data_R7O # _chem_comp.id R7O _chem_comp.name Gossypin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[3,4-bis(oxidanyl)phenyl]-8-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5,7-tris(oxidanyl)chromen-4-one; 2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-17 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.376 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R7O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C3R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R7O C1 C1 C 0 1 Y N N N N N -20.184 5.969 29.141 4.372 -1.800 0.772 C1 R7O 1 R7O C2 C2 C 0 1 Y N N N N N -21.393 6.532 29.497 4.371 -2.572 -0.381 C2 R7O 2 R7O C3 C3 C 0 1 Y N N N N N -22.580 5.867 29.186 3.564 -2.217 -1.461 C3 R7O 3 R7O C4 C4 C 0 1 Y N N N N N -22.542 4.673 28.484 2.762 -1.095 -1.385 C4 R7O 4 R7O C5 C5 C 0 1 Y N N N N N -21.320 4.122 28.111 2.763 -0.317 -0.223 C5 R7O 5 R7O C6 C6 C 0 1 N N N N N N -21.265 2.912 27.291 1.905 0.879 -0.134 C6 R7O 6 R7O O1 O1 O 0 1 N N N N N N -22.496 2.654 26.760 0.618 0.782 -0.511 O1 R7O 7 R7O O11 O2 O 0 1 N N N N N N -23.759 6.384 29.615 3.566 -2.976 -2.590 O11 R7O 8 R7O O12 O3 O 0 1 N N N N N N -21.413 7.740 30.100 5.159 -3.676 -0.458 O12 R7O 9 R7O O2 O4 O 0 1 N N N N N N -20.837 -0.885 23.963 -0.205 5.376 0.507 O2 R7O 10 R7O O3 O5 O 0 1 N N N N N N -25.366 0.485 23.744 -3.708 2.644 -1.182 O3 R7O 11 R7O O4 O6 O 0 1 N N N N N N -24.926 2.324 25.758 -2.011 0.492 -1.304 O4 R7O 12 R7O O5 O7 O 0 1 N N N N N N -24.681 4.599 25.879 -1.519 -0.803 0.574 O5 R7O 13 R7O O6 O8 O 0 1 N N N N N N -22.899 7.051 26.036 -0.348 -0.835 3.199 O6 R7O 14 R7O C C7 C 0 1 Y N N N N N -20.151 4.770 28.460 3.570 -0.681 0.857 C R7O 15 R7O O O9 O 0 1 N N N N N N -19.302 0.437 25.681 2.080 4.257 0.838 O R7O 16 R7O C10 C8 C 0 1 Y N N N N N -22.657 1.659 25.831 -0.231 1.831 -0.458 C10 R7O 17 R7O C11 C9 C 0 1 Y N N N N N -23.915 1.528 25.293 -1.555 1.694 -0.854 C11 R7O 18 R7O C12 C10 C 0 1 Y N N N N N -24.134 0.593 24.294 -2.414 2.784 -0.793 C12 R7O 19 R7O C13 C11 C 0 1 Y N N N N N -23.095 -0.211 23.856 -1.962 4.017 -0.337 C13 R7O 20 R7O C14 C12 C 0 1 Y N N N N N -21.832 -0.083 24.410 -0.647 4.171 0.062 C14 R7O 21 R7O C15 C13 C 0 1 N N S N N N -25.132 3.532 25.070 -2.551 -0.403 -0.330 C15 R7O 22 R7O C16 C14 C 0 1 N N R N N N -26.630 3.641 24.834 -3.120 -1.639 -1.031 C16 R7O 23 R7O C17 C15 C 0 1 N N S N N N -26.953 4.987 24.206 -3.642 -2.620 0.023 C17 R7O 24 R7O C18 C16 C 0 1 N N S N N N -26.375 6.117 25.042 -2.504 -2.970 0.986 C18 R7O 25 R7O C19 C17 C 0 1 N N R N N N -24.886 5.889 25.284 -1.959 -1.683 1.610 C19 R7O 26 R7O C20 C18 C 0 1 N N N N N N -24.293 6.904 26.232 -0.782 -2.020 2.528 C20 R7O 27 R7O C7 C19 C 0 1 N N N N N N -20.182 2.160 26.945 2.444 2.040 0.333 C7 R7O 28 R7O C8 C20 C 0 1 N N N N N N -20.285 1.090 25.984 1.631 3.200 0.425 C8 R7O 29 R7O C9 C21 C 0 1 Y N N N N N -21.589 0.869 25.418 0.226 3.078 0.004 C9 R7O 30 R7O O10 O10 O 0 1 N N N N N N -18.985 2.386 27.468 3.751 2.087 0.707 O10 R7O 31 R7O O7 O11 O 0 1 N N N N N N -26.562 7.358 24.374 -2.999 -3.828 2.017 O7 R7O 32 R7O O8 O12 O 0 1 N N N N N N -28.359 5.144 24.102 -4.109 -3.808 -0.619 O8 R7O 33 R7O O9 O13 O 0 1 N N N N N N -27.056 2.585 23.987 -4.190 -1.248 -1.894 O9 R7O 34 R7O H1 H1 H 0 1 N N N N N N -19.261 6.469 29.396 4.999 -2.079 1.606 H1 R7O 35 R7O H2 H2 H 0 1 N N N N N N -23.462 4.169 28.226 2.137 -0.819 -2.221 H2 R7O 36 R7O H3 H3 H 0 1 N N N N N N -23.599 7.200 30.075 2.911 -3.687 -2.587 H3 R7O 37 R7O H4 H4 H 0 1 N N N N N N -22.312 7.990 30.280 4.732 -4.487 -0.151 H4 R7O 38 R7O H5 H5 H 0 1 N N N N N N -20.029 -0.670 24.415 -0.301 5.502 1.461 H5 R7O 39 R7O H6 H6 H 0 1 N N N N N N -25.954 1.105 24.159 -4.307 2.380 -0.470 H6 R7O 40 R7O H7 H7 H 0 1 N N N N N N -22.559 7.695 26.646 0.397 -0.974 3.800 H7 R7O 41 R7O H8 H8 H 0 1 N N N N N N -19.199 4.332 28.196 3.573 -0.083 1.756 H8 R7O 42 R7O H9 H9 H 0 1 N N N N N N -23.270 -0.941 23.079 -2.639 4.856 -0.294 H9 R7O 43 R7O H10 H10 H 0 1 N N N N N N -24.610 3.527 24.102 -3.345 0.099 0.224 H10 R7O 44 R7O H11 H11 H 0 1 N N N N N N -27.144 3.575 25.804 -2.336 -2.118 -1.618 H11 R7O 45 R7O H12 H12 H 0 1 N N N N N N -26.497 5.024 23.206 -4.460 -2.158 0.577 H12 R7O 46 R7O H13 H13 H 0 1 N N N N N N -26.889 6.133 26.014 -1.708 -3.476 0.440 H13 R7O 47 R7O H14 H14 H 0 1 N N N N N N -24.358 5.948 24.321 -2.745 -1.198 2.189 H14 R7O 48 R7O H15 H15 H 0 1 N N N N N N -24.781 7.876 26.065 0.038 -2.422 1.934 H15 R7O 49 R7O H16 H16 H 0 1 N N N N N N -24.475 6.575 27.266 -1.096 -2.760 3.264 H16 R7O 50 R7O H17 H17 H 0 1 N N N N N N -18.358 1.772 27.103 4.038 2.955 1.024 H17 R7O 51 R7O H18 H18 H 0 1 N N N N N N -26.199 8.060 24.901 -3.365 -4.662 1.692 H18 R7O 52 R7O H19 H19 H 0 1 N N N N N N -28.556 5.986 23.709 -4.827 -3.659 -1.250 H19 R7O 53 R7O H20 H20 H 0 1 N N N N N N -26.848 1.751 24.391 -3.931 -0.623 -2.584 H20 R7O 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R7O O3 C12 SING N N 1 R7O C13 C12 SING Y N 2 R7O C13 C14 DOUB Y N 3 R7O O2 C14 SING N N 4 R7O O9 C16 SING N N 5 R7O O8 C17 SING N N 6 R7O C17 C16 SING N N 7 R7O C17 C18 SING N N 8 R7O C12 C11 DOUB Y N 9 R7O O7 C18 SING N N 10 R7O C14 C9 SING Y N 11 R7O C16 C15 SING N N 12 R7O C18 C19 SING N N 13 R7O C15 O4 SING N N 14 R7O C15 O5 SING N N 15 R7O C19 O5 SING N N 16 R7O C19 C20 SING N N 17 R7O C11 O4 SING N N 18 R7O C11 C10 SING Y N 19 R7O C9 C10 DOUB Y N 20 R7O C9 C8 SING N N 21 R7O O C8 DOUB N N 22 R7O C10 O1 SING N N 23 R7O C8 C7 SING N N 24 R7O O6 C20 SING N N 25 R7O O1 C6 SING N N 26 R7O C7 C6 DOUB N N 27 R7O C7 O10 SING N N 28 R7O C6 C5 SING N N 29 R7O C5 C DOUB Y N 30 R7O C5 C4 SING Y N 31 R7O C C1 SING Y N 32 R7O C4 C3 DOUB Y N 33 R7O C1 C2 DOUB Y N 34 R7O C3 C2 SING Y N 35 R7O C3 O11 SING N N 36 R7O C2 O12 SING N N 37 R7O C1 H1 SING N N 38 R7O C4 H2 SING N N 39 R7O O11 H3 SING N N 40 R7O O12 H4 SING N N 41 R7O O2 H5 SING N N 42 R7O O3 H6 SING N N 43 R7O O6 H7 SING N N 44 R7O C H8 SING N N 45 R7O C13 H9 SING N N 46 R7O C15 H10 SING N N 47 R7O C16 H11 SING N N 48 R7O C17 H12 SING N N 49 R7O C18 H13 SING N N 50 R7O C19 H14 SING N N 51 R7O C20 H15 SING N N 52 R7O C20 H16 SING N N 53 R7O O10 H17 SING N N 54 R7O O7 H18 SING N N 55 R7O O8 H19 SING N N 56 R7O O9 H20 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R7O InChI InChI 1.06 "InChI=1S/C21H20O13/c22-5-11-13(27)15(29)17(31)21(32-11)34-19-10(26)4-9(25)12-14(28)16(30)18(33-20(12)19)6-1-2-7(23)8(24)3-6/h1-4,11,13,15,17,21-27,29-31H,5H2/t11-,13-,15+,17-,21+/m1/s1" R7O InChIKey InChI 1.06 SJRXVLUZMMDCNG-KKPQBLLMSA-N R7O SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](Oc2c(O)cc(O)c3C(=O)C(=C(Oc23)c4ccc(O)c(O)c4)O)[C@H](O)[C@@H](O)[C@@H]1O" R7O SMILES CACTVS 3.385 "OC[CH]1O[CH](Oc2c(O)cc(O)c3C(=O)C(=C(Oc23)c4ccc(O)c(O)c4)O)[CH](O)[CH](O)[CH]1O" R7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=C(C(=O)c3c(cc(c(c3O2)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)O)O)O" R7O SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=C(C(=O)c3c(cc(c(c3O2)OC4C(C(C(C(O4)CO)O)O)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id R7O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3,4-bis(oxidanyl)phenyl]-8-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5,7-tris(oxidanyl)chromen-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R7O "Create component" 2022-11-24 EBI R7O "Initial release" 2024-01-10 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 R7O "2-[3,4-bis(oxidanyl)phenyl]-8-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5,7-tris(oxidanyl)chromen-4-one" PDB ? 2 R7O "2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-4-one" PUBCHEM ? #