data_R8F # _chem_comp.id R8F _chem_comp.name "(1R,5S)-8-(9H-purin-6-yl)-2-oxa-8-azabicyclo[3.3.1]nona-3,6-diene-4,6-dicarbaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H11 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1~{R},5~{S})-8-(7~{H}-purin-6-yl)-2-oxa-8-azabicyclo[3.3.1]nona-3,6-diene-4,6-dicarbaldehyde" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 297.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R8F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BP6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R8F C01 C1 C 0 1 N N R N N N -21.486 1.863 -10.938 -0.102 -0.928 0.680 C01 R8F 1 R8F C02 C2 C 0 1 N N N N N N -21.836 -0.604 -10.539 -1.656 -1.816 -0.927 C02 R8F 2 R8F C03 C3 C 0 1 N N N N N N -20.824 -0.899 -11.332 -2.678 -1.125 -0.401 C03 R8F 3 R8F C04 C4 C 0 1 N N S N N N -19.944 0.232 -11.861 -2.470 -0.241 0.811 C04 R8F 4 R8F C05 C5 C 0 1 N N N N N N -18.924 0.631 -10.791 -2.030 1.110 0.289 C05 R8F 5 R8F C06 C6 C 0 1 N N N N N N -19.173 1.575 -9.922 -0.733 1.350 0.010 C06 R8F 6 R8F C07 C7 C 0 1 N N N N N N -20.842 1.403 -12.228 -1.309 -0.837 1.627 C07 R8F 7 R8F C08 C8 C 0 1 N N N N N N -20.508 -2.355 -11.670 -3.955 -1.221 -0.981 C08 R8F 8 R8F C09 C9 C 0 1 N N N N N N -17.711 -0.266 -10.565 -2.982 2.122 0.093 C09 R8F 9 R8F C10 C10 C 0 1 Y N N N N N -17.864 5.039 -7.553 3.892 -1.968 0.238 C10 R8F 10 R8F C11 C11 C 0 1 Y N N N N N -19.830 5.526 -8.108 3.897 0.161 -0.173 C11 R8F 11 R8F C12 C12 C 0 1 Y N N N N N -21.841 5.554 -8.944 3.179 2.323 -0.506 C12 R8F 12 R8F C13 C13 C 0 1 Y N N N N N -20.563 3.705 -9.398 1.568 0.749 -0.001 C13 R8F 13 R8F C14 C14 C 0 1 Y N N N N N -19.550 4.291 -8.660 2.567 -0.224 0.065 C14 R8F 14 R8F N01 N1 N 0 1 N N N N N N -20.412 2.403 -10.054 0.238 0.417 0.222 N01 R8F 15 R8F N02 N2 N 0 1 Y N N N N N -18.297 4.017 -8.286 2.600 -1.578 0.319 N02 R8F 16 R8F N03 N3 N 0 1 Y N N N N N -18.794 5.960 -7.436 4.652 -0.947 -0.047 N03 R8F 17 R8F N04 N4 N 0 1 Y N N N N N -20.960 6.216 -8.208 4.154 1.442 -0.450 N04 R8F 18 R8F N05 N5 N 0 1 Y N N N N N -21.694 4.372 -9.513 1.916 1.998 -0.297 N05 R8F 19 R8F O01 O1 O 0 1 N N N N N N -22.174 0.791 -10.290 -0.418 -1.813 -0.416 O01 R8F 20 R8F O02 O2 O 0 1 N Y N N N N -19.400 -2.766 -11.561 -4.885 -0.597 -0.509 O02 R8F 21 R8F H1 H1 H 0 1 N N N N N N -22.195 2.672 -11.170 0.741 -1.337 1.235 H1 R8F 22 R8F H2 H2 H 0 1 N N N N N N -22.411 -1.393 -10.077 -1.841 -2.407 -1.811 H2 R8F 23 R8F H3 H3 H 0 1 N N N N N N -19.410 -0.113 -12.759 -3.382 -0.158 1.401 H3 R8F 24 R8F H4 H4 H 0 1 N N N N N N -18.485 1.757 -9.110 -0.455 2.312 -0.393 H4 R8F 25 R8F H5 H5 H 0 1 N N N N N N -20.247 2.217 -12.668 -1.577 -1.831 1.985 H5 R8F 26 R8F H6 H6 H 0 1 N N N N N N -21.612 1.083 -12.945 -1.074 -0.187 2.469 H6 R8F 27 R8F O03 O3 O 0 1 N Y N N N N -16.826 0.335 -10.559 -4.153 1.912 0.343 O1 R8F 28 R8F H7 H7 H 0 1 N N N N N N -21.295 -3.012 -12.009 -4.110 -1.849 -1.846 H7 R8F 29 R8F H8 H8 H 0 1 N N N N N N -17.741 -1.337 -10.432 -2.674 3.088 -0.279 H8 R8F 30 R8F H9 H9 H 0 1 N N N N N N -16.880 5.103 -7.113 4.244 -2.977 0.393 H9 R8F 31 R8F H10 H10 H 0 1 N N N N N N -22.793 6.040 -9.097 3.420 3.351 -0.733 H10 R8F 32 R8F H11 H11 H 0 1 N N N N N N -17.779 3.193 -8.515 1.838 -2.145 0.518 H11 R8F 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R8F C07 C04 SING N N 1 R8F C07 C01 SING N N 2 R8F C04 C03 SING N N 3 R8F C04 C05 SING N N 4 R8F C08 O02 DOUB N N 5 R8F C08 C03 SING N N 6 R8F C03 C02 DOUB N N 7 R8F C01 O01 SING N N 8 R8F C01 N01 SING N N 9 R8F C05 C09 SING N N 10 R8F C05 C06 DOUB N N 11 R8F C02 O01 SING N N 12 R8F N01 C06 SING N N 13 R8F N01 C13 SING N N 14 R8F N05 C13 DOUB Y N 15 R8F N05 C12 SING Y N 16 R8F C13 C14 SING Y N 17 R8F C12 N04 DOUB Y N 18 R8F C14 N02 SING Y N 19 R8F C14 C11 DOUB Y N 20 R8F N02 C10 SING Y N 21 R8F N04 C11 SING Y N 22 R8F C11 N03 SING Y N 23 R8F C10 N03 DOUB Y N 24 R8F C01 H1 SING N N 25 R8F C02 H2 SING N N 26 R8F C04 H3 SING N N 27 R8F C06 H4 SING N N 28 R8F C07 H5 SING N N 29 R8F C07 H6 SING N N 30 R8F C09 O03 DOUB N N 31 R8F C08 H7 SING N N 32 R8F C09 H8 SING N N 33 R8F C10 H9 SING N N 34 R8F C12 H10 SING N N 35 R8F N02 H11 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R8F InChI InChI 1.06 "InChI=1S/C14H11N5O3/c20-3-8-2-19(11-1-10(8)9(4-21)5-22-11)14-12-13(16-6-15-12)17-7-18-14/h2-7,10-11H,1H2,(H,15,16,17,18)/t10-,11+/m0/s1" R8F InChIKey InChI 1.06 JDSDLPGCRCFXJZ-WDEREUQCSA-N R8F SMILES_CANONICAL CACTVS 3.385 "O=CC1=CO[C@@H]2C[C@H]1C(=CN2c3ncnc4nc[nH]c34)C=O" R8F SMILES CACTVS 3.385 "O=CC1=CO[CH]2C[CH]1C(=CN2c3ncnc4nc[nH]c34)C=O" R8F SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1[nH]c2c(n1)ncnc2N3C=C([C@@H]4C[C@H]3OC=C4C=O)C=O" R8F SMILES "OpenEye OEToolkits" 3.1.0.0 "c1[nH]c2c(n1)ncnc2N3C=C(C4CC3OC=C4C=O)C=O" # _pdbx_chem_comp_identifier.comp_id R8F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},5~{S})-8-(7~{H}-purin-6-yl)-2-oxa-8-azabicyclo[3.3.1]nona-3,6-diene-4,6-dicarbaldehyde" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R8F _pdbx_chem_comp_synonyms.name "(1~{R},5~{S})-8-(7~{H}-purin-6-yl)-2-oxa-8-azabicyclo[3.3.1]nona-3,6-diene-4,6-dicarbaldehyde" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R8F "Create component" 2022-11-26 PDBE R8F "Modify leaving atom flag" 2023-09-19 PDBE R8F "Initial release" 2023-11-29 RCSB R8F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R8F _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #