data_R9X # _chem_comp.id R9X _chem_comp.name "[(R)-(decanoylamino)-naphthalen-1-yl-methyl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-28 _chem_comp.pdbx_modified_date 2023-07-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 391.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R9X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BRN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R9X C10 C1 C 0 1 N N N -3.109 51.966 -27.198 0.324 0.290 0.025 C10 R9X 1 R9X C21 C2 C 0 1 Y N N -7.848 53.743 -28.830 -5.005 -1.634 -2.330 C21 R9X 2 R9X C22 C3 C 0 1 Y N N -6.823 53.686 -27.941 -4.078 -0.949 -1.606 C22 R9X 3 R9X C23 C4 C 0 1 Y N N -5.886 54.732 -27.857 -4.077 -1.051 -0.204 C23 R9X 4 R9X C01 C5 C 0 1 N N N -10.411 53.017 -32.588 11.533 -0.767 0.086 C01 R9X 5 R9X C02 C6 C 0 1 N N N -10.154 51.806 -33.486 10.224 -0.691 -0.704 C02 R9X 6 R9X C03 C7 C 0 1 N N N -9.175 50.859 -32.788 9.053 -0.521 0.265 C03 R9X 7 R9X C04 C8 C 0 1 N N N -7.866 51.601 -32.481 7.745 -0.445 -0.525 C04 R9X 8 R9X C05 C9 C 0 1 N N N -7.014 50.781 -31.504 6.573 -0.276 0.445 C05 R9X 9 R9X C06 C10 C 0 1 N N N -5.943 51.662 -30.847 5.265 -0.200 -0.345 C06 R9X 10 R9X C07 C11 C 0 1 N N N -4.760 50.788 -30.421 4.093 -0.030 0.624 C07 R9X 11 R9X C08 C12 C 0 1 N N N -3.779 51.583 -29.559 2.785 0.046 -0.166 C08 R9X 12 R9X C09 C13 C 0 1 N N N -4.236 51.553 -28.103 1.613 0.215 0.803 C09 R9X 13 R9X C13 C14 C 0 1 N N R -4.359 53.717 -25.894 -2.099 0.513 -0.082 C13 R9X 14 R9X C14 C15 C 0 1 Y N N -4.784 54.742 -26.961 -3.136 -0.360 0.577 C14 R9X 15 R9X C15 C16 C 0 1 Y N N -3.964 55.830 -27.001 -3.165 -0.482 1.932 C15 R9X 16 R9X C16 C17 C 0 1 Y N N -4.127 56.914 -27.855 -4.117 -1.285 2.560 C16 R9X 17 R9X C17 C18 C 0 1 Y N N -5.164 56.928 -28.725 -5.043 -1.970 1.836 C17 R9X 18 R9X C18 C19 C 0 1 Y N N -6.060 55.844 -28.742 -5.044 -1.868 0.434 C18 R9X 19 R9X C19 C20 C 0 1 Y N N -7.133 55.863 -29.650 -5.985 -2.560 -0.348 C19 R9X 20 R9X C20 C21 C 0 1 Y N N -8.008 54.827 -29.688 -5.960 -2.432 -1.702 C20 R9X 21 R9X N12 N1 N 0 1 N N N -3.188 52.912 -26.260 -0.847 0.440 0.674 N12 R9X 22 R9X O11 O1 O 0 1 N N N -2.033 51.447 -27.298 0.342 0.221 -1.186 O11 R9X 23 R9X O25 O2 O 0 1 N N N -5.423 51.132 -25.421 -3.036 2.667 1.259 O25 R9X 24 R9X O26 O3 O 0 1 N N N -7.052 53.120 -25.121 -1.531 3.191 -0.698 O26 R9X 25 R9X O27 O4 O 0 1 N N N -5.161 52.715 -23.516 -3.993 2.341 -1.054 O27 R9X 26 R9X P24 P1 P 0 1 N N N -5.567 52.637 -25.025 -2.690 2.238 -0.115 P24 R9X 27 R9X H1 H1 H 0 1 N N N -8.556 52.928 -28.872 -5.004 -1.553 -3.407 H1 R9X 28 R9X H2 H2 H 0 1 N N N -6.726 52.829 -27.292 -3.347 -0.331 -2.106 H2 R9X 29 R9X H3 H3 H 0 1 N N N -11.114 53.701 -33.086 11.665 0.151 0.659 H3 R9X 30 R9X H4 H4 H 0 1 N N N -10.841 52.681 -31.633 11.498 -1.618 0.766 H4 R9X 31 R9X H5 H5 H 0 1 N N N -9.462 53.541 -32.399 12.367 -0.887 -0.604 H5 R9X 32 R9X H6 H6 H 0 1 N N N -9.724 52.141 -34.441 10.260 0.161 -1.384 H6 R9X 33 R9X H7 H7 H 0 1 N N N -11.102 51.281 -33.675 10.092 -1.608 -1.277 H7 R9X 34 R9X H8 H8 H 0 1 N N N -9.621 50.500 -31.849 9.018 -1.373 0.945 H8 R9X 35 R9X H9 H9 H 0 1 N N N -8.964 50.002 -33.445 9.185 0.396 0.839 H9 R9X 36 R9X H10 H10 H 0 1 N N N -7.305 51.752 -33.415 7.780 0.406 -1.204 H10 R9X 37 R9X H11 H11 H 0 1 N N N -8.098 52.578 -32.031 7.612 -1.363 -1.098 H11 R9X 38 R9X H12 H12 H 0 1 N N N -7.664 50.360 -30.723 6.538 -1.127 1.124 H12 R9X 39 R9X H13 H13 H 0 1 N N N -6.523 49.963 -32.052 6.705 0.642 1.018 H13 R9X 40 R9X H14 H14 H 0 1 N N N -5.599 52.420 -31.566 5.300 0.652 -1.025 H14 R9X 41 R9X H15 H15 H 0 1 N N N -6.369 52.160 -29.964 5.132 -1.117 -0.919 H15 R9X 42 R9X H16 H16 H 0 1 N N N -5.135 49.931 -29.843 4.058 -0.882 1.304 H16 R9X 43 R9X H17 H17 H 0 1 N N N -4.238 50.425 -31.319 4.225 0.887 1.197 H17 R9X 44 R9X H18 H18 H 0 1 N N N -2.777 51.136 -29.637 2.820 0.897 -0.846 H18 R9X 45 R9X H19 H19 H 0 1 N N N -3.744 52.625 -29.910 2.652 -0.872 -0.739 H19 R9X 46 R9X H20 H20 H 0 1 N N N -5.080 52.246 -27.972 1.745 1.133 1.377 H20 R9X 47 R9X H21 H21 H 0 1 N N N -4.556 50.533 -27.843 1.578 -0.636 1.483 H21 R9X 48 R9X H22 H22 H 0 1 N N N -4.002 54.346 -25.065 -1.929 0.168 -1.102 H22 R9X 49 R9X H23 H23 H 0 1 N N N -3.127 55.851 -26.319 -2.441 0.050 2.531 H23 R9X 50 R9X H24 H24 H 0 1 N N N -3.431 57.739 -27.825 -4.118 -1.365 3.637 H24 R9X 51 R9X H25 H25 H 0 1 N N N -5.302 57.761 -29.398 -5.774 -2.588 2.335 H25 R9X 52 R9X H26 H26 H 0 1 N N N -7.261 56.702 -30.317 -6.728 -3.185 0.125 H26 R9X 53 R9X H27 H27 H 0 1 N N N -8.832 54.844 -30.386 -6.685 -2.965 -2.300 H27 R9X 54 R9X H28 H28 H 0 1 N N N -2.350 53.094 -25.746 -0.861 0.500 1.643 H28 R9X 55 R9X H29 H29 H 0 1 N N N -7.602 52.400 -25.406 -0.714 3.179 -0.181 H29 R9X 56 R9X H30 H30 H 0 1 N N N -4.928 51.848 -23.205 -4.733 1.792 -0.761 H30 R9X 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R9X C02 C03 SING N N 1 R9X C02 C01 SING N N 2 R9X C03 C04 SING N N 3 R9X C04 C05 SING N N 4 R9X C05 C06 SING N N 5 R9X C06 C07 SING N N 6 R9X C07 C08 SING N N 7 R9X C20 C19 DOUB Y N 8 R9X C20 C21 SING Y N 9 R9X C19 C18 SING Y N 10 R9X C08 C09 SING N N 11 R9X C21 C22 DOUB Y N 12 R9X C18 C17 SING Y N 13 R9X C18 C23 DOUB Y N 14 R9X C17 C16 DOUB Y N 15 R9X C09 C10 SING N N 16 R9X C22 C23 SING Y N 17 R9X C23 C14 SING Y N 18 R9X C16 C15 SING Y N 19 R9X O11 C10 DOUB N N 20 R9X C10 N12 SING N N 21 R9X C15 C14 DOUB Y N 22 R9X C14 C13 SING N N 23 R9X N12 C13 SING N N 24 R9X C13 P24 SING N N 25 R9X O25 P24 DOUB N N 26 R9X O26 P24 SING N N 27 R9X P24 O27 SING N N 28 R9X C21 H1 SING N N 29 R9X C22 H2 SING N N 30 R9X C01 H3 SING N N 31 R9X C01 H4 SING N N 32 R9X C01 H5 SING N N 33 R9X C02 H6 SING N N 34 R9X C02 H7 SING N N 35 R9X C03 H8 SING N N 36 R9X C03 H9 SING N N 37 R9X C04 H10 SING N N 38 R9X C04 H11 SING N N 39 R9X C05 H12 SING N N 40 R9X C05 H13 SING N N 41 R9X C06 H14 SING N N 42 R9X C06 H15 SING N N 43 R9X C07 H16 SING N N 44 R9X C07 H17 SING N N 45 R9X C08 H18 SING N N 46 R9X C08 H19 SING N N 47 R9X C09 H20 SING N N 48 R9X C09 H21 SING N N 49 R9X C13 H22 SING N N 50 R9X C15 H23 SING N N 51 R9X C16 H24 SING N N 52 R9X C17 H25 SING N N 53 R9X C19 H26 SING N N 54 R9X C20 H27 SING N N 55 R9X N12 H28 SING N N 56 R9X O26 H29 SING N N 57 R9X O27 H30 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R9X InChI InChI 1.06 "InChI=1S/C21H30NO4P/c1-2-3-4-5-6-7-8-16-20(23)22-21(27(24,25)26)19-15-11-13-17-12-9-10-14-18(17)19/h9-15,21H,2-8,16H2,1H3,(H,22,23)(H2,24,25,26)/t21-/m1/s1" R9X InChIKey InChI 1.06 QQNUSDSQHYRTKZ-OAQYLSRUSA-N R9X SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCC(=O)N[C@@H](c1cccc2ccccc12)[P](O)(O)=O" R9X SMILES CACTVS 3.385 "CCCCCCCCCC(=O)N[CH](c1cccc2ccccc12)[P](O)(O)=O" R9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)N[C@@H](c1cccc2c1cccc2)P(=O)(O)O" R9X SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NC(c1cccc2c1cccc2)P(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id R9X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(~{R})-(decanoylamino)-naphthalen-1-yl-methyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R9X "Create component" 2022-11-28 PDBE R9X "Other modification" 2023-07-14 PDBE R9X "Initial release" 2023-08-02 RCSB #