data_R8B # _chem_comp.id R8B _chem_comp.name "methyl 3-O-((7-carboxy) quinolin-2-yl)-methyl)-beta-D-galactopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-17 _chem_comp.pdbx_modified_date 2022-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R8B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R8B O7 O1 O 0 1 N N N 4.392 -0.363 7.314 7.142 -1.764 1.314 O7 R8B 1 R8B C17 C1 C 0 1 N N N 5.607 -0.689 7.240 7.204 -0.809 0.565 C17 R8B 2 R8B O6 O2 O 0 1 N N N 6.607 -0.016 7.697 8.402 -0.363 0.141 O6 R8B 3 R8B C15 C2 C 0 1 Y N N 5.944 -2.004 6.638 5.965 -0.142 0.116 C15 R8B 4 R8B C14 C3 C 0 1 Y N N 5.304 -2.656 5.546 6.043 0.960 -0.755 C14 R8B 5 R8B C13 C4 C 0 1 Y N N 5.777 -3.914 5.108 4.917 1.589 -1.181 C13 R8B 6 R8B C11 C5 C 0 1 Y N N 6.870 -4.422 5.841 3.656 1.141 -0.751 C11 R8B 7 R8B C10 C6 C 0 1 Y N N 7.472 -5.614 5.581 2.474 1.776 -1.177 C10 R8B 8 R8B C9 C7 C 0 1 Y N N 8.559 -5.995 6.378 1.281 1.291 -0.722 C9 R8B 9 R8B C16 C8 C 0 1 Y N N 7.010 -2.503 7.354 4.736 -0.609 0.552 C16 R8B 10 R8B C12 C9 C 0 1 Y N N 7.481 -3.729 7.035 3.561 0.032 0.126 C12 R8B 11 R8B N N1 N 0 1 Y N N 8.653 -4.086 7.711 2.361 -0.393 0.535 N R8B 12 R8B C8 C10 C 0 1 Y N N 9.109 -5.301 7.403 1.259 0.196 0.140 C8 R8B 13 R8B C7 C11 C 0 1 N N N 10.279 -5.969 8.030 -0.068 -0.325 0.631 C7 R8B 14 R8B O3 O3 O 0 1 N N N 10.899 -5.097 9.037 -1.123 0.463 0.077 O3 R8B 15 R8B C2 C12 C 0 1 N N S 12.005 -5.792 9.627 -2.430 0.051 0.482 C2 R8B 16 R8B C1 C13 C 0 1 N N S 13.329 -5.516 8.902 -3.368 1.262 0.495 C1 R8B 17 R8B O4 O4 O 0 1 N N N 13.564 -4.080 8.818 -3.378 1.872 -0.797 O4 R8B 18 R8B C3 C14 C 0 1 N N R 12.195 -5.409 11.089 -2.969 -0.988 -0.507 C3 R8B 19 R8B O2 O5 O 0 1 N N N 11.014 -5.776 11.807 -2.142 -2.152 -0.474 O2 R8B 20 R8B C4 C15 C 0 1 N N R 13.366 -6.235 11.642 -4.399 -1.365 -0.110 C4 R8B 21 R8B O1 O6 O 0 1 N N N 13.478 -6.047 13.045 -4.928 -2.291 -1.060 O1 R8B 22 R8B C6 C16 C 0 1 N N N 14.627 -5.383 13.506 -6.222 -2.796 -0.721 C6 R8B 23 R8B O O7 O 0 1 N N N 14.556 -5.861 10.943 -5.211 -0.189 -0.087 O R8B 24 R8B C C17 C 0 1 N N R 14.474 -6.296 9.579 -4.783 0.798 0.853 C R8B 25 R8B C5 C18 C 0 1 N N N 15.835 -6.030 8.960 -5.738 1.993 0.809 C5 R8B 26 R8B O5 O8 O 0 1 N N N 16.890 -6.673 9.671 -7.032 1.584 1.255 O5 R8B 27 R8B H1 H1 H 0 1 N N N 6.292 0.780 8.108 9.184 -0.834 0.458 H1 R8B 28 R8B H2 H2 H 0 1 N N N 4.462 -2.192 5.055 7.009 1.309 -1.089 H2 R8B 29 R8B H3 H3 H 0 1 N N N 5.336 -4.445 4.277 4.991 2.434 -1.849 H3 R8B 30 R8B H4 H4 H 0 1 N N N 7.121 -6.250 4.781 2.510 2.624 -1.845 H4 R8B 31 R8B H5 H5 H 0 1 N N N 9.009 -6.950 6.150 0.356 1.755 -1.030 H5 R8B 32 R8B H6 H6 H 0 1 N N N 7.458 -1.928 8.151 4.682 -1.458 1.217 H6 R8B 33 R8B H7 H7 H 0 1 N N N 9.947 -6.899 8.514 -0.188 -1.363 0.321 H7 R8B 34 R8B H8 H8 H 0 1 N N N 11.020 -6.205 7.252 -0.102 -0.264 1.719 H8 R8B 35 R8B H9 H9 H 0 1 N N N 11.816 -6.875 9.582 -2.382 -0.386 1.479 H9 R8B 36 R8B H10 H10 H 0 1 N N N 13.229 -5.908 7.879 -3.023 1.982 1.236 H10 R8B 37 R8B H11 H11 H 0 1 N N N 12.824 -3.662 8.393 -3.957 2.644 -0.863 H11 R8B 38 R8B H12 H12 H 0 1 N N N 12.411 -4.334 11.179 -2.969 -0.568 -1.513 H12 R8B 39 R8B H13 H13 H 0 1 N N N 11.115 -5.544 12.723 -2.425 -2.853 -1.077 H13 R8B 40 R8B H14 H14 H 0 1 N N N 13.151 -7.294 11.438 -4.393 -1.822 0.879 H14 R8B 41 R8B H15 H15 H 0 1 N N N 14.590 -5.303 14.602 -6.170 -3.312 0.237 H15 R8B 42 R8B H16 H16 H 0 1 N N N 15.522 -5.950 13.210 -6.928 -1.969 -0.651 H16 R8B 43 R8B H17 H17 H 0 1 N N N 14.669 -4.375 13.067 -6.553 -3.492 -1.492 H17 R8B 44 R8B H18 H18 H 0 1 N N N 14.254 -7.373 9.529 -4.782 0.370 1.855 H18 R8B 45 R8B H19 H19 H 0 1 N N N 15.830 -6.400 7.924 -5.362 2.782 1.460 H19 R8B 46 R8B H20 H20 H 0 1 N N N 16.018 -4.945 8.961 -5.807 2.366 -0.213 H20 R8B 47 R8B H21 H21 H 0 1 N N N 17.720 -6.480 9.250 -7.690 2.293 1.254 H21 R8B 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R8B C13 C14 DOUB Y N 1 R8B C13 C11 SING Y N 2 R8B C14 C15 SING Y N 3 R8B C10 C11 DOUB Y N 4 R8B C10 C9 SING Y N 5 R8B C11 C12 SING Y N 6 R8B C9 C8 DOUB Y N 7 R8B C15 C17 SING N N 8 R8B C15 C16 DOUB Y N 9 R8B C12 C16 SING Y N 10 R8B C12 N DOUB Y N 11 R8B C17 O7 DOUB N N 12 R8B C17 O6 SING N N 13 R8B C8 N SING Y N 14 R8B C8 C7 SING N N 15 R8B C7 O3 SING N N 16 R8B O4 C1 SING N N 17 R8B C1 C SING N N 18 R8B C1 C2 SING N N 19 R8B C5 C SING N N 20 R8B C5 O5 SING N N 21 R8B O3 C2 SING N N 22 R8B C O SING N N 23 R8B C2 C3 SING N N 24 R8B O C4 SING N N 25 R8B C3 C4 SING N N 26 R8B C3 O2 SING N N 27 R8B C4 O1 SING N N 28 R8B O1 C6 SING N N 29 R8B O6 H1 SING N N 30 R8B C14 H2 SING N N 31 R8B C13 H3 SING N N 32 R8B C10 H4 SING N N 33 R8B C9 H5 SING N N 34 R8B C16 H6 SING N N 35 R8B C7 H7 SING N N 36 R8B C7 H8 SING N N 37 R8B C2 H9 SING N N 38 R8B C1 H10 SING N N 39 R8B O4 H11 SING N N 40 R8B C3 H12 SING N N 41 R8B O2 H13 SING N N 42 R8B C4 H14 SING N N 43 R8B C6 H15 SING N N 44 R8B C6 H16 SING N N 45 R8B C6 H17 SING N N 46 R8B C H18 SING N N 47 R8B C5 H19 SING N N 48 R8B C5 H20 SING N N 49 R8B O5 H21 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R8B InChI InChI 1.03 "InChI=1S/C18H21NO8/c1-25-18-15(22)16(14(21)13(7-20)27-18)26-8-11-5-4-9-2-3-10(17(23)24)6-12(9)19-11/h2-6,13-16,18,20-22H,7-8H2,1H3,(H,23,24)/t13-,14+,15-,16+,18-/m1/s1" R8B InChIKey InChI 1.03 OBYVIVUJQDGTKI-RIUYPTKQSA-N R8B SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OCc2ccc3ccc(cc3n2)C(O)=O)[C@H]1O" R8B SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O)[CH](OCc2ccc3ccc(cc3n2)C(O)=O)[CH]1O" R8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O" R8B SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(C(O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id R8B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R8B "Create component" 2020-09-17 PDBE R8B "Initial release" 2021-07-28 RCSB R8B "Modify name" 2022-02-02 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R8B _pdbx_chem_comp_synonyms.name "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##