data_R7P # _chem_comp.id R7P _chem_comp.name "2-({4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]-2-methoxyphenyl}amino)-9-methyl-5,7-dihydro-6H-pyrimido[5,4-d][1,3]benzodiazepin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-06 _chem_comp.pdbx_modified_date 2021-02-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R7P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VQM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R7P C1 C1 C 0 1 N N N 11.920 12.722 -10.637 2.753 4.163 -0.909 C1 R7P 1 R7P C3 C2 C 0 1 Y N N 11.333 10.448 -11.421 2.135 2.036 -0.044 C3 R7P 2 R7P C4 C3 C 0 1 Y N N 10.222 10.947 -12.094 3.482 1.723 -0.005 C4 R7P 3 R7P C5 C4 C 0 1 Y N N 9.389 10.103 -12.872 3.892 0.478 0.454 C5 R7P 4 R7P C6 C5 C 0 1 Y N N 9.738 8.748 -12.955 2.951 -0.452 0.874 C6 R7P 5 R7P C7 C6 C 0 1 Y N N 10.844 8.250 -12.285 1.605 -0.141 0.837 C7 R7P 6 R7P C8 C7 C 0 1 Y N N 11.670 9.082 -11.497 1.192 1.103 0.384 C8 R7P 7 R7P C12 C8 C 0 1 Y N N 14.786 5.916 -9.643 -1.541 -1.783 -0.431 C12 R7P 8 R7P C15 C9 C 0 1 N N N 14.007 2.357 -9.388 -5.034 -2.747 -0.646 C15 R7P 9 R7P C18 C10 C 0 1 Y N N 11.667 2.616 -10.259 -5.876 -0.482 -0.077 C18 R7P 10 R7P C19 C11 C 0 1 Y N N 10.567 1.766 -10.522 -7.108 0.128 0.085 C19 R7P 11 R7P C21 C12 C 0 1 N N N 8.206 1.329 -11.248 -8.516 2.130 0.595 C21 R7P 12 R7P C23 C13 C 0 1 Y N N 10.256 4.508 -10.891 -4.779 1.612 0.437 C23 R7P 13 R7P C24 C14 C 0 1 Y N N 11.513 4.030 -10.421 -4.703 0.267 0.102 C24 R7P 14 R7P C31 C15 C 0 1 N N N 6.784 13.871 -14.764 8.008 0.162 -2.118 C31 R7P 15 R7P C33 C16 C 0 1 N N R 5.782 10.204 -13.924 6.965 -1.479 1.110 C33 R7P 16 R7P C35 C17 C 0 1 N N N 4.489 9.646 -13.291 7.187 -2.908 1.609 C35 R7P 17 R7P C36 C18 C 0 1 N N N 6.978 9.979 -12.981 5.464 -1.200 1.009 C36 R7P 18 R7P O2 O1 O 0 1 N N N 12.084 11.314 -10.684 1.731 3.255 -0.493 O2 R7P 19 R7P N9 N1 N 0 1 N N N 12.822 8.662 -10.776 -0.175 1.418 0.346 N9 R7P 20 R7P C10 C19 C 0 1 Y N N 13.156 7.351 -10.425 -1.110 0.422 0.110 C10 R7P 21 R7P N11 N2 N 0 1 Y N N 14.388 7.140 -9.987 -0.687 -0.795 -0.197 N11 R7P 22 R7P C13 C20 C 0 1 Y N N 13.916 4.813 -9.731 -2.898 -1.519 -0.356 C13 R7P 23 R7P N14 N3 N 0 1 N N N 14.504 3.603 -9.344 -3.693 -2.638 -0.629 N14 R7P 24 R7P O16 O2 O 0 1 N N N 14.779 1.491 -9.000 -5.449 -3.856 -0.920 O16 R7P 25 R7P N17 N4 N 0 1 N N N 12.802 1.912 -9.793 -5.991 -1.833 -0.412 N17 R7P 26 R7P C20 C21 C 0 1 Y N N 9.349 2.273 -10.959 -7.174 1.469 0.419 C20 R7P 27 R7P C22 C22 C 0 1 Y N N 9.200 3.640 -11.146 -6.017 2.207 0.594 C22 R7P 28 R7P C25 C23 C 0 1 Y N N 12.599 5.049 -10.200 -3.311 -0.219 -0.029 C25 R7P 29 R7P N26 N5 N 0 1 Y N N 12.309 6.318 -10.518 -2.401 0.717 0.198 N26 R7P 30 R7P N27 N6 N 0 1 N N N 8.229 10.520 -13.580 5.254 0.160 0.492 N27 R7P 31 R7P C28 C24 C 0 1 N N N 8.096 11.980 -13.792 5.870 0.318 -0.833 C28 R7P 32 R7P C29 C25 C 0 1 N N S 6.925 12.334 -14.717 7.371 0.039 -0.732 C29 R7P 33 R7P N32 N7 N 0 1 N N N 5.699 11.650 -14.242 7.581 -1.321 -0.215 N32 R7P 34 R7P H1 H1 H 0 1 N N N 12.669 13.156 -9.958 3.319 3.722 -1.729 H1 R7P 35 R7P H2 H2 H 0 1 N N N 12.053 13.140 -11.646 2.296 5.095 -1.243 H2 R7P 36 R7P H3 H3 H 0 1 N N N 10.911 12.961 -10.271 3.422 4.366 -0.073 H3 R7P 37 R7P H4 H4 H 0 1 N N N 9.989 11.999 -12.022 4.215 2.446 -0.333 H4 R7P 38 R7P H5 H5 H 0 1 N N N 9.134 8.080 -13.552 3.271 -1.420 1.231 H5 R7P 39 R7P H6 H6 H 0 1 N N N 11.080 7.199 -12.367 0.874 -0.865 1.164 H6 R7P 40 R7P H7 H7 H 0 1 N N N 15.796 5.767 -9.290 -1.186 -2.772 -0.680 H7 R7P 41 R7P H8 H8 H 0 1 N N N 10.676 0.701 -10.380 -8.016 -0.441 -0.049 H8 R7P 42 R7P H9 H9 H 0 1 N N N 8.251 1.009 -12.299 -8.832 2.042 1.634 H9 R7P 43 R7P H10 H10 H 0 1 N N N 8.283 0.449 -10.593 -8.440 3.184 0.327 H10 R7P 44 R7P H11 H11 H 0 1 N N N 7.251 1.842 -11.062 -9.248 1.644 -0.050 H11 R7P 45 R7P H12 H12 H 0 1 N N N 10.120 5.567 -11.053 -3.877 2.189 0.575 H12 R7P 46 R7P H13 H13 H 0 1 N N N 7.724 14.315 -15.123 7.548 -0.558 -2.794 H13 R7P 47 R7P H14 H14 H 0 1 N N N 5.966 14.143 -15.447 7.852 1.171 -2.500 H14 R7P 48 R7P H15 H15 H 0 1 N N N 6.562 14.250 -13.755 9.077 -0.038 -2.046 H15 R7P 49 R7P H16 H16 H 0 1 N N N 5.972 9.648 -14.854 7.420 -0.775 1.808 H16 R7P 50 R7P H17 H17 H 0 1 N N N 4.616 8.574 -13.081 6.733 -3.611 0.910 H17 R7P 51 R7P H18 H18 H 0 1 N N N 4.279 10.181 -12.353 8.256 -3.106 1.681 H18 R7P 52 R7P H19 H19 H 0 1 N N N 3.650 9.786 -13.988 6.728 -3.025 2.591 H19 R7P 53 R7P H20 H20 H 0 1 N N N 6.785 10.489 -12.025 5.005 -1.920 0.332 H20 R7P 54 R7P H21 H21 H 0 1 N N N 7.100 8.900 -12.803 5.010 -1.288 1.996 H21 R7P 55 R7P H22 H22 H 0 1 N N N 13.459 9.379 -10.491 -0.466 2.333 0.485 H22 R7P 56 R7P H23 H23 H 0 1 N N N 15.433 3.678 -8.981 -3.207 -3.452 -0.835 H23 R7P 57 R7P H24 H24 H 0 1 N N N 12.691 0.919 -9.759 -6.900 -2.162 -0.487 H24 R7P 58 R7P H25 H25 H 0 1 N N N 8.256 4.033 -11.493 -6.081 3.253 0.855 H25 R7P 59 R7P H26 H26 H 0 1 N N N 9.027 12.358 -14.240 5.415 -0.386 -1.531 H26 R7P 60 R7P H27 H27 H 0 1 N N N 7.935 12.465 -12.818 5.712 1.336 -1.188 H27 R7P 61 R7P H28 H28 H 0 1 N N N 7.164 11.979 -15.730 7.830 0.759 -0.055 H28 R7P 62 R7P H29 H29 H 0 1 N N N 5.400 12.120 -13.411 7.229 -2.011 -0.862 H29 R7P 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R7P C31 C29 SING N N 1 R7P C29 N32 SING N N 2 R7P C29 C28 SING N N 3 R7P N32 C33 SING N N 4 R7P C33 C35 SING N N 5 R7P C33 C36 SING N N 6 R7P C28 N27 SING N N 7 R7P N27 C36 SING N N 8 R7P N27 C5 SING N N 9 R7P C6 C5 DOUB Y N 10 R7P C6 C7 SING Y N 11 R7P C5 C4 SING Y N 12 R7P C7 C8 DOUB Y N 13 R7P C4 C3 DOUB Y N 14 R7P C8 C3 SING Y N 15 R7P C8 N9 SING N N 16 R7P C3 O2 SING N N 17 R7P C21 C20 SING N N 18 R7P C22 C20 DOUB Y N 19 R7P C22 C23 SING Y N 20 R7P C20 C19 SING Y N 21 R7P C23 C24 DOUB Y N 22 R7P N9 C10 SING N N 23 R7P O2 C1 SING N N 24 R7P C19 C18 DOUB Y N 25 R7P N26 C10 DOUB Y N 26 R7P N26 C25 SING Y N 27 R7P C10 N11 SING Y N 28 R7P C24 C18 SING Y N 29 R7P C24 C25 SING N N 30 R7P C18 N17 SING N N 31 R7P C25 C13 DOUB Y N 32 R7P N11 C12 DOUB Y N 33 R7P N17 C15 SING N N 34 R7P C13 C12 SING Y N 35 R7P C13 N14 SING N N 36 R7P C15 N14 SING N N 37 R7P C15 O16 DOUB N N 38 R7P C1 H1 SING N N 39 R7P C1 H2 SING N N 40 R7P C1 H3 SING N N 41 R7P C4 H4 SING N N 42 R7P C6 H5 SING N N 43 R7P C7 H6 SING N N 44 R7P C12 H7 SING N N 45 R7P C19 H8 SING N N 46 R7P C21 H9 SING N N 47 R7P C21 H10 SING N N 48 R7P C21 H11 SING N N 49 R7P C23 H12 SING N N 50 R7P C31 H13 SING N N 51 R7P C31 H14 SING N N 52 R7P C31 H15 SING N N 53 R7P C33 H16 SING N N 54 R7P C35 H17 SING N N 55 R7P C35 H18 SING N N 56 R7P C35 H19 SING N N 57 R7P C36 H20 SING N N 58 R7P C36 H21 SING N N 59 R7P N9 H22 SING N N 60 R7P N14 H23 SING N N 61 R7P N17 H24 SING N N 62 R7P C22 H25 SING N N 63 R7P C28 H26 SING N N 64 R7P C28 H27 SING N N 65 R7P C29 H28 SING N N 66 R7P N32 H29 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R7P SMILES ACDLabs 12.01 "COc1cc(ccc1Nc4ncc3NC(=O)Nc2cc(C)ccc2c3n4)N5CC(C)NC(C)C5" R7P InChI InChI 1.03 "InChI=1S/C25H29N7O2/c1-14-5-7-18-20(9-14)29-25(33)30-21-11-26-24(31-23(18)21)28-19-8-6-17(10-22(19)34-4)32-12-15(2)27-16(3)13-32/h5-11,15-16,27H,12-13H2,1-4H3,(H,26,28,31)(H2,29,30,33)/t15-,16+" R7P InChIKey InChI 1.03 YEUMCRKFUPOKOM-IYBDPMFKSA-N R7P SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc3NC(=O)Nc4cc(C)ccc4c3n2)N5C[C@H](C)N[C@H](C)C5" R7P SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc3NC(=O)Nc4cc(C)ccc4c3n2)N5C[CH](C)N[CH](C)C5" R7P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc-2c(c1)NC(=O)Nc3c2nc(nc3)Nc4ccc(cc4OC)N5C[C@H](N[C@H](C5)C)C" R7P SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc-2c(c1)NC(=O)Nc3c2nc(nc3)Nc4ccc(cc4OC)N5CC(NC(C5)C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R7P "SYSTEMATIC NAME" ACDLabs 12.01 "2-({4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]-2-methoxyphenyl}amino)-9-methyl-5,7-dihydro-6H-pyrimido[5,4-d][1,3]benzodiazepin-6-one" R7P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[4-[(3~{R},5~{S})-3,5-dimethylpiperazin-1-yl]-2-methoxy-phenyl]amino]-9-methyl-5,7-dihydropyrimido[5,4-d][1,3]benzodiazepin-6-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R7P "Create component" 2020-02-06 RCSB R7P "Initial release" 2021-02-10 RCSB ##