data_RAM # _chem_comp.id RAM _chem_comp.name alpha-L-rhamnopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose; L-rhamnose; rhamnose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RAM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TYU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RAM alpha-L-rhamnose PDB ? 2 RAM 6-deoxy-alpha-L-mannopyranose PDB ? 3 RAM L-rhamnose PDB ? 4 RAM rhamnose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RAM C1 C1 C 0 1 N N R N N N 75.743 60.310 96.718 1.623 -0.117 -0.520 C1 RAM 1 RAM C2 C2 C 0 1 N N R N N N 76.964 59.401 96.820 0.441 0.039 -1.479 C2 RAM 2 RAM C3 C3 C 0 1 N N R N N N 76.653 57.972 96.379 -0.820 -0.518 -0.811 C3 RAM 3 RAM C4 C4 C 0 1 N N R N N N 75.279 57.500 96.935 -0.992 0.158 0.552 C4 RAM 4 RAM C5 C5 C 0 1 N N S N N N 74.781 58.441 97.981 0.298 -0.008 1.358 C5 RAM 5 RAM C6 C6 C 0 1 N N N N N N 73.434 58.022 98.549 0.124 0.634 2.736 C6 RAM 6 RAM O1 O1 O 0 1 N Y N N N N 76.129 61.497 97.319 1.791 -1.499 -0.197 O1 RAM 7 RAM O2 O2 O 0 1 N N N N N N 78.029 59.952 96.047 0.252 1.422 -1.782 O2 RAM 8 RAM O3 O3 O 0 1 N N N N N N 76.721 57.790 94.986 -1.958 -0.245 -1.632 O3 RAM 9 RAM O4 O4 O 0 1 N N N N N N 75.400 56.217 97.537 -2.077 -0.450 1.255 O4 RAM 10 RAM O5 O5 O 0 1 N N N N N N 74.618 59.796 97.449 1.378 0.622 0.673 O5 RAM 11 RAM H1 H1 H 0 1 N N N N N N 75.430 60.412 95.652 2.529 0.254 -0.998 H1 RAM 12 RAM H2 H2 H 0 1 N N N N N N 77.271 59.345 97.890 0.641 -0.511 -2.398 H2 RAM 13 RAM H3 H3 H 0 1 N N N N N N 77.455 57.333 96.816 -0.717 -1.595 -0.676 H3 RAM 14 RAM H4 H4 H 0 1 N N N N N N 74.568 57.464 96.076 -1.199 1.219 0.409 H4 RAM 15 RAM H5 H5 H 0 1 N N N N N N 75.553 58.418 98.784 0.515 -1.069 1.478 H5 RAM 16 RAM H61 H61 H 0 1 N N N N N N 73.062 58.725 99.330 1.042 0.513 3.311 H61 RAM 17 RAM H62 H62 H 0 1 N N N N N N 72.680 57.889 97.737 -0.092 1.695 2.617 H62 RAM 18 RAM H63 H63 H 0 1 N N N N N N 73.469 56.976 98.934 -0.699 0.151 3.261 H63 RAM 19 RAM HO1 HO1 H 0 1 N Y N N N N 75.368 62.063 97.255 2.547 -1.556 0.403 HO1 RAM 20 RAM HO2 HO2 H 0 1 N Y N N N N 78.789 59.386 96.110 1.070 1.733 -2.194 HO2 RAM 21 RAM HO3 HO3 H 0 1 N Y N N N N 76.527 56.901 94.711 -1.800 -0.679 -2.482 HO3 RAM 22 RAM HO4 HO4 H 0 1 N Y N N N N 74.560 55.928 97.876 -2.149 0.005 2.106 HO4 RAM 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RAM C1 C2 SING N N 1 RAM C1 O1 SING N N 2 RAM C1 O5 SING N N 3 RAM C1 H1 SING N N 4 RAM C2 C3 SING N N 5 RAM C2 O2 SING N N 6 RAM C2 H2 SING N N 7 RAM C3 C4 SING N N 8 RAM C3 O3 SING N N 9 RAM C3 H3 SING N N 10 RAM C4 C5 SING N N 11 RAM C4 O4 SING N N 12 RAM C4 H4 SING N N 13 RAM C5 C6 SING N N 14 RAM C5 O5 SING N N 15 RAM C5 H5 SING N N 16 RAM C6 H61 SING N N 17 RAM C6 H62 SING N N 18 RAM C6 H63 SING N N 19 RAM O1 HO1 SING N N 20 RAM O2 HO2 SING N N 21 RAM O3 HO3 SING N N 22 RAM O4 HO4 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RAM SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1O)C" RAM SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O)[C@H]1O" RAM SMILES CACTVS 3.341 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" RAM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)O)O" RAM SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)O)O)O)O" RAM InChI InChI 1.03 "InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6+/m0/s1" RAM InChIKey InChI 1.03 SHZGCJCMOBCMKK-HGVZOGFYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RAM "SYSTEMATIC NAME" ACDLabs 10.04 6-deoxy-alpha-L-mannopyranose RAM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R,6S)-6-methyloxane-2,3,4,5-tetrol" RAM "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRhapa RAM "COMMON NAME" GMML 1.0 a-L-rhamnopyranose RAM "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Rhap RAM "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Rha # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RAM "CARBOHYDRATE ISOMER" L PDB ? RAM "CARBOHYDRATE RING" pyranose PDB ? RAM "CARBOHYDRATE ANOMER" alpha PDB ? RAM "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RAM "Create component" 1999-07-08 EBI RAM "Modify descriptor" 2011-06-04 RCSB RAM "Other modification" 2019-08-12 RCSB RAM "Other modification" 2019-12-19 RCSB RAM "Other modification" 2020-07-03 RCSB RAM "Modify name" 2020-07-17 RCSB RAM "Modify synonyms" 2020-07-17 RCSB RAM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RAM _pdbx_chem_comp_pcm.modified_residue_id 02V _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom O1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom C24 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #