data_R8L # _chem_comp.id R8L _chem_comp.name "(E)-3-[2-[(2R,3S)-3-[(1R)-1-aminocarbonyloxypropyl]oxiran-2-yl]phenyl]prop-2-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.299 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R8L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W6Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R8L C7 C1 C 0 1 N N N N N N -9.102 8.730 20.717 -4.165 -0.635 0.361 C7 R8L 1 R8L C8 C2 C 0 1 N N N N N N -8.681 7.416 20.180 -3.071 0.334 0.429 C8 R8L 2 R8L C10 C3 C 0 1 Y N N N N N -7.473 6.081 18.428 -0.910 1.187 -0.327 C10 R8L 3 R8L C13 C4 C 0 1 Y N N N N N -7.511 4.443 16.653 1.213 1.988 -1.118 C13 R8L 4 R8L C15 C5 C 0 1 Y N N N N N -5.923 4.222 18.429 0.075 3.150 0.649 C15 R8L 5 R8L C17 C6 C 0 1 N N R N N N -9.001 6.475 16.473 0.253 -0.063 -2.178 C17 R8L 6 R8L C21 C7 C 0 1 N N N N N N -10.411 3.636 16.347 1.976 -2.849 -0.021 C21 R8L 7 R8L C22 C8 C 0 1 N N N N N N -10.734 2.734 15.168 2.344 -2.991 1.457 C22 R8L 8 R8L C24 C9 C 0 1 N N N N N N -11.608 4.392 18.610 2.345 0.042 1.263 C24 R8L 9 R8L C12 C10 C 0 1 Y N N N N N -8.021 5.606 17.225 0.189 1.068 -1.184 C12 R8L 10 R8L C14 C11 C 0 1 Y N N N N N -6.467 3.759 17.252 1.156 3.028 -0.206 C14 R8L 11 R8L C16 C12 C 0 1 Y N N N N N -6.418 5.373 19.018 -0.960 2.240 0.591 C16 R8L 12 R8L C18 C13 C 0 1 N N R N N N -10.371 6.207 16.043 0.838 -1.395 -1.704 C18 R8L 13 R8L C19 C14 C 0 1 N N R N N N -11.184 4.940 16.293 1.318 -1.488 -0.254 C19 R8L 14 R8L C9 C15 C 0 1 N N N N N N -7.975 7.311 19.056 -2.011 0.213 -0.396 C9 R8L 15 R8L N25 N1 N 0 1 N N N N N N -10.379 4.743 18.980 3.219 1.021 1.570 N25 R8L 16 R8L O11 O1 O 0 1 N N N N N N -9.082 9.783 20.050 -4.116 -1.552 -0.435 O11 R8L 17 R8L O20 O2 O 0 1 N N N N N N -11.993 5.059 17.500 2.282 -0.433 0.004 O20 R8L 18 R8L O23 O3 O 0 1 N N N N N N -9.275 6.090 15.102 1.544 -0.518 -2.586 O23 R8L 19 R8L O26 O4 O 0 1 N N N N N N -12.304 3.557 19.156 1.615 -0.412 2.121 O26 R8L 20 R8L H2 H2 H 0 1 N N N N N N -8.954 6.518 20.715 -3.113 1.146 1.140 H2 R8L 21 R8L H3 H3 H 0 1 N N N N N N -7.935 4.071 15.732 2.062 1.898 -1.780 H3 R8L 22 R8L H4 H4 H 0 1 N N N N N N -5.109 3.686 18.894 0.038 3.964 1.358 H4 R8L 23 R8L H5 H5 H 0 1 N N N N N N -8.786 7.547 16.590 -0.552 -0.095 -2.912 H5 R8L 24 R8L H6 H6 H 0 1 N N N N N N -10.668 3.109 17.278 2.878 -2.926 -0.629 H6 R8L 25 R8L H7 H7 H 0 1 N N N N N N -9.334 3.861 16.338 1.281 -3.641 -0.300 H7 R8L 26 R8L H8 H8 H 0 1 N N N N N N -10.153 1.803 15.248 3.039 -2.199 1.736 H8 R8L 27 R8L H9 H9 H 0 1 N N N N N N -11.808 2.497 15.171 1.443 -2.914 2.065 H9 R8L 28 R8L H10 H10 H 0 1 N N N N N N -10.475 3.249 14.231 2.813 -3.961 1.624 H10 R8L 29 R8L H11 H11 H 0 1 N N N N N N -6.079 2.861 16.795 1.962 3.746 -0.159 H11 R8L 30 R8L H12 H12 H 0 1 N N N N N N -5.986 5.729 19.942 -1.807 2.342 1.254 H12 R8L 31 R8L H13 H13 H 0 1 N N N N N N -10.992 7.106 15.915 0.421 -2.311 -2.124 H13 R8L 32 R8L H14 H14 H 0 1 N N N N N N -11.881 4.851 15.447 0.468 -1.375 0.418 H14 R8L 33 R8L H15 H15 H 0 1 N N N N N N -7.745 8.236 18.548 -1.969 -0.600 -1.106 H15 R8L 34 R8L H16 H16 H 0 1 N N N N N N -9.951 4.307 19.772 3.264 1.363 2.476 H16 R8L 35 R8L H17 H17 H 0 1 N N N N N N -9.883 5.443 18.466 3.802 1.383 0.885 H17 R8L 36 R8L O1 O5 O 0 1 N N N N N N -9.521 8.707 21.987 -5.226 -0.513 1.186 O1 R8L 37 R8L H1 H1 H 0 1 N N N N N N -9.778 9.582 22.252 -5.897 -1.199 1.067 H1 R8L 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R8L O23 C18 SING N N 1 R8L O23 C17 SING N N 2 R8L C22 C21 SING N N 3 R8L C18 C19 SING N N 4 R8L C18 C17 SING N N 5 R8L C19 C21 SING N N 6 R8L C19 O20 SING N N 7 R8L C17 C12 SING N N 8 R8L C13 C12 DOUB Y N 9 R8L C13 C14 SING Y N 10 R8L C12 C10 SING Y N 11 R8L C14 C15 DOUB Y N 12 R8L O20 C24 SING N N 13 R8L C10 C16 DOUB Y N 14 R8L C10 C9 SING N N 15 R8L C15 C16 SING Y N 16 R8L C24 N25 SING N N 17 R8L C24 O26 DOUB N N 18 R8L C9 C8 DOUB N E 19 R8L O11 C7 DOUB N N 20 R8L C8 C7 SING N N 21 R8L C8 H2 SING N N 22 R8L C13 H3 SING N N 23 R8L C15 H4 SING N N 24 R8L C17 H5 SING N N 25 R8L C21 H6 SING N N 26 R8L C21 H7 SING N N 27 R8L C22 H8 SING N N 28 R8L C22 H9 SING N N 29 R8L C22 H10 SING N N 30 R8L C14 H11 SING N N 31 R8L C16 H12 SING N N 32 R8L C18 H13 SING N N 33 R8L C19 H14 SING N N 34 R8L C9 H15 SING N N 35 R8L N25 H16 SING N N 36 R8L N25 H17 SING N N 37 R8L C7 O1 SING N N 38 R8L O1 H1 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R8L InChI InChI 1.06 "InChI=1S/C15H17NO5/c1-2-11(20-15(16)19)14-13(21-14)10-6-4-3-5-9(10)7-8-12(17)18/h3-8,11,13-14H,2H2,1H3,(H2,16,19)(H,17,18)/b8-7+/t11-,13-,14+/m1/s1" R8L InChIKey InChI 1.06 APIHDLCQFHISLU-PQPVHHHVSA-N R8L SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](OC(N)=O)[C@@H]1O[C@@H]1c2ccccc2\C=C\C(O)=O" R8L SMILES CACTVS 3.385 "CC[CH](OC(N)=O)[CH]1O[CH]1c2ccccc2C=CC(O)=O" R8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H]([C@H]1[C@H](O1)c2ccccc2/C=C/C(=O)O)OC(=O)N" R8L SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C1C(O1)c2ccccc2C=CC(=O)O)OC(=O)N" # _pdbx_chem_comp_identifier.comp_id R8L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-3-[2-[(2~{R},3~{S})-3-[(1~{R})-1-aminocarbonyloxypropyl]oxiran-2-yl]phenyl]prop-2-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R8L "Create component" 2023-09-05 PDBC R8L "Initial release" 2024-06-12 RCSB R8L "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id R8L _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom N _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #