data_RAE # _chem_comp.id RAE _chem_comp.name alpha-L-Olivopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;alpha-L-Olivose; 2,6-dideoxy-alpha-L-arabino-hexopyranose; 2,6-dideoxy-alpha-L-glucopyranose; 2,6-dideoxy-alpha-L-mannopyranose; 2-deoxy-alpha-L-quinovopyranose; 2-deoxy-alpha-L-rhamnoopyranose; L-Olivose; Olivose; 2-DEOXY-ALPHA-RHAMNOSE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-11 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RAE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1M7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RAE alpha-L-Olivose PDB ? 2 RAE "2,6-dideoxy-alpha-L-arabino-hexopyranose" PDB ? 3 RAE "2,6-dideoxy-alpha-L-glucopyranose" PDB ? 4 RAE "2,6-dideoxy-alpha-L-mannopyranose" PDB ? 5 RAE 2-deoxy-alpha-L-quinovopyranose PDB ? 6 RAE 2-deoxy-alpha-L-rhamnoopyranose PDB ? 7 RAE L-Olivose PDB ? 8 RAE Olivose PDB ? 9 RAE 2-DEOXY-ALPHA-RHAMNOSE PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RAE C1 C1 C 0 1 N N R -6.326 21.885 32.477 1.591 -0.860 -0.299 C1 RAE 1 RAE C2 C2 C 0 1 N N N -7.499 22.800 32.144 0.285 -1.588 -0.632 C2 RAE 2 RAE C3 C3 C 0 1 N N S -7.675 23.868 33.226 -0.862 -0.947 0.154 C3 RAE 3 RAE O3 O3 O 0 1 N N N -8.678 24.816 32.798 -2.096 -1.572 -0.206 O3 RAE 4 RAE C4 C4 C 0 1 N N R -6.339 24.597 33.457 -0.926 0.546 -0.183 C4 RAE 5 RAE O4 O4 O 0 1 N N N -6.466 25.561 34.483 -1.947 1.169 0.599 O4 RAE 6 RAE C5 C5 C 0 1 N N S -5.249 23.600 33.806 0.426 1.191 0.132 C5 RAE 7 RAE O5 O5 O 0 1 N N N -5.129 22.654 32.730 1.453 0.528 -0.608 O5 RAE 8 RAE C6 C6 C 0 1 N N N -3.919 24.304 34.040 0.389 2.670 -0.258 C6 RAE 9 RAE O1 OXT O 0 1 N Y N -6.671 21.051 33.587 1.880 -1.013 1.092 O1 RAE 10 RAE H1 H1 H 0 1 N N N -6.149 21.245 31.600 2.404 -1.285 -0.888 H1 RAE 11 RAE H21 H2 H 0 1 N N N -7.311 23.292 31.178 0.085 -1.507 -1.700 H21 RAE 12 RAE H22 H2A H 0 1 N N N -8.418 22.199 32.077 0.374 -2.639 -0.356 H22 RAE 13 RAE H3 H3 H 0 1 N N N -7.985 23.383 34.163 -0.688 -1.073 1.223 H3 RAE 14 RAE HO3 HO3 H 0 1 N Y N -8.791 25.481 33.466 -2.123 -2.522 -0.025 HO3 RAE 15 RAE H4 H4 H 0 1 N N N -6.059 25.095 32.517 -1.152 0.670 -1.242 H4 RAE 16 RAE HO4 HO4 H 0 1 N Y N -5.633 26.000 34.611 -2.831 0.805 0.453 HO4 RAE 17 RAE H5 H5 H 0 1 N N N -5.535 23.076 34.730 0.631 1.102 1.199 H5 RAE 18 RAE H61 H6 H 0 1 N N N -3.149 23.560 34.291 -0.395 3.175 0.306 H61 RAE 19 RAE H62 H6A H 0 1 N N N -3.624 24.844 33.128 1.351 3.129 -0.034 H62 RAE 20 RAE H63 H6B H 0 1 N N N -4.023 25.018 34.871 0.184 2.759 -1.325 H63 RAE 21 RAE HO1 HXT H 0 1 N Y N -5.940 20.481 33.795 2.695 -0.576 1.375 HO1 RAE 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RAE C1 C2 SING N N 1 RAE C1 O5 SING N N 2 RAE C1 O1 SING N N 3 RAE C2 C3 SING N N 4 RAE C3 O3 SING N N 5 RAE C3 C4 SING N N 6 RAE C4 O4 SING N N 7 RAE C4 C5 SING N N 8 RAE C5 O5 SING N N 9 RAE C5 C6 SING N N 10 RAE C1 H1 SING N N 11 RAE C2 H21 SING N N 12 RAE C2 H22 SING N N 13 RAE C3 H3 SING N N 14 RAE O3 HO3 SING N N 15 RAE C4 H4 SING N N 16 RAE O4 HO4 SING N N 17 RAE C5 H5 SING N N 18 RAE C6 H61 SING N N 19 RAE C6 H62 SING N N 20 RAE C6 H63 SING N N 21 RAE O1 HO1 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RAE SMILES ACDLabs 12.01 "OC1C(OC(O)CC1O)C" RAE InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4-,5+,6-/m0/s1" RAE InChIKey InChI 1.03 FDWRIIDFYSUTDP-AZGQCCRYSA-N RAE SMILES_CANONICAL CACTVS 3.370 "C[C@@H]1O[C@@H](O)C[C@H](O)[C@H]1O" RAE SMILES CACTVS 3.370 "C[CH]1O[CH](O)C[CH](O)[CH]1O" RAE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@@H]([C@H](C[C@@H](O1)O)O)O" RAE SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RAE "SYSTEMATIC NAME" ACDLabs 12.01 "2,6-dideoxy-alpha-L-arabino-hexopyranose" RAE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S,5R,6S)-6-methyloxane-2,4,5-triol" RAE "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LOlia RAE "COMMON NAME" GMML 1.0 a-L-Olivopyranose RAE "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-2-deoxy-Rhap RAE "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Oli # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RAE "CARBOHYDRATE ISOMER" L PDB ? RAE "CARBOHYDRATE RING" pyranose PDB ? RAE "CARBOHYDRATE ANOMER" alpha PDB ? RAE "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RAE "Create component" 2002-12-11 RCSB RAE "Modify descriptor" 2011-06-04 RCSB RAE "Modify internal type" 2012-02-17 RCSB RAE "Other modification" 2019-08-12 RCSB RAE "Other modification" 2019-12-19 RCSB RAE "Other modification" 2020-07-03 RCSB RAE "Modify name" 2020-07-17 RCSB RAE "Modify synonyms" 2020-07-17 RCSB RAE "Modify atom id" 2020-07-17 RCSB RAE "Modify component atom id" 2020-07-17 RCSB ##