 46 R7I H11 H11 H 0 1 N N N 17.470 4.347 -10.322 -0.073 1.723 2.751 H11 R7I 47 R7I H12 H12 H 0 1 N N N 13.138 3.333 -9.143 -2.052 2.649 0.457 H12 R7I 48 R7I H13 H13 H 0 1 N N N 13.439 2.213 -7.771 -1.228 3.217 -1.015 H13 R7I 49 R7I H14 H14 H 0 1 N N N 12.171 4.212 -7.078 -1.917 1.078 -2.159 H14 R7I 50 R7I H15 H15 H 0 1 N N N 14.645 5.762 -7.967 -3.611 3.320 -1.367 H15 R7I 51 R7I H16 H16 H 0 1 N N N 12.964 7.184 -8.716 -4.440 2.873 -3.563 H16 R7I 52 R7I H17 H17 H 0 1 N N N 14.164 7.285 -6.194 -5.238 2.010 -0.292 H17 R7I 53 R7I H18 H18 H 0 1 N N N 12.204 7.068 -4.972 -6.278 2.403 -2.442 H18 R7I 54 R7I H19 H19 H 0 1 N N N 13.545 5.315 -4.366 -4.311 -0.432 -1.906 H19 R7I 55 R7I H20 H20 H 0 1 N N N 15.769 9.058 -2.399 -8.474 -2.750 -2.067 H20 R7I 56 R7I H21 H21 H 0 1 N N N 18.042 8.716 -2.270 -9.174 -3.526 0.053 H21 R7I 57 R7I H22 H22 H 0 1 N N N 16.453 3.796 -6.064 -4.051 -0.028 1.869 H22 R7I 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R7I O2B PB DOUB N N 1 R7I O2D C2D SING N N 2 R7I C2D C1D SING N N 3 R7I C2D C3D SING N N 4 R7I C1D O4D SING N N 5 R7I C1D O1D SING N N 6 R7I O4D C4D SING N N 7 R7I O3A PB SING N N 8 R7I O3A PA SING N N 9 R7I PB O5D SING N N 10 R7I PB O1B SING N N 11 R7I O2A PA DOUB N N 12 R7I C5D O5D SING N N 13 R7I C5D C4D SING N N 14 R7I C3D C4D SING N N 15 R7I C3D O3D SING N N 16 R7I PA O1A SING N N 17 R7I PA "O5'" SING N N 18 R7I "O3'" "C3'" SING N N 19 R7I "O5'" "C5'" SING N N 20 R7I "C5'" "C4'" SING N N 21 R7I "C3'" "C4'" SING N N 22 R7I "C3'" "C2'" SING N N 23 R7I "C4'" "O4'" SING N N 24 R7I "C2'" "O2'" SING N N 25 R7I "C2'" "C1'" SING N N 26 R7I "O4'" "C1'" SING N N 27 R7I C8 N9 SING Y N 28 R7I C8 N7 DOUB Y N 29 R7I "C1'" N9 SING N N 30 R7I N9 C4 SING Y N 31 R7I N7 C5 SING Y N 32 R7I C4 C5 DOUB Y N 33 R7I C4 N3 SING N N 34 R7I C5 C6 SING N N 35 R7I N3 C2 DOUB N N 36 R7I C6 O1 DOUB N N 37 R7I C6 N1 SING N N 38 R7I C2 N1 SING N N 39 R7I O1B H1 SING N N 40 R7I C5D H2 SING N N 41 R7I C5D H3 SING N N 42 R7I C4D H4 SING N N 43 R7I C3D H5 SING N N 44 R7I O3D H6 SING N N 45 R7I C2D H7 SING N N 46 R7I O2D H8 SING N N 47 R7I C1D H9 SING N N 48 R7I O1D H10 SING N N 49 R7I O1A H11 SING N N 50 R7I "C5'" H12 SING N N 51 R7I "C5'" H13 SING N N 52 R7I "C4'" H14 SING N N 53 R7I "C3'" H15 SING N N 54 R7I "O3'" H16 SING N N 55 R7I "C2'" H17 SING N N 56 R7I "O2'" H18 SING N N 57 R7I "C1'" H19 SING N N 58 R7I C2 H20 SING N N 59 R7I N1 H21 SING N N 60 R7I C8 H22 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R7I InChI InChI 1.03 "InChI=1S/C15H22N4O15P2/c20-8-5(32-14(10(8)22)19-4-18-7-12(19)16-3-17-13(7)24)1-30-35(26,27)34-36(28,29)31-2-6-9(21)11(23)15(25)33-6/h3-6,8-11,14-15,20-23,25H,1-2H2,(H,26,27)(H,28,29)(H,16,17,24)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1" R7I InChIKey InChI 1.03 GKBLKKRZILWFNP-ZQSHOCFMSA-N R7I SMILES_CANONICAL CACTVS 3.385 "O[C@H]1O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC=Nc34)[C@@H](O)[C@H]1O" R7I SMILES CACTVS 3.385 "O[CH]1O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC=Nc34)[CH](O)[CH]1O" R7I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)O)N=CNC2=O" R7I SMILES "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)N=CNC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R7I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{S})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R7I "Create component" 2018-09-20 EBI R7I "Initial release" 2018-11-28 RCSB #