data_R8U # _chem_comp.id R8U _chem_comp.name Zoliflodacin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 F N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-26 _chem_comp.pdbx_modified_date 2023-02-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.438 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R8U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BP2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R8U C1 C1 C 0 1 N N S 12.885 47.305 46.584 2.737 0.545 -0.401 C1 R8U 1 R8U C2 C2 C 0 1 N N S 11.724 46.335 46.259 2.458 0.985 -1.832 C2 R8U 2 R8U C3 C3 C 0 1 N N N 11.481 45.278 47.313 3.582 0.499 -2.764 C3 R8U 3 R8U O1 O1 O 0 1 N N N 11.968 45.611 45.037 2.436 2.412 -1.957 O1 R8U 4 R8U C4 C4 C 0 1 N N R 12.203 46.457 43.900 1.603 3.102 -1.027 C4 R8U 5 R8U C5 C5 C 0 1 N N N 12.348 45.556 42.696 1.737 4.611 -1.227 C5 R8U 6 R8U C6 C6 C 0 1 N N N 13.421 47.309 44.195 2.086 2.724 0.380 C6 R8U 7 R8U N1 N1 N 0 1 N N N 13.174 48.122 45.387 1.871 1.280 0.541 N1 R8U 8 R8U C7 C7 C 0 1 Y N N 13.139 49.569 45.442 0.525 0.927 0.465 C7 R8U 9 R8U C8 C8 C 0 1 Y N N 13.363 50.194 46.675 0.086 -0.227 -0.180 C8 R8U 10 R8U C9 C9 C 0 1 N N N 13.612 49.331 47.879 1.059 -1.240 -0.740 C9 R8U 11 R8U C10 C10 C 0 1 N N N 12.624 48.167 47.877 2.453 -0.942 -0.184 C10 R8U 12 R8U C11 C11 C 0 1 N N N 11.222 48.769 47.935 3.470 -1.834 -0.830 C11 R8U 13 R8U O2 O2 O 0 1 N N N 10.673 49.217 46.951 3.324 -2.201 -1.974 O2 R8U 14 R8U N2 N2 N 0 1 N N N 10.566 48.792 49.135 4.522 -2.302 -0.135 N2 R8U 15 R8U C12 C12 C 0 1 N N N 10.986 48.220 50.297 4.577 -2.200 1.201 C12 R8U 16 R8U O3 O3 O 0 1 N N N 10.362 48.350 51.330 5.587 -2.533 1.785 O3 R8U 17 R8U N3 N3 N 0 1 N N N 12.149 47.501 50.226 3.525 -1.753 1.906 N3 R8U 18 R8U C13 C13 C 0 1 N N N 13.004 47.430 49.153 2.453 -1.215 1.303 C13 R8U 19 R8U O4 O4 O 0 1 N N N 14.044 46.808 49.226 1.474 -0.958 1.963 O4 R8U 20 R8U C14 C14 C 0 1 Y N N 13.297 51.581 46.798 -1.250 -0.537 -0.316 C14 R8U 21 R8U C15 C15 C 0 1 Y N N 13.027 52.358 45.669 -2.175 0.315 0.285 C15 R8U 22 R8U C16 C16 C 0 1 Y N N 12.820 51.730 44.448 -1.749 1.451 1.008 C16 R8U 23 R8U O5 O5 O 0 1 Y N N 12.584 52.674 43.511 -2.846 2.059 1.473 O5 R8U 24 R8U N4 N4 N 0 1 Y N N 12.641 53.942 44.178 -3.994 1.341 1.054 N4 R8U 25 R8U C17 C17 C 0 1 Y N N 12.906 53.736 45.443 -3.631 0.301 0.349 C17 R8U 26 R8U N5 N5 N 0 1 N N N 13.006 54.852 46.320 -4.478 -0.641 -0.230 N5 R8U 27 R8U C18 C18 C 0 1 N N S 12.603 56.198 45.851 -4.050 -1.875 -0.905 C18 R8U 28 R8U C19 C19 C 0 1 N N N 11.107 56.324 45.625 -3.299 -2.787 0.068 C19 R8U 29 R8U C20 C20 C 0 1 N N N 13.120 57.053 47.014 -5.373 -2.530 -1.346 C20 R8U 30 R8U O6 O6 O 0 1 N N N 13.262 56.131 48.121 -6.397 -1.604 -0.879 O6 R8U 31 R8U C21 C21 C 0 1 N N N 13.443 54.883 47.625 -5.816 -0.572 -0.257 C21 R8U 32 R8U O7 O7 O 0 1 N N N 13.961 54.012 48.293 -6.443 0.345 0.234 O7 R8U 33 R8U C22 C22 C 0 1 Y N N 12.862 50.358 44.316 -0.397 1.757 1.119 C22 R8U 34 R8U F1 F1 F 0 1 N N N 12.651 49.814 43.101 -0.019 2.810 1.875 F1 R8U 35 R8U H1 H1 H 0 1 N N N 13.771 46.687 46.791 3.779 0.757 -0.146 H1 R8U 36 R8U H2 H2 H 0 1 N N N 10.806 46.931 46.150 1.509 0.582 -2.179 H2 R8U 37 R8U H5 H3 H 0 1 N N N 11.286 45.763 48.281 3.540 -0.587 -2.846 H5 R8U 38 R8U H3 H4 H 0 1 N N N 10.612 44.668 47.027 3.453 0.943 -3.751 H3 R8U 39 R8U H4 H5 H 0 1 N N N 12.369 44.634 47.398 4.547 0.796 -2.355 H4 R8U 40 R8U H6 H6 H 0 1 N N N 11.339 47.119 43.744 0.567 2.802 -1.155 H6 R8U 41 R8U H9 H7 H 0 1 N N N 11.423 44.977 42.557 2.782 4.901 -1.112 H9 R8U 42 R8U H7 H8 H 0 1 N N N 12.536 46.167 41.801 1.394 4.878 -2.226 H7 R8U 43 R8U H8 H9 H 0 1 N N N 13.191 44.867 42.853 1.132 5.131 -0.484 H8 R8U 44 R8U H10 H10 H 0 1 N N N 14.290 46.658 44.370 3.162 2.928 0.439 H10 R8U 45 R8U H11 H11 H 0 1 N N N 13.623 47.968 43.338 1.580 3.307 1.129 H11 R8U 46 R8U H12 H12 H 0 1 N N N 14.640 48.941 47.845 0.753 -2.241 -0.430 H12 R8U 47 R8U H13 H13 H 0 1 N N N 13.476 49.927 48.793 1.068 -1.186 -1.825 H13 R8U 48 R8U H14 H14 H 0 1 N N N 9.692 49.277 49.161 5.252 -2.721 -0.613 H14 R8U 49 R8U H15 H15 H 0 1 N N N 12.402 46.974 51.037 3.546 -1.806 2.873 H15 R8U 50 R8U H16 H16 H 0 1 N N N 13.453 52.051 47.758 -1.566 -1.419 -0.853 H16 R8U 51 R8U H17 H17 H 0 1 N N N 13.144 56.460 44.930 -3.430 -1.644 -1.770 H17 R8U 52 R8U H18 H18 H 0 1 N N N 10.872 57.342 45.279 -4.008 -3.254 0.750 H18 R8U 53 R8U H19 H19 H 0 1 N N N 10.789 55.596 44.864 -2.770 -3.559 -0.492 H19 R8U 54 R8U H20 H20 H 0 1 N N N 10.576 56.126 46.568 -2.581 -2.197 0.638 H20 R8U 55 R8U H21 H21 H 0 1 N N N 14.090 57.505 46.760 -5.410 -2.623 -2.431 H21 R8U 56 R8U H22 H22 H 0 1 N N N 12.399 57.846 47.261 -5.495 -3.504 -0.873 H22 R8U 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R8U C5 C4 SING N N 1 R8U F1 C22 SING N N 2 R8U O5 N4 SING Y N 3 R8U O5 C16 SING Y N 4 R8U C4 C6 SING N N 5 R8U C4 O1 SING N N 6 R8U N4 C17 DOUB Y N 7 R8U C6 N1 SING N N 8 R8U C22 C16 SING Y N 9 R8U C22 C7 DOUB Y N 10 R8U C16 C15 DOUB Y N 11 R8U O1 C2 SING N N 12 R8U N1 C7 SING N N 13 R8U N1 C1 SING N N 14 R8U C7 C8 SING Y N 15 R8U C17 C15 SING Y N 16 R8U C17 N5 SING N N 17 R8U C19 C18 SING N N 18 R8U C15 C14 SING Y N 19 R8U C18 N5 SING N N 20 R8U C18 C20 SING N N 21 R8U C2 C1 SING N N 22 R8U C2 C3 SING N N 23 R8U N5 C21 SING N N 24 R8U C1 C10 SING N N 25 R8U C8 C14 DOUB Y N 26 R8U C8 C9 SING N N 27 R8U O2 C11 DOUB N N 28 R8U C20 O6 SING N N 29 R8U C21 O6 SING N N 30 R8U C21 O7 DOUB N N 31 R8U C10 C9 SING N N 32 R8U C10 C11 SING N N 33 R8U C10 C13 SING N N 34 R8U C11 N2 SING N N 35 R8U N2 C12 SING N N 36 R8U C13 O4 DOUB N N 37 R8U C13 N3 SING N N 38 R8U N3 C12 SING N N 39 R8U C12 O3 DOUB N N 40 R8U C1 H1 SING N N 41 R8U C2 H2 SING N N 42 R8U C3 H5 SING N N 43 R8U C3 H3 SING N N 44 R8U C3 H4 SING N N 45 R8U C4 H6 SING N N 46 R8U C5 H9 SING N N 47 R8U C5 H7 SING N N 48 R8U C5 H8 SING N N 49 R8U C6 H10 SING N N 50 R8U C6 H11 SING N N 51 R8U C9 H12 SING N N 52 R8U C9 H13 SING N N 53 R8U N2 H14 SING N N 54 R8U N3 H15 SING N N 55 R8U C14 H16 SING N N 56 R8U C18 H17 SING N N 57 R8U C19 H18 SING N N 58 R8U C19 H19 SING N N 59 R8U C19 H20 SING N N 60 R8U C20 H21 SING N N 61 R8U C20 H22 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R8U InChI InChI 1.06 "InChI=1S/C22H22FN5O7/c1-8-7-33-21(32)28(8)17-12-4-11-5-22(18(29)24-20(31)25-19(22)30)16-10(3)34-9(2)6-27(16)14(11)13(23)15(12)35-26-17/h4,8-10,16H,5-7H2,1-3H3,(H2,24,25,29,30,31)/t8-,9+,10-,16+/m0/s1" R8U InChIKey InChI 1.06 ZSWMIFNWDQEXDT-ZESJGQACSA-N R8U SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN2[C@H]([C@H](C)O1)C3(Cc4cc5c(onc5N6[C@@H](C)COC6=O)c(F)c24)C(=O)NC(=O)NC3=O" R8U SMILES CACTVS 3.385 "C[CH]1CN2[CH]([CH](C)O1)C3(Cc4cc5c(onc5N6[CH](C)COC6=O)c(F)c24)C(=O)NC(=O)NC3=O" R8U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CN2c3c(cc4c(c3F)onc4N5[C@H](COC5=O)C)CC6([C@H]2[C@@H](O1)C)C(=O)NC(=O)NC6=O" R8U SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CN2c3c(cc4c(c3F)onc4N5C(COC5=O)C)CC6(C2C(O1)C)C(=O)NC(=O)NC6=O" # _pdbx_chem_comp_identifier.comp_id R8U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R8U "Create component" 2022-11-26 PDBE R8U "Initial release" 2023-02-08 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id R8U _pdbx_chem_comp_synonyms.name "(4'~{R},6'~{S},7'~{S})-17'-fluoranyl-4',6'-dimethyl-13'-[(4~{S})-4-methyl-2-oxidanylidene-1,3-oxazolidin-3-yl]spiro[1,3-diazinane-5,8'-5,15-dioxa-2,14-diazatetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(17),10,12(16),13-tetraene]-2,4,6-trione" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #